FC931045

Overview
NameFC931045
Unique NameFC931045
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15171 contig Ccv1_Contig15171:323..1047. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CBS_YEAST (Cystathionine beta-synthase OS=Saccharomyces cerevisiae GN=CYS4 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.367e-27
Identity = 73/213 (34.27%), Postives = 116/213 (54.46%), Query Frame = 3
Query:   48 KRDVSQLIGRTPLVFLNKVSEGCGA--YIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGT---VKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIF------VMXXXXXXXXXXXXQYLKSQNPNVKIYGVEP 653
            + +V  L+G TPL+ L K+ +  G    I  K E++ P  SIKDR A +M+E+AE    I P ++T+IEPTSGN GI +A + A+KGY+ ++T+P   S E+   ++A GA++I T  A         +  A++L +  P A +L Q++N  N   H+  TG EI +  +  +++F      V             +YLK QN  ++I G +P
Sbjct:   11 RHNVIDLVGNTPLIALKKLPKALGIKPQIYAKLELYNPGGSIKDRIAKSMVEEAEASGRIHPSRSTLIEPTSGNTGIGLALIGAIKGYRTIITLPEKMSNEKVSVLKALGAEIIRTPTAAAWDSPESHIGVAKKLEKEIPGAVILDQYNNMMNPEAHYFGTGREI-QRQLEDLNLFDNLRAVVAGAGTGGTISGISKYLKEQNDKIQIVGADP 222          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSK_DICDI (Cysteine synthase OS=Dictyostelium discoideum GN=cysK PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.169e-24
Identity = 68/213 (31.92%), Postives = 101/213 (47.42%), Query Frame = 3
Query:   39 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGT---VKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNI 668
            + I   + + +G TPL+ +  +SE  G  I  K E   P  S KDR A  ++ D E K L+  G +TI+E T+G+ GIS+  +   +GY + L +P   S E+   +   GA+  +  P  GM      +  A +       AF   QF N +N   H+  T  EIWE T G VD FV              YLK  NPN++ + ++P  S +
Sbjct:   36 SGISNGIIETVGNTPLIRIKSLSEATGCEIYGKAEFMNPGGSPKDRVAREIILDGEKKGLLKKG-STIVEATAGSTGISLTMLGKSRGYNVQLFIPDNVSKEKVDLLEMLGAETKIV-PIVGMNNANHFMHCAYQRCLGDDMAFYANQFDNLSNFNAHYNGTAKEIWEQTKGDVDGFVAAAGTGGTVAGISSYLKEVNPNIQNWLIDPPGSGL 246          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSK_YEAST (Putative cysteine synthase OS=Saccharomyces cerevisiae GN=YGR012W PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.324e-22
Identity = 68/214 (31.78%), Postives = 107/214 (50.00%), Query Frame = 3
Query:    6 RLRDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTT-IIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL------ILTDPAKGMGGTVKKAQELLESTPN--AFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQ 620
            + RD+P+       K  V +LIG TPLV +  +++  G  I  K E+  P  S KDR A+ +++ AE    +  G+   + E TSG+ GIS+A +    GY+  +++P  TSLE+   + + GA +       + DP + +    K   EL +S     A    QF N AN +VH++TTGPEI   T G +D F+             ++LK +
Sbjct:   38 KTRDIPRP------KEGVEELIGNTPLVKIRSLTKATGVNIYAKLELCNPAGSAKDRVALNIIKTAEELGELVRGEPGWVFEGTSGSTGISIAVVCNALGYRAHISLPDDTSLEKLALLESLGATVNKVKPASIVDPNQYVNAAKKACNELKKSGNGIRAVFADQFENEANWKVHYQTTGPEIAHQTKGNIDAFIAGCGTGGTITGVAKFLKER 245          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSK2_SCHPO (Cysteine synthase 2 OS=Schizosaccharomyces pombe GN=cys12 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.258e-22
Identity = 69/219 (31.51%), Postives = 105/219 (47.95%), Query Frame = 3
Query:   42 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAE-NKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI------LTDPAKGMGGTVKKAQE--LLESTPN-AFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNI 668
            +I   V  LIG T +V +  +S+  G  I  K E   P  S KDR A+ M+  AE N +L+      + E T+G+ GIS+A +    GY   + MPS  S E+   +   GA +       + DP   +    + A    + ES P   +   QF NPAN + HF +TGPEIW    G++D F+             +YLKS++P++ +   +P  S +
Sbjct:   41 DIVNGVEGLIGNTKMVRIKSLSQATGCDILAKAEFLNPGNSPKDRVALQMIRTAEENGDLVPYQSNAVYEGTAGSTGISIAMLCCSLGYDSRIYMPSDQSKEKSDILELLGAHVQRVTPAPIVDPNHFVNTARRNAANHTVDESIPGKGYFANQFENPANWQAHFNSTGPEIWRQCAGKLDAFIAGSGTGGTIAGISRYLKSKDPSITVCLADPPGSGL 259          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSM_RALME (Cysteine synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=cysM PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.037e-16
Identity = 51/206 (24.76%), Postives = 94/206 (45.63%), Query Frame = 3
Query:   57 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGG----TVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAES 662
            + + IG TPLV L ++     A +  K E+  P  S+KDRPA  ++E    +  I P  + +IE +SGN+ I++A +  +KG +    +    S      +R +GA +         GG     +++ +++L    +A  + Q++NP N   H+     EI        D+ V+            + L+   P++++ GV+   S
Sbjct:    6 IIESIGNTPLVQLRRLFGRADAEVFAKLELLNPAGSVKDRPARYIVEKGLTEGAIGP-HSHVIESSSGNLAIALAMICGLKGLRFTAVVDPKISPTNLKILRCYGAGIEQVTAKDSQGGYLETRIERVRQMLREQRDAIWINQYANPLNWESHYYGEAAEILAQLAQPADVLVLGVSTSGTVHGIARRLRKAWPSMRVVGVDAVGS 210          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: Y4XP_RHISN (Putative cysteine synthase OS=Rhizobium sp. (strain NGR234) GN=NGR_a00730 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.733e-14
Identity = 71/227 (31.28%), Postives = 108/227 (47.58%), Query Frame = 3
Query:   57 VSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADL--ILTDPAKGMGGTVKK---AQELLESTPNAFMLQQFSNPANTRVHFETTG--PEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPG-PHLITGNG 713
            V+QLIG+TP++ ++    G  A + +K E   P  S+KDR A +M+  A     + PG T I+E +SGN G  +A  A   G + +  +  + + ++   MRA GA++  +  D  +     V++   A +L    P A  + Q  NPAN   +   TG   E+       +D FV             Q LK  NP V+   VEPA S +   GKPG P+  +G G
Sbjct:    6 VTQLIGQTPVMSIDV--PGRNATLVLKIEKNNPGGSMKDRMARSMVIAALQDGRLPPGGT-IVESSSGNTGTGLALAALEFGLRFIAVVDHHAAPDKIRMMRALGAEIRYVEGDFREDEVAVVERQRLAAQLGAQLPGALFMNQSDNPANPEGY---TGLVDELVAQLPDGIDAFVGCVGTGGSMTGISQRLKRNNPAVRTIAVEPAGSIVF--GKPGHPYYQSGTG 224          
The following BLAST results are available for this feature:
BLAST of FC931045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CBS_YEAST1.367e-2734.27Cystathionine beta-synthase OS=Saccharomyces cerev... [more]
CYSK_DICDI9.169e-2431.92Cysteine synthase OS=Dictyostelium discoideum GN=c... [more]
CYSK_YEAST1.324e-2231.78Putative cysteine synthase OS=Saccharomyces cerevi... [more]
CYSK2_SCHPO2.258e-2231.51Cysteine synthase 2 OS=Schizosaccharomyces pombe G... [more]
CYSM_RALME7.037e-1624.76Cysteine synthase OS=Ralstonia metallidurans (stra... [more]
Y4XP_RHISN1.733e-1431.28Putative cysteine synthase OS=Rhizobium sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC34100G11EF PostHarvP1 Citrus clementina cDNA clone C34100G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931045 ID=FC931045; Name=FC931045; organism=Citrus clementina; type=EST; length=725bp
CTCAGAGACTCAGAGATTTGCCCAAGGATCTTCCAGCTACCAACATCAAG
AGAGATGTTTCCCAGCTCATTGGAAGAACCCCGCTTGTGTTTCTTAACAA
AGTCAGTGAAGGATGTGGAGCTTATATTGCTGTCAAGCAAGAAATGTTCC
AACCCACTGCTAGCATCAAGGACAGACCAGCAGTGGCCATGCTCGAAGAT
GCAGAAAATAAAAACTTAATTTCTCCCGGAAAGACCACTATCATAGAGCC
CACGTCAGGGAACATGGGAATAAGCATGGCGTTTATGGCAGCAATGAAAG
GGTATAAGATGGTTCTAACTATGCCCTCTTATACAAGCTTGGAGAGGAGA
GTGACAATGAGAGCATTTGGAGCTGATTTAATCCTCACAGATCCAGCCAA
GGGGATGGGAGGAACTGTTAAGAAGGCTCAAGAACTTTTGGAATCCACAC
CAAATGCTTTCATGCTTCAACAATTTTCAAATCCTGCCAATACGCGGGTT
CATTTTGAGACAACTGGTCCTGAGATATGGGAGGATACGATGGGACAAGT
AGACATCTTTGTAATGGGAATCGGTAGTGGAGGAACAGTCTCTGGTGTCG
GGCAGTATCTTAAATCTCAAAATCCTAATGTTAAGATCTATGGAGTGGAA
CCAGCTGAAAGTAATATATTGAATGGGGGCAAACCAGGTCCTCATCTCAT
TACTGGCAATGGCGTTGGATTCAAA
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