FC931035
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18 Identity = 47/96 (48.96%), Postives = 68/96 (70.83%), Query Frame = 1 Query: 49 VPISSFL----LMASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324 VP++S L LM++ + F+GGL+W T D+SL +AF+ +GD++++K+I DRETGRS GFGFV F DE + AI M+G+ L+GR+I VN A Sbjct: 21 VPVTSMLGSLRLMST-----KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.728e-16 Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 1 Query: 79 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327 S D R +VG L+W D +L E FS G+++++K++ DR++GRS GFGFVT+ K + DAI+ +NG +LDGR+I V+ A+ Sbjct: 202 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAE 284
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.947e-16 Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 1 Query: 79 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327 S D R +VG L+W D +L E FS G+++++K++ DR++GRS GFGFVT+ K + DAI+ +NG +LDGR+I V+ A+ Sbjct: 203 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAE 285
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 94 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327 +R +VG + W D+ L + FS +G ++ ++++ DRETGRS GFGFVT E M DAI ++GQ+LDGR I VN A+ Sbjct: 230 YRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 94 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327 FR +VG L W + L + FS +G ++E++++ DRETGRS GFGFVT D + +AI ++GQNL+GR I VN A+ Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15 Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = 1 Query: 91 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324 E + FVGGL + TT+ SL + FS YG + E ++ DRE+ RS GFGFVTF + + +DA+ MNG+++DGR I V++A Sbjct: 5 EGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15 Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1 Query: 82 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324 A E + FVGGL++ T + SL + FS YG I E ++ DRET RS GFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15 Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1 Query: 82 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324 A E + FVGGL++ T + SL + FS YG I E ++ DRET RS GFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15 Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 1 Query: 97 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327 R +VG L W S L + FS +G ++ +++++DRETGRS GFGFVT E + DAI ++GQ LDGR + VN A+ Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15 Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 1 Query: 94 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327 +R +VG + W D+ L + FS +G ++ ++++ DRE+GRS GFGFVT E M +AI ++GQ LDGR I VN A+ Sbjct: 191 YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268 The following BLAST results are available for this feature:
BLAST of FC931035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 48
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931035 ID=FC931035; Name=FC931035; organism=Citrus clementina; type=EST; length=695bpback to top |