FC931048

Overview
NameFC931048
Unique NameFC931048
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931048_ssr29 microsatellite FC931048_ssr29:29..38. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig165 contig Ccv1_Contig165:45..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KCY_RAT (UMP-CMP kinase OS=Rattus norvegicus GN=Cmpk1 PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 8.038e-38
Identity = 84/167 (50.30%), Postives = 113/167 (67.66%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKFGRL 650
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGKIVP E+TI LL++ M++     +  +KFLIDGFPRN++N   +      K +  FVLFFDC+ E    R L R  + GR DDN E++ KR + +LES+ P++  YE  GK  ++
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIDRCLERGKSSGRSDDNRESLEKRIQTYLESTKPIIDLYEEMGKVKKI 175          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KCY_HUMAN (UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 1.050e-37
Identity = 83/167 (49.70%), Postives = 113/167 (67.66%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKFGRL 650
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGKIVP E+TI LL++ M++     +  +KFLIDGFPRN++N   +      K +  FVLFFDC+ E    R L R  + GR DDN E++ KR + +L+S+ P++  YE  GK  ++
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKI 175          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KCY_PIG (UMP-CMP kinase OS=Sus scrofa GN=CMPK1 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.339e-37
Identity = 82/167 (49.10%), Postives = 113/167 (67.66%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKFGRL 650
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IK+GKIVP E+TI LL++ M++     +  +KFLIDGFPRN++N   +      K +  FVLFFDC+ E    R L R  + GR DDN E++ KR + +L+S+ P++  YE  GK  ++
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKI 175          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD1_CAEEL (Probable adenylate kinase isoenzyme F38B2.4 OS=Caenorhabditis elegans GN=F38B2.4 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.887e-37
Identity = 81/162 (50.00%), Postives = 110/162 (67.90%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM---EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKFGRL 650
            +GGPGSGKGTQC  IV  +G THLS+GDLLR E+KSGS  G  +  +++ G +VP EV + L+++AM    E G+  FLIDG+PR       FE+  + E + VLFFD +EE + +R+L+R Q  GR DDN +TI+KR   F+ S+ PVV YYE+KGK  R+
Sbjct:   26 VGGPGSGKGTQCDKIVAKYGLTHLSSGDLLRDEVKSGSPRGAQLTAIMESGALVPLEVVLDLVKEAMLKAIEKGSKGFLIDGYPREVAQGQQFESEIQ-EAKLVLFFDVAEETLVKRLLHRAQTSGRADDNADTIKKRLHTFVTSTAPVVDYYESKGKLVRI 186          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: UMPK_SCHPO (Probable uridylate kinase OS=Schizosaccharomyces pombe GN=SPCC1795.05c PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.676e-33
Identity = 75/160 (46.88%), Postives = 109/160 (68.12%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEI-KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGK 638
            LGGPG+GKGTQC  + E F  + H+SAGD LR E  + GS+ G +I+  IK+GKIVP E+TI LL+  M+E    G DKFLIDGFPR  +    FE  +    +F L+F C +E M +R+++R +  GR DDN+E+I+KRF  + ++S+PVV+Y +++ +
Sbjct:    8 LGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKIVPMEITISLLETKMKECHDKGIDKFLIDGFPREMDQCEGFEK-SVCPAKFALYFRCGQETMLKRLIHRGKTSGRSDDNIESIKKRFVTYTKASMPVVEYLKSQNR 166          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD1_RAT (Adenylate kinase isoenzyme 1 OS=Rattus norvegicus GN=Ak1 PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 4.564e-33
Identity = 69/156 (44.23%), Postives = 105/156 (67.31%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM--EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKG 635
            +GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGS  G M+ +++++G++VP E  + +L+ AM  +   ++ FLIDG+PR  +    FE     +P  +L+ D   E M +R+L R +  GR DDN ETI+KR + + +++ PV+ +Y+ +G
Sbjct:   14 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSSRGKMLSSIMEKGELVPLETVLDMLRDAMLAKVDSSNGFLIDGYPREVKQGEEFERKI-AQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVISFYDKRG 168          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD1_CYPCA (Adenylate kinase isoenzyme 1 OS=Cyprinus carpio GN=ak1 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.961e-33
Identity = 72/157 (45.86%), Postives = 106/157 (67.52%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM--EESGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKG 635
            +GGPGSGKGTQC  IVE +GYTHLS+GDLLRAE+ SGSE G  +Q ++++G++VP +  + +++ AM  +   +  +LIDG+PR  +    FE   KI  P  +L+ D   E M +R++ R Q  GR DDN ETI+KR  ++ +++ PV+ YYE +G
Sbjct:   14 VGGPGSGKGTQCEKIVEKYGYTHLSSGDLLRAEVASGSERGKQLQAIMQKGELVPLDTVLDMIKDAMIAKADVSKGYLIDGYPREVKQGEEFE--KKIGAPALLLYIDAKAETMVQRLMKRGQTSGRSDDNEETIKKRLDLYYKATEPVIAYYETRG 168          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD1_PIG (Adenylate kinase isoenzyme 1 OS=Sus scrofa GN=AK1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.017e-32
Identity = 72/157 (45.86%), Postives = 105/157 (66.88%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM--EESGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKG 635
            +GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGS  G M+  ++++G++VP E  + +L+ AM  +   +  FLIDG+PR  +    FE   KI +P  +L+ D   E M +R+L R +  GR DDN ETI+KR + + +++ PV+ +YE +G
Sbjct:   14 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFE--RKIGQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRG 168          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD1_BOVIN (Adenylate kinase isoenzyme 1 OS=Bos taurus GN=AK1 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.017e-32
Identity = 70/156 (44.87%), Postives = 103/156 (66.03%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM--EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKG 635
            +GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGS  G M+  ++++G++VP E  + +L+ AM  +   +  FLIDG+PR  +    FE     +P  +L+ D   E M +R+L R +  GR DDN ETI+KR + + +++ PV+ +YE +G
Sbjct:   14 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVQQGEEFER-RIAQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRG 168          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD1_RABIT (Adenylate kinase isoenzyme 1 OS=Oryctolagus cuniculus GN=AK1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.265e-32
Identity = 69/156 (44.23%), Postives = 101/156 (64.74%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKG 635
            +GGPGSGKGTQC  IV  +GYTHLS GDLLRAE+ SGS  G  +  ++++G++VP E  + +L+ AM    +    FLIDG+PR  +    FE     +P  +L+ D   E M++R+L R +  GR DDN ETI+KR + + +++ PV+ +YE +G
Sbjct:   14 VGGPGSGKGTQCEKIVHKYGYTHLSTGDLLRAEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKADTSKGFLIDGYPRQVQQGEEFER-RIAQPTLLLYVDAGPETMQKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRG 168          
The following BLAST results are available for this feature:
BLAST of FC931048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KCY_RAT8.038e-3850.30UMP-CMP kinase OS=Rattus norvegicus GN=Cmpk1 PE=1 ... [more]
KCY_HUMAN1.050e-3749.70UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3[more]
KCY_PIG2.339e-3749.10UMP-CMP kinase OS=Sus scrofa GN=CMPK1 PE=1 SV=1[more]
KAD1_CAEEL8.887e-3750.00Probable adenylate kinase isoenzyme F38B2.4 OS=Cae... [more]
UMPK_SCHPO2.676e-3346.88Probable uridylate kinase OS=Schizosaccharomyces p... [more]
KAD1_RAT4.564e-3344.23Adenylate kinase isoenzyme 1 OS=Rattus norvegicus ... [more]
KAD1_CYPCA5.961e-3345.86Adenylate kinase isoenzyme 1 OS=Cyprinus carpio GN... [more]
KAD1_PIG1.017e-3245.86Adenylate kinase isoenzyme 1 OS=Sus scrofa GN=AK1 ... [more]
KAD1_BOVIN1.017e-3244.87Adenylate kinase isoenzyme 1 OS=Bos taurus GN=AK1 ... [more]
KAD1_RABIT2.265e-3244.23Adenylate kinase isoenzyme 1 OS=Oryctolagus cunicu... [more]

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Properties
Property NameValue
Genbank descriptionC34100H02EF PostHarvP1 Citrus clementina cDNA clone C34100H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931048 ID=FC931048; Name=FC931048; organism=Citrus clementina; type=EST; length=699bp
CTGCCTTCTTTCTTTCCCTCCATATTCTTCTCTCTCTCTTTACCAAAACA
ACGCTCGCAATTCGCTAAGATCGGTTATTCAGACTGAGTTAGTTGGCGCT
GATGGGAACTGTGGTTGAAACTCCTGTCAAGGAAGCAGATGCTACCGTAA
CTGTGAAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGACCAGGCAGTGGA
AAAGGAACCCAGTGCGCAAACATTGTTGAACACTTTGGATACACCCATCT
CAGTGCTGGTGATCTTCTCAGAGCCGAAATCAAATCTGGCTCTGAAAATG
GAACCATGATTCAGAACATGATTAAAGAGGGAAAAATCGTTCCTTCAGAG
GTCACAATTAAGCTTCTCCAAAAAGCAATGGAGGAAAGTGGAAATGATAA
ATTTCTCATCGATGGTTTTCCCAGAAACGAGGAAAATCGTGCTGCATTTG
AAGCTGTTACCAAAATTGAGCCAGAATTCGTTCTGTTTTTTGACTGTTCT
GAGGAGGAGATGGAGAGGCGCATTTTGAATAGGAATCAGGGAAGAGAAGA
TGATAACGTTGAGACAATTAGGAAGCGGTTTAAGGTTTTCTTAGAATCTA
GTCTCCCTGTGGTTCAATATTATGAAGCTAAGGGTAAGTTCGGAAGATTG
ATGCTGCAAAGCCTGTTGCAGAGGTTTTGATGCTGTTAAGCTGTTTTAC
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