FC931035

Overview
NameFC931035
Unique NameFC931035
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   97 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+S G+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   97 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+S G+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   97 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+S G+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-B PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   97 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+S G+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   97 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+S G+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: HNRGT_HUMAN (RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens GN=RBMXL2 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   73 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            M  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +S GF FVTF      + A   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIKVAQA 84          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 1
Query:   85 DVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            D   + +V  L+WA T   L +AF+     + +K+I DR +GRS GFGF+TF   ++M  A++ MN   L+GR + +N A
Sbjct:  214 DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 1
Query:   97 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 324
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+S G+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 109          
The following BLAST results are available for this feature:
BLAST of FC931035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RBM38_CHICK3.728e-1147.37RNA-binding protein 38 OS=Gallus gallus GN=RBM38 P... [more]
RBM24_XENTR3.728e-1147.37RNA-binding protein 24 OS=Xenopus tropicalis GN=rb... [more]
RBM24_CHICK3.728e-1147.37RNA-binding protein 24 OS=Gallus gallus GN=RBM24 P... [more]
RB24B_XENLA3.728e-1147.37RNA-binding protein 24-B OS=Xenopus laevis GN=rbm2... [more]
RB24A_XENLA3.728e-1147.37RNA-binding protein 24-A OS=Xenopus laevis GN=rbm2... [more]
HNRGT_HUMAN3.728e-1141.67RNA-binding motif protein, X-linked-like-2 OS=Homo... [more]
ROC5_NICSY6.359e-1138.7533 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RBM38_HUMAN8.306e-1146.05RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE... [more]

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Properties
Property NameValue
Genbank descriptionC34100G01EF PostHarvP1 Citrus clementina cDNA clone C34100G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931035 ID=FC931035; Name=FC931035; organism=Citrus clementina; type=EST; length=695bp
ATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCTTAGT
CCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTTCGGT
GCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCATGAG
GCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTATTAACGATCG
CGAGACTGGAAGATCCGGAGGATTTGGATTCGTTACCTTCCGCGATGAGA
AGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAATCTGGACGGC
CGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGGCGGTGG
CGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTGGTGGAC
GCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGATACGGA
GGTGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTTACAGCCGTGA
CGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGTGCTT
CTGATGGCGGTAGCTGGAGGAACTAGGGTTTTGTAGGATAAATTAGGAGT
TGAATGTTACCGTTCCGTGTTTTGATATTTTCCTTGGGTTATGATGTGTC
GTTTTGATCGGTTCCTGTTATCCTGTGTTGTTTCGTTCTCCCCTG
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