FC931035
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13 Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1 Query: 91 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324 E + FVGGL + T + +L + FS++G I E ++ DRET RS GFGF+TF + + D + MNG++LDGR I V+ A Sbjct: 5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHA 82
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13 Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 1 Query: 79 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327 S D R +VG LAW +L FS G ++++K++ DR++GRS GFGFVT+ + + +AIE ++G +L+GR I V+ A+ Sbjct: 183 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13 Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 1 Query: 79 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327 S D R +VG LAW +L FS G ++++K++ DR++GRS GFGFVT+ + + +AIE ++G +L+GR I V+ A+ Sbjct: 189 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13 Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1 Query: 91 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324 E + FVGGL + T + +L + FS++G I E ++ DRET RS GFGF+TF + + A+ MNG++LDGR I V+ A Sbjct: 5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA 82
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: HNRPG_PANTR (Heterogeneous nuclear ribonucleoprotein G OS=Pan troglodytes GN=RBMX PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12 Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1 Query: 73 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324 M AD + F+GGL T + +L F YG I+E ++ DRET +S GF FVTF +DA MNG++LDG+ I V +A Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: HNRPG_HUMAN (Heterogeneous nuclear ribonucleoprotein G OS=Homo sapiens GN=RBMX PE=1 SV=3) HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12 Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1 Query: 73 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324 M AD + F+GGL T + +L F YG I+E ++ DRET +S GF FVTF +DA MNG++LDG+ I V +A Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: HNRPG_RAT (Heterogeneous nuclear ribonucleoprotein G OS=Rattus norvegicus GN=Rbmx PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12 Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1 Query: 73 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324 M AD + F+GGL T + +L F YG I+E ++ DRET +S GF FVTF +D MNG++LDG+ I V +A Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQA 84
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: HNRPG_MOUSE (Heterogeneous nuclear ribonucleoprotein G OS=Mus musculus GN=Rbmx PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12 Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1 Query: 73 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324 M AD + F+GGL T + +L F YG I+E ++ DRET +S GF FVT +DA MNG++LDG+ I V +A Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVEQA 84
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: HNRPG_BOVIN (Heterogeneous nuclear ribonucleoprotein G OS=Bos taurus GN=RBMX PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11 Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1 Query: 73 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324 M AD + F+GGL T + SL F YG I E ++ DRET +S GF F+TF + A+ MNG++LDG+ I V +A Sbjct: 1 MVEADRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQA 84
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: HNRGT_MACFA (RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis GN=RBMXL2 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11 Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 1 Query: 73 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324 M AD + F+GGL T + +L F YG I+E ++ DRET +S GF FVTF + + A MNG++LDG+ I V +A Sbjct: 1 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPANAKAAARDMNGKSLDGKAIKVAQA 84 The following BLAST results are available for this feature:
BLAST of FC931035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 48
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931035 ID=FC931035; Name=FC931035; organism=Citrus clementina; type=EST; length=695bpback to top |