FC931032

Overview
NameFC931032
Unique NameFC931032
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931032 vs. ExPASy Swiss-Prot
Match: DFRA_ANTMA (Dihydroflavonol-4-reductase OS=Antirrhinum majus GN=DFRA PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.314e-24
Identity = 77/209 (36.84%), Postives = 108/209 (51.67%), Query Frame = 3
Query:   87 SGQTVCVTGAAGFIASWIVKFLLEKGYSVKGTVRNPDDPKNA-HLRELEGAKERLALCKADLLDYESLKEAFNGCDGVFHTASPV---TDDPE-KMLEPAVIGTKN-XXXXXXXXXXXXXXFTSSIGTVYMDPNRSPDIVVDEHCWSDLEYCKNTK--NW-YCYXXXXXXXXXXXXXXXRGLDLVVVNPMLVIGTLLQPTVNASIIHIL 686
            S  TVCVTGAAGFI SW+V  LLE+GY+V+ TVR+P + K   HL EL  A   L L KAD+    S  EA  GC+GVFH A+ +   + DPE ++++P + G  N               FT+S GTV ++ ++ P  V DE   SD+++  + K   W Y                   +D + + P LV+G  + PT   S+I  L
Sbjct:   16 SSTTVCVTGAAGFIGSWLVMRLLERGYTVRATVRDPGNMKKVKHLIELPKADTNLTLWKADMTVEGSFDEAIQGCEGVFHLATSMEFDSVDPENEVIKPTIDGMLNIIKSCVQAKTVKKFIFTTSGGTVNVEEHQKP--VYDETDSSDMDFINSKKMTGWMYFVSKILAEKAGMEAAKENNIDFISIIPPLVVGPFIMPTFPPSLITAL 222          
BLAST of FC931032 vs. ExPASy Swiss-Prot
Match: DFRA_GERHY (Dihydroflavonol-4-reductase OS=Gerbera hybrida GN=DFR PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.075e-23
Identity = 79/212 (37.26%), Postives = 102/212 (48.11%), Query Frame = 3
Query:   87 SGQTVCVTGAAGFIASWIVKFLLEKGYSVKGTVRNPDDPKNA-HLRELEGAKERLALCKADLLDYESLKEAFNGCDGVFHTASPV---TDDPE-KMLEPAVIGTKN-XXXXXXXXXXXXXXFTSSIGTVYMDPNRSPDIVVDEHCWSDLE--YCKNTKNW-YCYXXXXXXXXXXXXXXXRGLDLVVVNPMLVIGTLLQPTVNASIIHILKYL 695
            S  TVCVTGAAGFI SW+V  LLE+GY V  TVR+P D K   HL EL  A+  L L KADL    S  EA  GC GVFH A+P+   + DPE ++++P + G  +               FTSS GTV  +       V DE  WSDL+  Y K    W Y                   +  + + P LV+G  +  T   S++  L  +
Sbjct:    5 SPATVCVTGAAGFIGSWLVMRLLERGYVVHATVRDPGDLKKVKHLLELPKAQTNLKLWKADLTQEGSFDEAIQGCHGVFHLATPMDFESKDPENEIIKPTIEGVLSIIRSCVKAKTVKKLVFTSSAGTV--NGQEKQLHVYDESHWSDLDFIYSKKMTAWMYFVSKTLAEKAAWDATKGNNISFISIIPTLVVGPFITSTFPPSLVTALSLI 214          
BLAST of FC931032 vs. ExPASy Swiss-Prot
Match: DFRA_MEDSA (Dihydroflavonol-4-reductase (Fragment) OS=Medicago sativa GN=DFR1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.345e-22
Identity = 69/194 (35.57%), Postives = 103/194 (53.09%), Query Frame = 3
Query:  132 SWIVKFLLEKGYSVKGTVRNPDDPKNAH-LRELEGAKERLALCKADLLDYESLKEAFNGCDGVFHTASPV---TDDPE-KMLEPAVIGTKN-XXXXXXXXXXXXXXFTSSIGTVYMDPNRSPDIVVDEHCWSDLEYCKNTK--NW-YCYXXXXXXXXXXXXXXXRGLDLVVVNPMLVIGTLLQPTVNASIIHIL 686
            SW+V  L+E GY V+ TVR+P++ K    L EL GAK +L++ KADL +  S  EA  GC GVFH A+P+   + DPE +M++P + G  +               +TSS GT+ +  ++ P  + DE CWSD+E+C+  K   W Y                   +D++ + P LV+G  L PT+  S+I  L
Sbjct:    2 SWLVMRLMEPGYMVRATVRDPENLKKVSPLLELPGAKSKLSIWKADLGEEGSFDEAIKGCTGVFHVATPMDFESKDPENEMIKPTIKGVLDIMKACLKAKTVRRLIYTSSAGTLNVTEDQKP--LWDESCWSDVEFCRRVKMTGWMYFVSKTLAEQEAWKFAKEHKMDVITIIPPLVVGPFLIPTMPPSLITAL 193          
BLAST of FC931032 vs. ExPASy Swiss-Prot
Match: BAN_ARATH (Leucoanthocyanidin reductase OS=Arabidopsis thaliana GN=BAN PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.783e-20
Identity = 68/205 (33.17%), Postives = 108/205 (52.68%), Query Frame = 3
Query:   66 IDSSMQVSG-QTVCVTGAAGFIASWIVKFLLEKGYSVKGTVRNPDDPKN-AHLRELEGAKERLALCKADLLDYESLKEAFNGCDGVFHTASPV---TDDPEK-MLEPAVIGTKN-XXXXXXXXXXXXXXFTSSIGTVYMDPNRSPDIVVDEHCWSDLEYCKNTK--NW-YCYXXXXXXXXXXXXXXXRGLDLVVVNPMLVIGTLL 650
            +D ++  +G +  CV G  G +AS ++K LL+ GY V  TVR+P++ K  AHLR+L+   + L + KADL D +S + +F+GC+ +FH A+P+   ++DPEK M++PA+ G  N               +TSS   V ++      IV++E  W+D+E+    K  NW Y                   ++LV V P L+ G  L
Sbjct:    1 MDQTLTHTGSKKACVIGGTGNLASILIKHLLQSGYKVNTTVRDPENEKKIAHLRKLQELGD-LKIFKADLTDEDSFESSFSGCEYIFHVATPINFKSEDPEKDMIKPAIQGVINVLKSCLKSKSVKRVIYTSSAAAVSINNLSGTGIVMNEENWTDVEFLTEEKPFNWGYPISKVLAEKTAWEFAKENKINLVTVIPALIAGNSL 204          
The following BLAST results are available for this feature:
BLAST of FC931032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
DFRA_ANTMA9.314e-2436.84Dihydroflavonol-4-reductase OS=Antirrhinum majus G... [more]
DFRA_GERHY2.075e-2337.26Dihydroflavonol-4-reductase OS=Gerbera hybrida GN=... [more]
DFRA_MEDSA1.345e-2235.57Dihydroflavonol-4-reductase (Fragment) OS=Medicago... [more]
BAN_ARATH4.783e-2033.17Leucoanthocyanidin reductase OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34100F10EF PostHarvP1 Citrus clementina cDNA clone C34100F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931032 ID=FC931032; Name=FC931032; organism=Citrus clementina; type=EST; length=733bp
GATTCTCTCAACTTACTCATTTTACTTCCATTCTTCAATTTTTAACAAAA
ATAGCCAGCATGCCGATTGATAGCAGCATGCAAGTTTCCGGCCAAACTGT
TTGTGTCACCGGCGCCGCCGGCTTCATCGCTTCTTGGATCGTTAAATTTC
TCCTGGAAAAGGGTTACAGTGTTAAAGGAACCGTTAGGAATCCAGATGAT
CCAAAGAATGCTCATCTGAGAGAGCTTGAAGGAGCCAAAGAAAGATTAGC
TTTATGCAAAGCTGATCTTCTTGATTATGAGAGTCTTAAAGAGGCATTTA
ATGGATGTGATGGAGTTTTTCATACTGCTTCCCCTGTGACAGATGATCCA
GAAAAAATGTTGGAGCCCGCGGTGATTGGAACGAAGAACGTCATTGTTGC
AGCGGCGGAGGCCAAAGTCCGACGTGTCGTATTCACGTCATCGATCGGTA
CAGTTTACATGGACCCCAACAGGAGCCCTGATATTGTTGTTGACGAACAT
TGCTGGAGTGATCTCGAGTATTGCAAGAACACTAAGAACTGGTACTGCTA
TGCAAAAACTGTGGCAGAGAAGGCCGCGTGGGAAGAGGCGAAAGCCAGAG
GGCTGGACCTGGTGGTGGTGAACCCTATGTTGGTGATAGGGACATTGCTA
CAACCGACTGTGAATGCTAGCATTATTCACATTCTCAAGTATTTAAACTG
GCTCAGTAAGACTTATGCCAATTCAGTTCAAGG
back to top