FC931035
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15 Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 1 Query: 82 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324 A E + FVGGL++ T + +L + FS YG I E ++ DRET RS GFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15 Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 91 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324 E + FVGGL++ T + L FS YG I E ++ DRET RS GFGFVTF + + +DA+ GMNG+ +DGR I V++A Sbjct: 5 EGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15 Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 1 Query: 82 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324 A E + FVGGL++ T + +L + FS YG I E ++ DRET RS GFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.259e-15 Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 1 Query: 82 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324 A E + FVGGL++ T + +L + FS YG I E ++ DRET RS GFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.617e-14 Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 1 Query: 91 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324 E + F+GGL + T + SL + FS YG I E ++ DRET RS GFGFVTF + +DA+ MNG+ +DGR I V++A Sbjct: 4 EGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14 Identity = 34/77 (44.16%), Postives = 55/77 (71.43%), Query Frame = 1 Query: 97 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327 R +VG L+W D +L FS G ++E+++I DR++GRS GFGFVT+ + +++AI+ ++G +LDGR I V+EA+ Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAE 281
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 91 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324 E + F+GGL + T + L +AF+ YG I E ++ DRET RS GFGFVTF + +DA+ MNG+++DGR I V++A Sbjct: 4 EGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14 Identity = 34/77 (44.16%), Postives = 52/77 (67.53%), Query Frame = 1 Query: 97 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327 R +VG L+W D +L F+ G ++E+++I DR++GRS GFGFVT + ++ AI +NG +LDGR I V+EA+ Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAE 334
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.145e-14 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 91 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324 E + FVGGL + T + +L + FS++G I E ++ DRET RS GFGF+TF + + DA+ MNG++LDGR I V+ A Sbjct: 5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.048e-13 Identity = 39/93 (41.94%), Postives = 62/93 (66.67%), Query Frame = 1 Query: 49 VPISSFLLMASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327 VP+SS +L + + + ++GGL+ T + SL +AFS++ + E++++ ++ TGRS G+GFV F E S AI MNGQ L+G NI+VN A+ Sbjct: 17 VPVSS-MLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAK 108 The following BLAST results are available for this feature:
BLAST of FC931035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 48
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931035 ID=FC931035; Name=FC931035; organism=Citrus clementina; type=EST; length=695bpback to top |