FC931034

Overview
NameFC931034
Unique NameFC931034
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931034_ssr172 microsatellite FC931034_ssr172:172..183. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12851 contig Ccv1_Contig12851:663..1369. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931034 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20
Identity = 47/153 (30.72%), Postives = 82/153 (53.59%), Query Frame = 1
Query:  247 FRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVL 705
            +RL GR+  VH+ +GGGK AD+ LWR + +S GV+  +T  W+                L++ + + F+ +  S F N+    +PE+ + EE V   A++ R ++N    +  ++  G D + F  V+  LW++S +GS+ +  TL YI  +L
Sbjct:   23 YRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTIL 175          
BLAST of FC931034 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20
Identity = 49/147 (33.33%), Postives = 81/147 (55.10%), Query Frame = 1
Query:  265 EKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVL 705
            E+ VH+ +  G  AD+ +W+N++    +LG  T +W             V +  ++++ +LFLW+ ++   N+  P++P + I EE V  +A A+R  IN    + REI  GR+ K+   V   LW VS VG++ NFLT+ Y+  VL
Sbjct:    2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVL 148          
BLAST of FC931034 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 49/144 (34.03%), Postives = 75/144 (52.08%), Query Frame = 1
Query:  274 VHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVL 705
            VH+ LG G  AD+ LWRN+  +  +L  +T  W             V + L++ +A+ FLW+ ++T +N+  P +P + IPEE   + A  LR  IN    +  +I   R+  + L V   LW +S VG+  N LTL YI  +L
Sbjct:   13 VHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLL 156          
BLAST of FC931034 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 51/152 (33.55%), Postives = 79/152 (51.97%), Query Frame = 1
Query:  262 REKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWS--NASTFINKSPPRIPEVYIPEEPVLQLASALRF---EINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFV 702
            R + ++  LGGG+ AD+  W+NKK S  +LG  T IW             +C  L++ + +  +WS   +S  I   PP I ++ I E       S  RF   +IN     L +I+SG+D +     +  LW++S+VG++ + LTL YIVFV
Sbjct:   18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISE-------SNWRFLFNKINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFV 162          
BLAST of FC931034 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 45/144 (31.25%), Postives = 71/144 (49.31%), Query Frame = 1
Query:  274 VHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSN-ASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFV 702
            V ++LG G  AD+ LW++K  S   L  AT  W             +C  L++ + +LFLW+     F  + PP   E+  P+ P+  L S +   +     +L EIA G+D K FL  I  + ++  +GS+ + LT+ YI  V
Sbjct:    4 VDQILGDGAVADLCLWKDKINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEELNQPDSPLKALFSMMEGHL----LMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLV 143          
The following BLAST results are available for this feature:
BLAST of FC931034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLP_ARATH2.663e-2030.72Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLJ_ARATH4.543e-2033.33Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]
RTNLK_ARATH2.756e-1734.03Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLN_ARATH8.019e-1733.55Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]
RTNLO_ARATH1.198e-1231.25Reticulon-like protein B15 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34100F12EF PostHarvP1 Citrus clementina cDNA clone C34100F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931034 ID=FC931034; Name=FC931034; organism=Citrus clementina; type=EST; length=706bp
ATTACTTCGTTGAGAGTTGGCCAGCTTCTTTCATTTCTCAAAGTTAAAAG
GTTTGAAAACACCGACTGAGGGATTTGTACAGAGAGCGAGATGGCTGACG
AGCATAAACACGAGGAACCAGCCGGTGAATCGGTGAAGGAGAAGATAACG
GAGAAGATCCACGGCCACGATTCGTCGTCGTCGTCATCGTCATCTGACTC
CGATGATGATAAGAAGTCATCTGCATCCTCCCTCAAGACCAAAGTATTTC
GTCTCTTCGGAAGAGAAAAGCCTGTTCACAAGGTTCTTGGTGGCGGAAAA
CCTGCGGATGTTTTCTTATGGAGGAACAAGAAGATTTCAGCAGGAGTACT
TGGTGGGGCTACTGCAATATGGGTTCTTTTTGAATTGCTTGAGTACCACC
TTCTAACTCTTGTCTGTCACTGCCTGATTGTTGCACTTGCGGTGCTTTTC
TTGTGGTCTAATGCTTCCACCTTCATTAACAAGTCTCCACCACGCATTCC
AGAAGTATATATCCCTGAGGAACCAGTTTTACAGTTGGCCTCTGCACTTA
GGTTTGAGATCAATAGGGCCTTCCCTCTTCTGAGGGAAATAGCATCTGGA
AGAGATCTGAAGAAGTTTCTCTCGGTGATTGCTGGCTTGTGGGTTGTGTC
GATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTACATAGTTTTTG
TACTGC
back to top