FC931030

Overview
NameFC931030
Unique NameFC931030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14166 contig Ccv1_Contig14166:371..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.843e-93
Identity = 170/242 (70.25%), Postives = 200/242 (82.64%), Query Frame = 1 
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS++R++EI KEVSSY+KK+GYNP  + FVPISG+ GDNM+E ST + W+KG              L+EALD I  P RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG IV F P+ +TTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+L+RGYVA +SK++P KGA++FT+Q
Sbjct:   88 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQ 329
[Close]
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.843e-93
Identity = 170/242 (70.25%), Postives = 200/242 (82.64%), Query Frame = 1 
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS++R++EI KEVSSY+KK+GYNP  + FVPISG+ GDNM+E ST + W+KG              L+EALD I  P RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG IV F P+ +TTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+L+RGYVA +SK++P KGA++FT+Q
Sbjct:   88 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQ 329
[Close]
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_HELGL (Elongation factor 1-alpha (Fragment) OS=Helicoverpa gelotopoeon PE=3 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.843e-93
Identity = 170/242 (70.25%), Postives = 200/242 (82.64%), Query Frame = 1 
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS++R++EI KEVSSY+KK+GYNP  + FVPISG+ GDNM+E ST + W+KG              L+EALD I  P RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG IV F P+ +TTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+L+RGYVA +SK++P KGA++FT+Q
Sbjct:   88 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQ 329
[Close]
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_HELDI (Elongation factor 1-alpha (Fragment) OS=Heliocheilus discalis PE=3 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.843e-93
Identity = 170/242 (70.25%), Postives = 200/242 (82.64%), Query Frame = 1 
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS++R++EI KEVSSY+KK+GYNP  + FVPISG+ GDNM+E ST + W+KG              L+EALD I  P RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG IV F P+ +TTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+L+RGYVA +SK++P KGA++FT+Q
Sbjct:   88 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQ 329
[Close]
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_HELAM (Elongation factor 1-alpha (Fragment) OS=Helicoverpa armigera PE=3 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.843e-93
Identity = 170/242 (70.25%), Postives = 200/242 (82.64%), Query Frame = 1 
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS++R++EI KEVSSY+KK+GYNP  + FVPISG+ GDNM+E ST + W+KG              L+EALD I  P RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG IV F P+ +TTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+L+RGYVA +SK++P KGA++FT+Q
Sbjct:   88 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQ 329
[Close]
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_HELAL (Elongation factor 1-alpha (Fragment) OS=Heliocheilus albipunctella PE=3 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.843e-93
Identity = 170/242 (70.25%), Postives = 200/242 (82.64%), Query Frame = 1 
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS++R++EI KEVSSY+KK+GYNP  + FVPISG+ GDNM+E ST + W+KG              L+EALD I  P RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG IV F P+ +TTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+L+RGYVA +SK++P KGA++FT+Q
Sbjct:   88 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQ 329
[Close]
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_ANIIF (Elongation factor 1-alpha (Fragment) OS=Anicla infecta PE=3 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.843e-93
Identity = 170/242 (70.25%), Postives = 200/242 (82.64%), Query Frame = 1 
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS++R++EI KEVSSY+KK+GYNP  + FVPISG+ GDNM+E ST + W+KG              L+EALD I  P RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG IV F P+ +TTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+L+RGYVA +SK++P KGA++FT+Q
Sbjct:   88 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQ 329
[Close]
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_ADIBE (Elongation factor 1-alpha (Fragment) OS=Adisura bella PE=3 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.843e-93
Identity = 170/242 (70.25%), Postives = 200/242 (82.64%), Query Frame = 1 
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS++R++EI KEVSSY+KK+GYNP  + FVPISG+ GDNM+E ST + W+KG              L+EALD I  P RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG IV F P+ +TTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+L+RGYVA +SK++P KGA++FT+Q
Sbjct:   88 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQ 329
[Close]
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 2.407e-93
Identity = 171/242 (70.66%), Postives = 197/242 (81.40%), Query Frame = 1 
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD T P YS+AR++EI KEVSSY+KK+GYN   + FVPISG+ GDNM+E S    WYKG             TL+EALD I  P RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPGM+VTF P+ LTTEVKSVEMHHE+L EALPGDNVGFNVKN+SVK+L+RGYVA +SK+ P +GA++FT+Q
Sbjct:  102 MITGTSQADCAVLIVAAGIGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNTASVAFVPISGWHGDNMLEPSPKTPWYKGWKVERKDGNADGKTLIEALDAILPPSRPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQ 343
[Close]
BLAST of FC931030 vs. ExPASy Swiss-Prot
Match: EF1A_ARTSA (Elongation factor 1-alpha OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 341.273 bits (874), Expect = 3.144e-93
Identity = 169/242 (69.83%), Postives = 201/242 (83.06%), Query Frame = 1 
Query:   22 MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQ 711
            MITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P +S+AR++EI KEVS+Y+KK+GYNP  + FVPISG+ GDNM+E S  L WYKG             TLL+ALD I  P RPT+KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMIVTF P+ +TTEVKSVEMHHESL +A PGDNVGFNVKNVSVK+L+RGYVAS+SK++PA+G+ +F +Q
Sbjct:  102 MITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPFSEARFEEIKKEVSAYIKKIGYNPAAVAFVPISGWHGDNMLEASDRLPWYKGWNIERKEGKADGKTLLDALDAILPPSRPTEKPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMIVTFAPANITTEVKSVEMHHESLEQASPGDNVGFNVKNVSVKELRRGYVASDSKNNPARGSQDFFAQ 343
The following BLAST results are available for this feature:
BLAST of FC931030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_HELZE1.843e-9370.25Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELVI1.843e-9370.25Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELGL1.843e-9370.25Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELDI1.843e-9370.25Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_HELAM1.843e-9370.25Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELAL1.843e-9370.25Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_ANIIF1.843e-9370.25Elongation factor 1-alpha (Fragment) OS=Anicla inf... [more]
EF1A_ADIBE1.843e-9370.25Elongation factor 1-alpha (Fragment) OS=Adisura be... [more]
EF1A_APIME2.407e-9370.66Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]
EF1A_ARTSA3.144e-9369.83Elongation factor 1-alpha OS=Artemia salina PE=1 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34100F08EF PostHarvP1 Citrus clementina cDNA clone C34100F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931030 ID=FC931030; Name=FC931030; organism=Citrus clementina; type=EST; length=719bp
ACATCGTGACTTTATTATACCATGATTACTGGTACTTCTCAGGCTGATTG
TGCTGTCCTTATCATCGACTCCACCACTGGTGGTTTTGAAGCTGGTATCT
CTAAGGATGGGCAGACCAGAGAGCACGCTCTACTTGCTTTCACCCTTGGT
GTGAAGCAAATGATTTGTTGCTGTAACAAGATGGATGCCACCACTCCCAA
GTATTCAAAGGCAAGATATGATGAAATTGTTAAGGAAGTCTCTTCCTACT
TGAAGAAGGTTGGCTACAACCCAGATAAGATTCCATTTGTCCCAATCTCT
GGATTTGAGGGTGATAACATGATTGAGAGGTCCACAAACCTTGACTGGTA
CAAGGGCCCAACCCTTCTTGAAGCTCTTGACCAGATCAATGAACCCAAGA
GACCAACAGACAAGCCTCTCCGTCTCCCCCTTCAGGATGTCTACAAGATT
GGTGGTATTGGAACTGTCCCTGTTGGCCGTGTTGAAACTGGTGTACTCAA
GCCCGGTATGATAGTCACATTCGGTCCATCTGGATTGACTACTGAAGTTA
AGTCAGTTGAGATGCACCATGAGTCTCTCCTGGAGGCACTTCCTGGTGAT
AATGTGGGGTTCAACGTTAAGAATGTTTCAGTGAAGGATCTTAAGCGTGG
TTACGTTGCATCTAACTCCAAGGATGATCCCGCCAAGGGGGCATCCAACT
TCACCTCCCAGNTATCATC
back to top