FC931035

Overview
NameFC931035
Unique NameFC931035
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   91 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            E + FVGGL + T + +L + FS++G I E  ++ DRET RS GFGF+TF + +   D +  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHA 82          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   79 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327
            S D   R +VG LAW     +L   FS  G ++++K++ DR++GRS GFGFVT+   + + +AIE ++G +L+GR I V+ A+
Sbjct:  183 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   79 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327
            S D   R +VG LAW     +L   FS  G ++++K++ DR++GRS GFGFVT+   + + +AIE ++G +L+GR I V+ A+
Sbjct:  189 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   91 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            E + FVGGL + T + +L + FS++G I E  ++ DRET RS GFGF+TF + +    A+  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA 82          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: HNRPG_PANTR (Heterogeneous nuclear ribonucleoprotein G OS=Pan troglodytes GN=RBMX PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   73 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            M  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +S GF FVTF      +DA   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: HNRPG_HUMAN (Heterogeneous nuclear ribonucleoprotein G OS=Homo sapiens GN=RBMX PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   73 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            M  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +S GF FVTF      +DA   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: HNRPG_RAT (Heterogeneous nuclear ribonucleoprotein G OS=Rattus norvegicus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   73 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            M  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +S GF FVTF      +D    MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQA 84          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: HNRPG_MOUSE (Heterogeneous nuclear ribonucleoprotein G OS=Mus musculus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   73 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            M  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +S GF FVT       +DA   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: HNRPG_BOVIN (Heterogeneous nuclear ribonucleoprotein G OS=Bos taurus GN=RBMX PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   73 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            M  AD   + F+GGL   T + SL   F  YG I E  ++ DRET +S GF F+TF      + A+  MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQA 84          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: HNRGT_MACFA (RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis GN=RBMXL2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   73 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            M  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +S GF FVTF    + + A   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPANAKAAARDMNGKSLDGKAIKVAQA 84          
The following BLAST results are available for this feature:
BLAST of FC931035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RBM3_RAT1.788e-1346.15Putative RNA-binding protein 3 OS=Rattus norvegicu... [more]
ROC1_NICSY5.202e-1340.9629 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL5.202e-1340.9630 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RBM3_HUMAN6.794e-1346.15Putative RNA-binding protein 3 OS=Homo sapiens GN=... [more]
HNRPG_PANTR1.514e-1242.86Heterogeneous nuclear ribonucleoprotein G OS=Pan t... [more]
HNRPG_HUMAN1.514e-1242.86Heterogeneous nuclear ribonucleoprotein G OS=Homo ... [more]
HNRPG_RAT4.404e-1241.67Heterogeneous nuclear ribonucleoprotein G OS=Rattu... [more]
HNRPG_MOUSE9.811e-1241.67Heterogeneous nuclear ribonucleoprotein G OS=Mus m... [more]
HNRPG_BOVIN1.281e-1141.67Heterogeneous nuclear ribonucleoprotein G OS=Bos t... [more]
HNRGT_MACFA2.855e-1141.67RNA-binding motif protein, X-linked-like-2 OS=Maca... [more]

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Properties
Property NameValue
Genbank descriptionC34100G01EF PostHarvP1 Citrus clementina cDNA clone C34100G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931035 ID=FC931035; Name=FC931035; organism=Citrus clementina; type=EST; length=695bp
ATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCTTAGT
CCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTTCGGT
GCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCATGAG
GCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTATTAACGATCG
CGAGACTGGAAGATCCGGAGGATTTGGATTCGTTACCTTCCGCGATGAGA
AGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAATCTGGACGGC
CGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGGCGGTGG
CGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTGGTGGAC
GCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGATACGGA
GGTGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTTACAGCCGTGA
CGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGTGCTT
CTGATGGCGGTAGCTGGAGGAACTAGGGTTTTGTAGGATAAATTAGGAGT
TGAATGTTACCGTTCCGTGTTTTGATATTTTCCTTGGGTTATGATGTGTC
GTTTTGATCGGTTCCTGTTATCCTGTGTTGTTTCGTTCTCCCCTG
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