FC931035

Overview
NameFC931035
Unique NameFC931035
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   82 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            A  E + FVGGL++ T + +L + FS YG I E  ++ DRET RS GFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   91 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            E + FVGGL++ T +  L   FS YG I E  ++ DRET RS GFGFVTF + +  +DA+ GMNG+ +DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   82 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            A  E + FVGGL++ T + +L + FS YG I E  ++ DRET RS GFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   82 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            A  E + FVGGL++ T + +L + FS YG I E  ++ DRET RS GFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.617e-14
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   91 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            E + F+GGL + T + SL + FS YG I E  ++ DRET RS GFGFVTF +    +DA+  MNG+ +DGR I V++A
Sbjct:    4 EGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 34/77 (44.16%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   97 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327
            R +VG L+W   D +L   FS  G ++E+++I DR++GRS GFGFVT+   + +++AI+ ++G +LDGR I V+EA+
Sbjct:  205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAE 281          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   91 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            E + F+GGL + T +  L +AF+ YG I E  ++ DRET RS GFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    4 EGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 34/77 (44.16%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   97 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327
            R +VG L+W   D +L   F+  G ++E+++I DR++GRS GFGFVT    + ++ AI  +NG +LDGR I V+EA+
Sbjct:  258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAE 334          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.145e-14
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   91 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            E + FVGGL + T + +L + FS++G I E  ++ DRET RS GFGF+TF + +   DA+  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.048e-13
Identity = 39/93 (41.94%), Postives = 62/93 (66.67%), Query Frame = 1
Query:   49 VPISSFLLMASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327
            VP+SS +L +   +  + ++GGL+  T + SL +AFS++  + E++++ ++ TGRS G+GFV F  E S   AI  MNGQ L+G NI+VN A+
Sbjct:   17 VPVSS-MLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAK 108          
The following BLAST results are available for this feature:
BLAST of FC931035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CIRBP_RAT7.259e-1548.15Cold-inducible RNA-binding protein OS=Rattus norve... [more]
CIRBP_RANCA7.259e-1550.00Cold-inducible RNA-binding protein OS=Rana catesbe... [more]
CIRBP_MOUSE7.259e-1548.15Cold-inducible RNA-binding protein OS=Mus musculus... [more]
CIRBP_CRIGR7.259e-1548.15Cold-inducible RNA-binding protein OS=Cricetulus g... [more]
CIRBB_XENLA1.617e-1448.72Cold-inducible RNA-binding protein B OS=Xenopus la... [more]
ROC1_ARATH2.112e-1444.16Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
CIRBA_XENLA3.603e-1447.44Cold-inducible RNA-binding protein A OS=Xenopus la... [more]
ROC2_ARATH4.705e-1444.1629 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
RBM3_MOUSE6.145e-1447.44Putative RNA-binding protein 3 OS=Mus musculus GN=... [more]
RT19_ARATH1.048e-1341.9440S ribosomal protein S19, mitochondrial OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionC34100G01EF PostHarvP1 Citrus clementina cDNA clone C34100G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931035 ID=FC931035; Name=FC931035; organism=Citrus clementina; type=EST; length=695bp
ATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCTTAGT
CCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTTCGGT
GCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCATGAG
GCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTATTAACGATCG
CGAGACTGGAAGATCCGGAGGATTTGGATTCGTTACCTTCCGCGATGAGA
AGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAATCTGGACGGC
CGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGGCGGTGG
CGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTGGTGGAC
GCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGATACGGA
GGTGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTTACAGCCGTGA
CGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGTGCTT
CTGATGGCGGTAGCTGGAGGAACTAGGGTTTTGTAGGATAAATTAGGAGT
TGAATGTTACCGTTCCGTGTTTTGATATTTTCCTTGGGTTATGATGTGTC
GTTTTGATCGGTTCCTGTTATCCTGTGTTGTTTCGTTCTCCCCTG
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