FC931035

Overview
NameFC931035
Unique NameFC931035
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 47/96 (48.96%), Postives = 68/96 (70.83%), Query Frame = 1
Query:   49 VPISSFL----LMASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            VP++S L    LM++     + F+GGL+W T D+SL +AF+ +GD++++K+I DRETGRS GFGFV F DE +   AI  M+G+ L+GR+I VN A
Sbjct:   21 VPVTSMLGSLRLMST-----KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.728e-16
Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   79 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327
            S D   R +VG L+W   D +L E FS  G+++++K++ DR++GRS GFGFVT+   K + DAI+ +NG +LDGR+I V+ A+
Sbjct:  202 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAE 284          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.947e-16
Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   79 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327
            S D   R +VG L+W   D +L E FS  G+++++K++ DR++GRS GFGFVT+   K + DAI+ +NG +LDGR+I V+ A+
Sbjct:  203 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAE 285          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   94 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327
            +R +VG + W   D+ L + FS +G ++ ++++ DRETGRS GFGFVT   E  M DAI  ++GQ+LDGR I VN A+
Sbjct:  230 YRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   94 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327
            FR +VG L W   +  L + FS +G ++E++++ DRETGRS GFGFVT  D   + +AI  ++GQNL+GR I VN A+
Sbjct:  244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.910e-15
Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   91 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            E + FVGGL + TT+ SL + FS YG + E  ++ DRE+ RS GFGFVTF + +  +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   82 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            A  E + FVGGL++ T + SL + FS YG I E  ++ DRET RS GFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   82 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            A  E + FVGGL++ T + SL + FS YG I E  ++ DRET RS GFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   97 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327
            R +VG L W    S L + FS +G ++ +++++DRETGRS GFGFVT   E  + DAI  ++GQ LDGR + VN A+
Sbjct:  150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   94 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327
            +R +VG + W   D+ L + FS +G ++ ++++ DRE+GRS GFGFVT   E  M +AI  ++GQ LDGR I VN A+
Sbjct:  191 YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268          
The following BLAST results are available for this feature:
BLAST of FC931035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
GRP2_ARATH2.411e-1848.96Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
ROC2_NICSY1.728e-1645.7829 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC2_NICPL2.947e-1645.7831 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC4_NICSY5.027e-1647.4431 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_ARATH1.463e-1547.4431 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
CIRBP_XENTR1.910e-1548.72Cold-inducible RNA-binding protein OS=Xenopus trop... [more]
CIRBP_PONAB3.259e-1549.38Cold-inducible RNA-binding protein OS=Pongo abelii... [more]
CIRBP_HUMAN3.259e-1549.38Cold-inducible RNA-binding protein OS=Homo sapiens... [more]
ROC1_SPIOL5.558e-1546.7528 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC3_NICSY7.259e-1544.8728 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

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Properties
Property NameValue
Genbank descriptionC34100G01EF PostHarvP1 Citrus clementina cDNA clone C34100G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931035 ID=FC931035; Name=FC931035; organism=Citrus clementina; type=EST; length=695bp
ATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCTTAGT
CCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTTCGGT
GCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCATGAG
GCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTATTAACGATCG
CGAGACTGGAAGATCCGGAGGATTTGGATTCGTTACCTTCCGCGATGAGA
AGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAATCTGGACGGC
CGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGGCGGTGG
CGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTGGTGGAC
GCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGATACGGA
GGTGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTTACAGCCGTGA
CGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGTGCTT
CTGATGGCGGTAGCTGGAGGAACTAGGGTTTTGTAGGATAAATTAGGAGT
TGAATGTTACCGTTCCGTGTTTTGATATTTTCCTTGGGTTATGATGTGTC
GTTTTGATCGGTTCCTGTTATCCTGTGTTGTTTCGTTCTCCCCTG
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