FC931045

Overview
NameFC931045
Unique NameFC931045
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15171 contig Ccv1_Contig15171:323..1047. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSM_CAMJE (Cysteine synthase B OS=Campylobacter jejuni GN=cysM PE=3 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 4.240e-37
Identity = 94/226 (41.59%), Postives = 122/226 (53.98%), Query Frame = 3
Query:   45 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGF 722
            +   VS+LIG TP++ L K     G  +  K E   P+ SIKDR A  M++DA +   I+   TTI+E TSGN GIS+A + A  G K +  MP   SLERR  +  FGA L LT    GM G V KA E+L +TPN+FM+ QF N +N   H + T  EI  D   ++DIFV             + LK +   V I GVEP  S +L+ G+ G H I G G  F
Sbjct:    3 VHEKVSELIGNTPIIHLKKF----GINVFAKCEFLNPSHSIKDRAAFEMIKDALDSKKINQD-TTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMITLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILRDLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGVEPLNSPLLSKGEAGSHKIQGIGANF 223          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSM_PSEAE (Cysteine synthase B OS=Pseudomonas aeruginosa GN=cysM PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.445e-37
Identity = 84/212 (39.62%), Postives = 122/212 (57.55%), Query Frame = 3
Query:   57 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGP 692
            ++  +G TPLV L ++       + VK E   P  S+KDRPA++M+  AE +  I PG T +IE TSGN GI++A  AA+KGYKM+L MP  ++ ER+  M A+GA+LIL    +GM G  +   + L+      +L QF+N  N   H+ +TGPEIW+ T G +  FV             +YLK QNP V+I G++P E + + G +  P
Sbjct:    8 IADCVGNTPLVRLQRLPGETSNTLLVKLEGNNPAGSVKDRPALSMITRAELRGDIRPGDT-LIEATSGNTGIALAMAAAIKGYKMILIMPDNSTAERKAAMTAYGAELILVSKEEGMEG-ARDLADKLQREGRGKVLDQFANGDNPEAHYHSTGPEIWQQTGGSITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPMEGSAIPGIRRWP 217          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSM_SALTY (Cysteine synthase B OS=Salmonella typhimurium GN=cysM PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.748e-36
Identity = 87/212 (41.04%), Postives = 120/212 (56.60%), Query Frame = 3
Query:   57 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGP 692
            + Q IG TPLV L ++    G+ I VK E   P  S+KDR A++M+ +AE +  I PG   +IE TSGN GI++A +AA+KGY+M L MP   S ERR  MRA+GA+LIL    +GM G    A  + E      +L QF+NP N   H+ TTGPEIW  T G++  FV             ++L+ Q   V I G++P E + + G +  P
Sbjct:    4 LEQTIGNTPLVKLQRLGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV-LIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALAMSERGEGK-LLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITGVSRFLREQEKPVTIVGLQPEEGSSIPGIRRWP 213          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSK_BUCAP (Cysteine synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=cysK PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.687e-36
Identity = 95/235 (40.43%), Postives = 129/235 (54.89%), Query Frame = 3
Query:   45 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLE-STPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKI--YGVEPAESNI----LNGG--KPGPHLITGNGVGF 722
            I  D S  IG TPLV LN +  G    I  K E   P+ S+K R    M+ DAE K  ++     IIE TSGN GI++A++AA + Y + L MP   S+ERR  +++ GA LILT+   GM G + KA E++  +T    +L+QF NPAN  +H +TTGPEIW+DT G +DI +             +Y+K +     +    VEP ES +    L+G   KPG H I G G GF
Sbjct:    4 IYEDNSFTIGNTPLVRLNNIGNG---NILAKIESRNPSFSVKCRIGANMIWDAEKKGRLNKN-IEIIEATSGNTGIALAYVAAARNYSLTLIMPDSMSIERRKLLKSLGAHLILTNGKHGMKGAISKANEIVSLNTKRYLLLKQFENPANPEIHQKTTGPEIWKDTKGNIDILISGVGTGGTITGITKYIKIKEGKKDLISVAVEPLESPVITQFLSGKKIKPGLHKIQGIGAGF 234          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSM_ECOLI (Cysteine synthase B OS=Escherichia coli (strain K12) GN=cysM PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.122e-36
Identity = 84/212 (39.62%), Postives = 123/212 (58.02%), Query Frame = 3
Query:   57 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGP 692
            + Q IG TPLV L ++    G+ + +K E   P  S+KDR A++M+ +AE +  I PG   +IE TSGN GI++A +AA+KGY+M L MP   S ERR  MRA+GA+LIL    +GM G    A E + +     +L QF+NP N   H+ TTGPEIW+ T G++  FV             ++++ Q+  V I G++P E + + G +  P
Sbjct:    4 LEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV-LIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALE-MANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWP 213          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSM_AQUAE (Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.155e-34
Identity = 83/214 (38.79%), Postives = 123/214 (57.48%), Query Frame = 3
Query:   27 DLPATNIKRDVSQLIGRTPLVFLNK-VSEGCGAYIAV--KQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFM-LQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPA 656
            D P    +  + +L+G TPLV + K + E     + +  K E F P  S+KDRPA++M  DA  + LI  GK  +I+ TSGN GI++A + A  G  + L MP+  S ER+  ++AFGA L LTDP +G  G +   +EL++  P  ++ L Q++NPAN + HF +TG EIW  T G++  FV             + LK  NPN+++ GV+PA
Sbjct:   15 DEPYRKARETILKLVGNTPLVRVKKCLPEDIPEDVEIWAKLESFNPGGSVKDRPALSMFLDALKRGLIKEGKV-VIDATSGNTGIALAMVGAALGVPVELAMPANVSEERKKIIKAFGAKLYLTDPLEGTDGAILFVRELVQKYPEKYVYLDQYNNPANWKAHFYSTGIEIWNQTKGRITHFVAGIGTGGTIMGTGRRLKIYNPNIQVIGVQPA 227          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: MCCA_BACSU (O-acetylserine dependent cystathionine beta-synthase OS=Bacillus subtilis GN=mccA PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.844e-33
Identity = 83/223 (37.22%), Postives = 116/223 (52.02%), Query Frame = 3
Query:   54 DVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGF 722
            D+++LIG TPL+ L       G  +  K EM  P  SIKDR    ++ DA +   + PG   IIE T+GN GI +A  A   G K +  +P + S E++  M+A GA +I T    GM G ++KA +L     N++ + QF N  N   +++T GPE+WE   G +  FV              +LK +NP VK   VEP  S ILNGG+P  H   G G+ F
Sbjct:    6 DITELIGNTPLLRLKNFDVPEGVAVYAKLEMMNPGGSIKDRLGDMLIRDALDSGKVKPGGV-IIEATAGNTGIGLALSARKYGLKAIFCVPEHFSREKQQIMQALGASIIHTPRQDGMQGAIQKAIQLETEIENSYCVLQFKNRVNPSTYYKTLGPEMWEALDGNIHTFVAGAGSGGTFAGTASFLKEKNPAVKTVIVEPVGS-ILNGGEPHAHKTEGIGMEF 226          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSM_HELPJ (Cysteine synthase OS=Helicobacter pylori J99 GN=cysM PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.714e-33
Identity = 83/220 (37.73%), Postives = 123/220 (55.91%), Query Frame = 3
Query:   69 IGRTPLVFLNKVSEGCGAYIAV--KQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGF 722
            IGRTP+    +         A+  K E   P  S+KDR    ++++A     I+   TTIIEPT+GN GI++A +A     K +  +P   S E++  MRA GA +I T  ++G+ G +KK++EL ES P++++  QF NP N   ++ T  PEI ++    +  FV             +YLK + PN+++ GVEP E +ILNGG+PGPH I G GV F
Sbjct:   10 IGRTPIFKFTRKDYPIPLKSAIYAKLEHLNPGGSVKDRLGQYLIKEAFRTRKIT-STTTIIEPTAGNTGIALALVAIKHHLKTIFVVPKKFSTEKQQIMRALGALVINTPTSEGISGAIKKSKELAESIPDSYLPLQFENPDNPAAYYHTLAPEIVQELGTNLTSFVAGIGSGGTFAGMAKYLKERIPNIRLIGVEP-EGSILNGGEPGPHEIEGIGVEF 227          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSM_MYCTU (Cysteine synthase B OS=Mycobacterium tuberculosis GN=cysM PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.274e-33
Identity = 83/204 (40.69%), Postives = 113/204 (55.39%), Query Frame = 3
Query:   63 QLIGRTPLVFLNKVS-------EGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEP 653
            Q +G TPLV L ++S       +G    +  K E   PT SIKDRPAV M+E AE   L+ PG  TI+EPTSGN GIS+A  A +KGY+++  MP  TS+ERR  +  +GA +I +    G    V  A+EL  + P+  ML Q+ NPANT  H+  TGPE+  D + ++  FV             ++L+    NVKI   EP
Sbjct:    9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLAD-LPEITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEP 210          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSM_MYCBO (Cysteine synthase B OS=Mycobacterium bovis GN=cysM PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.274e-33
Identity = 83/204 (40.69%), Postives = 113/204 (55.39%), Query Frame = 3
Query:   63 QLIGRTPLVFLNKVS-------EGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEP 653
            Q +G TPLV L ++S       +G    +  K E   PT SIKDRPAV M+E AE   L+ PG  TI+EPTSGN GIS+A  A +KGY+++  MP  TS+ERR  +  +GA +I +    G    V  A+EL  + P+  ML Q+ NPANT  H+  TGPE+  D + ++  FV             ++L+    NVKI   EP
Sbjct:    9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLAD-LPEITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEP 210          
The following BLAST results are available for this feature:
BLAST of FC931045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSM_CAMJE4.240e-3741.59Cysteine synthase B OS=Campylobacter jejuni GN=cys... [more]
CYSM_PSEAE9.445e-3739.62Cysteine synthase B OS=Pseudomonas aeruginosa GN=c... [more]
CYSM_SALTY2.748e-3641.04Cysteine synthase B OS=Salmonella typhimurium GN=c... [more]
CYSK_BUCAP4.687e-3640.43Cysteine synthase OS=Buchnera aphidicola subsp. Sc... [more]
CYSM_ECOLI6.122e-3639.62Cysteine synthase B OS=Escherichia coli (strain K1... [more]
CYSM_AQUAE1.155e-3438.79Cysteine synthase OS=Aquifex aeolicus GN=cysM PE=3... [more]
MCCA_BACSU2.844e-3337.22O-acetylserine dependent cystathionine beta-syntha... [more]
CYSM_HELPJ3.714e-3337.73Cysteine synthase OS=Helicobacter pylori J99 GN=cy... [more]
CYSM_MYCTU8.274e-3340.69Cysteine synthase B OS=Mycobacterium tuberculosis ... [more]
CYSM_MYCBO8.274e-3340.69Cysteine synthase B OS=Mycobacterium bovis GN=cysM... [more]

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Properties
Property NameValue
Genbank descriptionC34100G11EF PostHarvP1 Citrus clementina cDNA clone C34100G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931045 ID=FC931045; Name=FC931045; organism=Citrus clementina; type=EST; length=725bp
CTCAGAGACTCAGAGATTTGCCCAAGGATCTTCCAGCTACCAACATCAAG
AGAGATGTTTCCCAGCTCATTGGAAGAACCCCGCTTGTGTTTCTTAACAA
AGTCAGTGAAGGATGTGGAGCTTATATTGCTGTCAAGCAAGAAATGTTCC
AACCCACTGCTAGCATCAAGGACAGACCAGCAGTGGCCATGCTCGAAGAT
GCAGAAAATAAAAACTTAATTTCTCCCGGAAAGACCACTATCATAGAGCC
CACGTCAGGGAACATGGGAATAAGCATGGCGTTTATGGCAGCAATGAAAG
GGTATAAGATGGTTCTAACTATGCCCTCTTATACAAGCTTGGAGAGGAGA
GTGACAATGAGAGCATTTGGAGCTGATTTAATCCTCACAGATCCAGCCAA
GGGGATGGGAGGAACTGTTAAGAAGGCTCAAGAACTTTTGGAATCCACAC
CAAATGCTTTCATGCTTCAACAATTTTCAAATCCTGCCAATACGCGGGTT
CATTTTGAGACAACTGGTCCTGAGATATGGGAGGATACGATGGGACAAGT
AGACATCTTTGTAATGGGAATCGGTAGTGGAGGAACAGTCTCTGGTGTCG
GGCAGTATCTTAAATCTCAAAATCCTAATGTTAAGATCTATGGAGTGGAA
CCAGCTGAAAGTAATATATTGAATGGGGGCAAACCAGGTCCTCATCTCAT
TACTGGCAATGGCGTTGGATTCAAA
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