FC931030

Overview
NameFC931030
Unique NameFC931030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EFTU_NITSB (Elongation factor Tu OS=Nitratiruptor sp. (strain SB155-2) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 73/217 (33.64%), Postives = 109/217 (50.23%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWY-KGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYV 657
            MITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           + +  EV   L +  +  D +P +  S  +     +     +W  K   L+EA+D+ I  P+R  DKP  +P++DV+ I G GTV  GR+E GV+K G    IV   P+  TT V  VEM  + L +   GDNVG  ++    ++++RG V
Sbjct:   92 MITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKEDMVD---DPELLELVEMEVRELLNEYDFPGDDVPVIAGSALKALEEAKEGKLGEWSEKILKLMEAVDEYIPTPERDIDKPFLMPIEDVFSISGRGTVVTGRIERGVVKVGDEIEIVGLRPTQKTT-VTGVEMFRKELDQGEAGDNVGVLLRGTKKEEVERGQV 297          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EFTU_NEPOL (Elongation factor Tu, chloroplastic OS=Nephroselmis olivacea GN=tufA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 75/222 (33.78%), Postives = 114/222 (51.35%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNL-----DWY-KGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYV 657
            MITG +Q D A+L++    G          QT+EH LLA  +GV  ++   NK D       +   + +  EV   L    +  D++P VP S       +  + +L     +W  K   L++A+DQ I  PKR TDK   + ++DV+ I G GTV  GRVE G +K G    IV   P+  TT V  +EM  ++L +++ GDNVG  ++ +  +D++RG V
Sbjct:   93 MITGAAQMDGAILVVSGADGPMP-------QTKEHILLAKQVGVPNIVVFLNKQDQVD---DEELLELVELEVRETLSNYEFPGDEVPVVPGSALLALEAMTENPSLKRGENEWVDKIFALMDAVDQYIPTPKRDTDKSFLMAVEDVFSITGRGTVATGRVERGSVKLGDTIEIVGLKPTRETT-VTGLEMFQKTLDQSVAGDNVGILLRGIQKEDIQRGMV 303          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EFTU_DESDG (Elongation factor Tu OS=Desulfovibrio desulfuricans (strain G20) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 77/222 (34.68%), Postives = 110/222 (49.55%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTL--LEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-MIVTFG-PSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSK 672
            MITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    +  D  P +  S  +    +E  +  D    P L  L+A D  I EP+R TDKP  +P++DV+ I G GTV  GRVE G++K G  I   G    +TT    VEM  + L +   GDNVG  ++ V   D++RG V +  K
Sbjct:   92 MITGAAQMDGAIIVVAATDGPMP-------QTREHILLARQVGVPSIVVFLNKCDMVD---DEELLELVELEVRELLSSYDFPGDDTPVIRGSALKA---LECDSADDDAAKPILELLDACDSYIPEPERDTDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEQIEIVGIKDTMTTTCTGVEMFRKLLDQGQAGDNVGVLLRGVKRDDVERGQVLAAPK 300          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EFTU_DESDA (Elongation factor Tu OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 79/226 (34.96%), Postives = 109/226 (48.23%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFV---PISGFEGD--NMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSK 672
            MITG +Q D  +L++ +T G          QTREH LLA  +GV Q++   NK D       +   + +  EV   L    +  D +P +    +   E D  N  E    LD      LL+A D  I EP R  DKP  +P++DV+ I G GTV  GRVE GV+K G    IV   P+  TT    VEM  + L +   GDN+G  ++     D++RG V +  K
Sbjct:   92 MITGAAQMDGGILVVAATDGPMP-------QTREHILLARQVGVPQLVVFLNKCDLVD---DEELLELVELEVRELLSSYDFPGDDVPVIRGSALKALESDDPNSAEAKCILD------LLDACDSFIPEPVRDIDKPFLMPIEDVFSISGRGTVVTGRVERGVIKVGEEVEIVGIKPTVKTT-CTGVEMFRKLLDQGEAGDNIGALLRGTKRDDVERGQVLAAPK 300          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EFTU_ANADE (Elongation factor Tu OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 76/218 (34.86%), Postives = 109/218 (50.00%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVP---ISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLT--TEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYV 657
            MITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       K   D +  EV   L +  +  ++IP V    +   EGD        L       L+EA+D  I  P+R TDKP  +P++DV+ I G GTV  GRVE G++K G  V       T  T V  VEM  + L E   GDN+G  ++ +  ++++RG V
Sbjct:   92 MITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDMVD---DKELLDLVELEVRELLSEYDFPGNEIPIVKGSALKALEGDK-----GELGEQAIFKLMEAVDAYIPTPQRATDKPFLMPVEDVFSISGRGTVATGRVERGIVKVGEEVEVVGLKATAKTVVTGVEMFRKLLDEGRAGDNIGALLRGLKREEVERGQV 294          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: CYSN_VIBC3 (Sulfate adenylyltransferase subunit 1 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=cysN PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 63/192 (32.81%), Postives = 100/192 (52.08%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPG 597
            M TG S  D AV++ID+  G  +       QTR H+ ++  LG+K  I   NKMD     YS+ R+++I  E   + K +     +I  +P+S  EGDN++E+S  +DWY+GP+LLE L+ ++  +  +    R P+Q V +         G + +GV+K G  +   PSG T+ V  +      L +A  G
Sbjct:  123 MATGASTCDLAVILIDARKGVLD-------QTRRHSFISNLLGLKHFIVAVNKMDLVD--YSQDRFEQIRAEYLEFSKHL-QGETEIQIIPLSALEGDNVVEKSRLMDWYQGPSLLELLENVDIDRDKSSGAFRFPVQYVNRPNLDFRGFAGTIASGVVKVGDKIKALPSGKTSTVTRIVTFDGDLPQAQAG 304          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: CYSN_SALTY (Sulfate adenylyltransferase subunit 1 OS=Salmonella typhimurium GN=cysN PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 70/227 (30.84%), Postives = 117/227 (51.54%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRG--YVASNSKDDPAKGAS 696
            M TG S  D A+L+ID+  G  +       QTR H+ ++  LG+K ++   NKMD     Y +  +  I ++  ++ +++  + D I FVP+S  EGDN+  +S N+ WY GPTLLE L+ ++  +    +P+R P+Q V +         G + +G +K G  +   PSG+ + V  +        EA  G+ +   V N  + D+ RG   +A+N    PA+ A+
Sbjct:  124 MATGASTCDLAILLIDARKGVLD-------QTRRHSFISTLLGIKHLVVAINKMDLVD--YREETFARIREDYLTFAEQLPGDLD-IRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITL-VLNDDI-DISRGDLLLAANETLAPARHAA 338          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: CYSN_SALSV (Sulfate adenylyltransferase subunit 1 OS=Salmonella schwarzengrund (strain CVM19633) GN=cysN PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 70/227 (30.84%), Postives = 117/227 (51.54%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRG--YVASNSKDDPAKGAS 696
            M TG S  D A+L+ID+  G  +       QTR H+ ++  LG+K ++   NKMD     Y +  +  I ++  ++ +++  + D I FVP+S  EGDN+  +S N+ WY GPTLLE L+ ++  +    +P+R P+Q V +         G + +G +K G  +   PSG+ + V  +        EA  G+ +   V N  + D+ RG   +A+N    PA+ A+
Sbjct:  124 MATGASTCDLAILLIDARKGVLD-------QTRRHSFISTLLGIKHLVVAINKMDLVD--YREETFARIREDYLTFAEQLPGDLD-IRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITL-VLNDDI-DISRGDLLLAANETLAPARHAA 338          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: CYSN_SALPB (Sulfate adenylyltransferase subunit 1 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=cysN PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 70/227 (30.84%), Postives = 117/227 (51.54%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRG--YVASNSKDDPAKGAS 696
            M TG S  D A+L+ID+  G  +       QTR H+ ++  LG+K ++   NKMD     Y +  +  I ++  ++ +++  + D I FVP+S  EGDN+  +S N+ WY GPTLLE L+ ++  +    +P+R P+Q V +         G + +G +K G  +   PSG+ + V  +        EA  G+ +   V N  + D+ RG   +A+N    PA+ A+
Sbjct:  124 MATGASTCDLAILLIDARKGVLD-------QTRRHSFISTLLGIKHLVVAINKMDLVD--YREETFARIREDYLTFAEQLPGDLD-IRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITL-VLNDDI-DISRGDLLLAANETLAPARHAA 338          
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: CYSN_SALHS (Sulfate adenylyltransferase subunit 1 OS=Salmonella heidelberg (strain SL476) GN=cysN PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 70/227 (30.84%), Postives = 117/227 (51.54%), Query Frame = 1
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRG--YVASNSKDDPAKGAS 696
            M TG S  D A+L+ID+  G  +       QTR H+ ++  LG+K ++   NKMD     Y +  +  I ++  ++ +++  + D I FVP+S  EGDN+  +S N+ WY GPTLLE L+ ++  +    +P+R P+Q V +         G + +G +K G  +   PSG+ + V  +        EA  G+ +   V N  + D+ RG   +A+N    PA+ A+
Sbjct:  124 MATGASTCDLAILLIDARKGVLD-------QTRRHSFISTLLGIKHLVVAINKMDLVD--YREETFARIREDYLTFAEQLPGDLD-IRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITL-VLNDDI-DISRGDLLLAANETLAPARHAA 338          
The following BLAST results are available for this feature:
BLAST of FC931030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_NITSB1.220e-2033.64Elongation factor Tu OS=Nitratiruptor sp. (strain ... [more]
EFTU_NEPOL1.220e-2033.78Elongation factor Tu, chloroplastic OS=Nephroselmi... [more]
EFTU_DESDG1.220e-2034.68Elongation factor Tu OS=Desulfovibrio desulfurican... [more]
EFTU_DESDA1.220e-2034.96Elongation factor Tu OS=Desulfovibrio desulfurican... [more]
EFTU_ANADE1.220e-2034.86Elongation factor Tu OS=Anaeromyxobacter dehalogen... [more]
CYSN_VIBC31.220e-2032.81Sulfate adenylyltransferase subunit 1 OS=Vibrio ch... [more]
CYSN_SALTY1.220e-2030.84Sulfate adenylyltransferase subunit 1 OS=Salmonell... [more]
CYSN_SALSV1.220e-2030.84Sulfate adenylyltransferase subunit 1 OS=Salmonell... [more]
CYSN_SALPB1.220e-2030.84Sulfate adenylyltransferase subunit 1 OS=Salmonell... [more]
CYSN_SALHS1.220e-2030.84Sulfate adenylyltransferase subunit 1 OS=Salmonell... [more]

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Properties
Property NameValue
Genbank descriptionC34100F08EF PostHarvP1 Citrus clementina cDNA clone C34100F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931030 ID=FC931030; Name=FC931030; organism=Citrus clementina; type=EST; length=719bp
ACATCGTGACTTTATTATACCATGATTACTGGTACTTCTCAGGCTGATTG
TGCTGTCCTTATCATCGACTCCACCACTGGTGGTTTTGAAGCTGGTATCT
CTAAGGATGGGCAGACCAGAGAGCACGCTCTACTTGCTTTCACCCTTGGT
GTGAAGCAAATGATTTGTTGCTGTAACAAGATGGATGCCACCACTCCCAA
GTATTCAAAGGCAAGATATGATGAAATTGTTAAGGAAGTCTCTTCCTACT
TGAAGAAGGTTGGCTACAACCCAGATAAGATTCCATTTGTCCCAATCTCT
GGATTTGAGGGTGATAACATGATTGAGAGGTCCACAAACCTTGACTGGTA
CAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCAATGAACCCAAGA
GACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACAAGATT
GGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTACTCAA
GCCCGGTATGATAGTCACATTCGGTCCATCTGGATTGACTACTGAAGTTA
AGTCAGTTGAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTGGTGAT
AATGTGGGGTTCAACGTTAAGAATGTTTCAGTGAAGGATCTTAAGCGTGG
TTACGTTGCATCTAACTCCAAGGATGATCCCGCCAAGGGGGCATCCAACT
TCACCTCCCAGNTATCATC
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