FC931043 | Citrus Genome Database

Overview


Name	FC931043
Unique Name	FC931043
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	684

Libraries


Library Name	Type
PostHarvP1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC931043_ssr34	microsatellite	FC931043_ssr34:34..43.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10339	contig	Ccv1_Contig10339:2..686.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC931043 vs. ExPASy Swiss-Prot
Match: ENO1_DEBHA (Enolase 1 OS=Debaryomyces hansenii GN=ENO1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.186e-51
Identity = 85/148 (57.43%), Postives = 110/148 (74.32%), Query Frame = 1

Query:   88 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPAL--AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNR 522
            +TI+ V +R ++DSRGNPTVEVDVTT +G + RA VPSGASTGI EA+ELRDG  S + GKGV+KAV NVN  I P L  +G D   Q  ID+++++ LDGT N     K+ LGANAIL VSLA+ KAGA  K++PLY+HIA++S ++
Sbjct:    1 MTISKVHSRYVYDSRGNPTVEVDVTTENG-LFRAIVPSGASTGINEAMELRDGDKSKWQGKGVTKAVDNVNKTIAPHLIKSGLDEKNQEEIDSFLLK-LDGTPN-----KRSLGANAILGVSLAVAKAGAAAKQVPLYRHIADISKSK 141

HSP 2 Score: 74.3294 bits (181), Expect = 9.186e-51
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 3

Query:  528 VLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAV 683
            VLPVP  NV+NGGSHAG  LA QEFMI P  A  F EA+++G EVYHHLK++
Sbjct:  146 VLPVPFQNVLNGGSHAGGSLAFQEFMIAPTNAPSFSEALRIGSEVYHHLKSL 197

[Close]

BLAST of FC931043 vs. ExPASy Swiss-Prot
Match: ENO_ANATD (Enolase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=eno PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 9.187e-51
Identity = 84/142 (59.15%), Postives = 103/142 (72.54%), Query Frame = 1

Query:   79 KMAITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHI 501
            K+ ++ITAVKAR+I DSRGNPTVEV+V  +D  V RAAVPSGASTGI+EA+ELRDG    Y+GKGV KAV NVN +I P + G +   Q  ID  M+ +LDGT N     K KLGANAIL VSLA+ KA A+   +PLY++I
Sbjct:    2 KVDLSITAVKAREILDSRGNPTVEVEVVVNDEFVGRAAVPSGASTGIFEAVELRDGDKKRYMGKGVLKAVENVNEVIAPEIIGMNALNQVEIDKLMI-ELDGTEN-----KSKLGANAILGVSLAVAKAAANALGLPLYQYI 137

HSP 2 Score: 69.3218 bits (168), Expect = 9.187e-51
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 3

Query:  531 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAV 683
            LPVP  N++NGG HA N + +QEFMI+PVGA  F EA++M  E +HHL+ V
Sbjct:  145 LPVPMMNILNGGKHADNSVDLQEFMIMPVGAKSFSEALRMCAETFHHLRNV 195

[Close]

BLAST of FC931043 vs. ExPASy Swiss-Prot
Match: ENO_PSEAE (Enolase OS=Pseudomonas aeruginosa GN=eno PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.198e-50
Identity = 84/142 (59.15%), Postives = 98/142 (69.01%), Query Frame = 1

Query:   94 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSG 516
            I  +K R++ DSRGNPTVE DV   +G V  A  PSGASTG  EALELRDG  S YLGKGV KAV+N+N  I   L GKD  +Q A+D+ M+ +LDGT N     K KLGANAILAVSLA  KA A  K +PLY HIA+L+G
Sbjct:    4 IVDIKGREVLDSRGNPTVEADVILDNGIVGSACAPSGASTGSREALELRDGDKSRYLGKGVLKAVANINGPIRDLLLGKDAADQKALDHAMI-ELDGTEN-----KAKLGANAILAVSLAAAKAAAQAKGVPLYAHIADLNG 139

HSP 2 Score: 73.9442 bits (180), Expect = 1.198e-50
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 3

Query:  531 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAV 683
            +PVP  N+INGG HA N + +QEFM+ PVGA  F EA++MG E++HHLKAV
Sbjct:  146 MPVPMMNIINGGEHADNNVDIQEFMVQPVGAKNFAEALRMGAEIFHHLKAV 196

[Close]

BLAST of FC931043 vs. ExPASy Swiss-Prot
Match: ENO_PSEAB (Enolase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=eno PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.198e-50
Identity = 84/142 (59.15%), Postives = 98/142 (69.01%), Query Frame = 1

Query:   94 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSG 516
            I  +K R++ DSRGNPTVE DV   +G V  A  PSGASTG  EALELRDG  S YLGKGV KAV+N+N  I   L GKD  +Q A+D+ M+ +LDGT N     K KLGANAILAVSLA  KA A  K +PLY HIA+L+G
Sbjct:    4 IVDIKGREVLDSRGNPTVEADVILDNGIVGSACAPSGASTGSREALELRDGDKSRYLGKGVLKAVANINGPIRDLLLGKDAADQKALDHAMI-ELDGTEN-----KAKLGANAILAVSLAAAKAAAQAKGVPLYAHIADLNG 139

HSP 2 Score: 73.9442 bits (180), Expect = 1.198e-50
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 3

Query:  531 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAV 683
            +PVP  N+INGG HA N + +QEFM+ PVGA  F EA++MG E++HHLKAV
Sbjct:  146 MPVPMMNIINGGEHADNNVDIQEFMVQPVGAKNFAEALRMGAEIFHHLKAV 196

[Close]

BLAST of FC931043 vs. ExPASy Swiss-Prot
Match: ENO_PSEA8 (Enolase OS=Pseudomonas aeruginosa (strain LESB58) GN=eno PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.198e-50
Identity = 84/142 (59.15%), Postives = 98/142 (69.01%), Query Frame = 1

Query:   94 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSG 516
            I  +K R++ DSRGNPTVE DV   +G V  A  PSGASTG  EALELRDG  S YLGKGV KAV+N+N  I   L GKD  +Q A+D+ M+ +LDGT N     K KLGANAILAVSLA  KA A  K +PLY HIA+L+G
Sbjct:    4 IVDIKGREVLDSRGNPTVEADVILDNGIVGSACAPSGASTGSREALELRDGDKSRYLGKGVLKAVANINGPIRDLLLGKDAADQKALDHAMI-ELDGTEN-----KAKLGANAILAVSLAAAKAAAQAKGVPLYAHIADLNG 139

HSP 2 Score: 73.9442 bits (180), Expect = 1.198e-50
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 3

Query:  531 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAV 683
            +PVP  N+INGG HA N + +QEFM+ PVGA  F EA++MG E++HHLKAV
Sbjct:  146 MPVPMMNIINGGEHADNNVDIQEFMVQPVGAKNFAEALRMGAEIFHHLKAV 196

[Close]

BLAST of FC931043 vs. ExPASy Swiss-Prot
Match: ENO_PSEA7 (Enolase OS=Pseudomonas aeruginosa (strain PA7) GN=eno PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.198e-50
Identity = 84/142 (59.15%), Postives = 98/142 (69.01%), Query Frame = 1

Query:   94 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSG 516
            I  +K R++ DSRGNPTVE DV   +G V  A  PSGASTG  EALELRDG  S YLGKGV KAV+N+N  I   L GKD  +Q A+D+ M+ +LDGT N     K KLGANAILAVSLA  KA A  K +PLY HIA+L+G
Sbjct:    4 IVDIKGREVLDSRGNPTVEADVILDNGIVGSACAPSGASTGSREALELRDGDKSRYLGKGVLKAVANINGPIRDLLLGKDAADQKALDHAMI-ELDGTEN-----KAKLGANAILAVSLAAAKAAAQAKGVPLYAHIADLNG 139

HSP 2 Score: 73.9442 bits (180), Expect = 1.198e-50
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 3

Query:  531 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAV 683
            +PVP  N+INGG HA N + +QEFM+ PVGA  F EA++MG E++HHLKAV
Sbjct:  146 MPVPMMNIINGGEHADNNVDIQEFMVQPVGAKNFAEALRMGAEIFHHLKAV 196

[Close]

BLAST of FC931043 vs. ExPASy Swiss-Prot
Match: ENO_PSEMY (Enolase OS=Pseudomonas mendocina (strain ymp) GN=eno PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.561e-50
Identity = 85/142 (59.86%), Postives = 97/142 (68.31%), Query Frame = 1

Query:   94 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSG 516
            I  +K R++ DSRGNPTVE DV    G V  A  PSGASTG  EALELRDG  S YLGKGV KAV+N+N  I   L GKD T+Q A+D  M+ +LDGT N     K KLGANAILAVSLA  KA A  K +PLY HIA+L+G
Sbjct:    4 IVDIKGREVLDSRGNPTVEADVILEGGIVGSACAPSGASTGSREALELRDGDKSRYLGKGVLKAVANINGPIRDLLLGKDATDQQALDRAMI-ELDGTEN-----KAKLGANAILAVSLAAAKAAAQAKGVPLYAHIADLNG 139

HSP 2 Score: 72.7886 bits (177), Expect = 1.561e-50
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 3

Query:  531 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAV 683
            +PVP  N+INGG HA N + +QEFM+ PVGA  F +A++MG E++HHLKAV
Sbjct:  146 MPVPMMNIINGGEHADNNVDIQEFMVQPVGAKNFADALRMGAEIFHHLKAV 196

[Close]

BLAST of FC931043 vs. ExPASy Swiss-Prot
Match: ENO_TUBBO (Enolase OS=Tuber borchii GN=eno-1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.456e-50
Identity = 84/146 (57.53%), Postives = 105/146 (71.92%), Query Frame = 1

Query:   94 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRD-GGSDYLGKGVSKAVSNVNAIIGPALAGK--DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNR 522
            IT + AR ++DSRGNPTVEVD+TT+D  + RA VPSGASTG +EA+ELRD   + + GKGV KAV NVN II PAL  +  D  +Q  ID +++  LDGT N     K KLGANAIL VSLA+ KAGA  KK+PLY H+A+L+G +
Sbjct:    2 ITKIHARSVYDSRGNPTVEVDLTTTDTGLHRAIVPSGASTGQHEAIELRDKDKTKWAGKGVLKAVENVNTIIAPALIKEKFDVKDQATIDKFLI-DLDGTPN-----KAKLGANAILGVSLAVAKAGAAAKKVPLYAHVADLAGTK 141

HSP 2 Score: 69.707 bits (169), Expect = 3.456e-50
Identity = 34/52 (65.38%), Postives = 38/52 (73.08%), Query Frame = 3

Query:  528 VLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAV 683
            VLPVP  NVINGGSHAG +LA QEFMI+P  A  F EAM+ G EVY  LK +
Sbjct:  145 VLPVPFMNVINGGSHAGGRLAFQEFMIVPSEAPSFTEAMRQGAEVYQILKTL 196

[Close]

BLAST of FC931043 vs. ExPASy Swiss-Prot
Match: ENO_CRYPA (Enolase OS=Cryphonectria parasitica GN=ENO1 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.872e-50
Identity = 84/146 (57.53%), Postives = 107/146 (73.29%), Query Frame = 1

Query:   94 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPAL--AGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNR 522
            I+ + AR ++DSRGNPTVEVD+ T  G + RA VPSGASTG +EA ELRDG  S +LGKGV KAV NVN ++GP L  AG D  +QTA+D ++++ LDGT N     K KLGANAIL VSLA+ KAGA  K +PLY H+++L+G +
Sbjct:    3 ISKIHARYVYDSRGNPTVEVDLVTETG-LHRAIVPSGASTGQHEACELRDGDKSKWLGKGVLKAVENVNTVLGPELIKAGLDVKDQTAVDEFLIK-LDGTAN-----KTKLGANAILGVSLAVAKAGAAEKGVPLYAHVSDLAGTK 141

HSP 2 Score: 68.9366 bits (167), Expect = 5.872e-50
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 3

Query:  528 VLPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAV 683
            VLPVP  NV+NGGSHAG +LA QEFMI+P  A  F E ++ G E YH LK++
Sbjct:  145 VLPVPFQNVLNGGSHAGGRLAFQEFMIVPSAAPSFSEGLRWGAETYHQLKSL 196

[Close]

BLAST of FC931043 vs. ExPASy Swiss-Prot
Match: ENO_GRAFK (Enolase OS=Gramella forsetii (strain KT0803) GN=eno PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.873e-50
Identity = 84/144 (58.33%), Postives = 100/144 (69.44%), Query Frame = 1

Query:   94 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAICKAGAHVKKIPLYKHIAELSGNRI 525
            I  + ARQIFDSRGNPTVEVDV T +G + RAAVPSGASTG +EA+ELRDGG D++GKGV KAV NVN  I   L G    EQ  ID  M+  LDGT N     K KLGANAIL VSLA+ KA A+   +PLY+++  +S N +
Sbjct:    4 ILDIHARQIFDSRGNPTVEVDVYTENGIMGRAAVPSGASTGEHEAVELRDGGKDFMGKGVQKAVDNVNGEIADHLLGFSVFEQNLIDQTMI-DLDGTPN-----KSKLGANAILGVSLAVAKAAANELNMPLYRYVGGVSANTL 141

HSP 2 Score: 67.781 bits (164), Expect = 5.873e-50
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 3

Query:  531 LPVPAFNVINGGSHAGNKLAMQEFMILPVGASCFQEAMKMGVEVYHHLKAV 683
            LPVP  N+INGGSH+   +A QEFMI+PV A  F  A+KMG E++H+LK V
Sbjct:  141 LPVPMMNIINGGSHSDAPIAFQEFMIMPVMADSFSHALKMGTEIFHNLKNV 191

The following BLAST results are available for this feature:

BLAST of FC931043 vs. ExPASy Swiss-Prot

BLAST of FC931043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
ENO1_DEBHA	9.186e-51	57.43	Enolase 1 OS=Debaryomyces hansenii GN=ENO1 PE=3 SV...	[more]
ENO_ANATD	9.187e-51	59.15	Enolase OS=Anaerocellum thermophilum (strain DSM 6...	[more]
ENO_PSEAE	1.198e-50	59.15	Enolase OS=Pseudomonas aeruginosa GN=eno PE=3 SV=1	[more]
ENO_PSEAB	1.198e-50	59.15	Enolase OS=Pseudomonas aeruginosa (strain UCBPP-PA...	[more]
ENO_PSEA8	1.198e-50	59.15	Enolase OS=Pseudomonas aeruginosa (strain LESB58) ...	[more]
ENO_PSEA7	1.198e-50	59.15	Enolase OS=Pseudomonas aeruginosa (strain PA7) GN=...	[more]
ENO_PSEMY	1.561e-50	59.86	Enolase OS=Pseudomonas mendocina (strain ymp) GN=e...	[more]
ENO_TUBBO	3.456e-50	57.53	Enolase OS=Tuber borchii GN=eno-1 PE=1 SV=1	[more]
ENO_CRYPA	5.872e-50	57.53	Enolase OS=Cryphonectria parasitica GN=ENO1 PE=3 S...	[more]
ENO_GRAFK	5.873e-50	58.33	Enolase OS=Gramella forsetii (strain KT0803) GN=en...	[more]

Pages

Properties


Property Name	Value
Genbank description	C34100G09EF PostHarvP1 Citrus clementina cDNA clone C34100G09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931043 ID=FC931043; Name=FC931043; organism=Citrus clementina; type=EST; length=684bp
GACTTAATCCAAGACTCTTCTCGCACTCACAGACTCTCTCTCTCGTTCTA
GATCTTTCTTCGGTTTTCCAGCTTTCAGAAAATGGCAATAACCATCACTG
CCGTCAAAGCCAGGCAGATCTTTGACAGCCGTGGAAATCCAACGGTGGAG
GTCGACGTGACAACATCAGATGGCCACGTGGCTAGAGCTGCTGTTCCAAG
CGGTGCATCCACCGGAATTTATGAGGCGCTTGAACTAAGAGACGGAGGCT
CTGATTACCTAGGCAAGGGTGTATCGAAGGCTGTTAGCAATGTCAACGCC
ATCATTGGCCCTGCACTCGCTGGCAAGGACCCAACTGAGCAGACTGCTAT
TGACAACTATATGGTACAACAACTTGATGGAACTGTAAATGAGTGGGGTT
GGTGCAAACAGAAGCTTGGAGCAAACGCCATTTTGGCTGTCTCCCTAGCT
ATCTGCAAGGCTGGTGCACATGTCAAGAAGATTCCTCTTTACAAGCATAT
TGCCGAACTCTCTGGTAACAGAATTTGGTGTTGCCAGTGCCAGCATTCAA
TGTCATTAATGGTGGATCACATGCTGGAAACAAACTTGCTATGCAGGAGT
TTATGATTCTTCCTGTAGGAGCTTCCTGTTTTCAAGAAGCCATGAAGATG
GGTGTAGAAGTATATCACCATCTGAAGGCTGTGA