FC931048

Overview
NameFC931048
Unique NameFC931048
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931048_ssr29 microsatellite FC931048_ssr29:29..38. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig165 contig Ccv1_Contig165:45..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD_XANCB (Adenylate kinase OS=Xanthomonas campestris pv. campestris (strain B100) GN=adk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.019e-24
Identity = 63/163 (38.65%), Postives = 103/163 (63.19%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEA-VTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKFGRL 650
            LG PGSGKGTQ A + + F   H+S GDLLRAE+ +GS  G   + ++  G +V  E+ + +L+  + ++   + F++DG+PRN     A ++ ++KI +P + V+  D + E +  RI  R   +GREDDN E++RKR +V+ +S+ PV+ +YE +GK  R+
Sbjct:    6 LGPPGSGKGTQAARLKDTFQIPHISTGDLLRAEVAAGSPLGVKAKEVMARGDLVSDEILLGMLEARLGQADVANGFILDGYPRNVAQANALDSLLSKIGQPLDAVVQLDVASELLVERIAGRAKAEGREDDNPESVRKRLQVYTDSTAPVIGFYEQRGKLARV 168          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD_XANCP (Adenylate kinase OS=Xanthomonas campestris pv. campestris GN=adk PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.331e-24
Identity = 63/163 (38.65%), Postives = 103/163 (63.19%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEA-VTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKFGRL 650
            LG PGSGKGTQ A + + F   H+S GDLLRAE+ +GS  G   + ++  G +V  E+ + +L+  + ++   + F++DG+PRN     A ++ ++KI +P + V+  D + E +  RI  R   +GREDDN E++RKR +V+ +S+ PV+ +YE +GK  R+
Sbjct:    6 LGPPGSGKGTQAARLKDTFQIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDEILLGMLEARLGQADVANGFILDGYPRNVAQANALDSLLSKIGQPLDAVVQLDVASELLVERIAGRAKAEGREDDNPESVRKRLQVYTDSTAPVIGFYEQRGKLARV 168          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD_XANC8 (Adenylate kinase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=adk PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.331e-24
Identity = 63/163 (38.65%), Postives = 103/163 (63.19%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEA-VTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKFGRL 650
            LG PGSGKGTQ A + + F   H+S GDLLRAE+ +GS  G   + ++  G +V  E+ + +L+  + ++   + F++DG+PRN     A ++ ++KI +P + V+  D + E +  RI  R   +GREDDN E++RKR +V+ +S+ PV+ +YE +GK  R+
Sbjct:    6 LGPPGSGKGTQAARLKDTFQIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDEILLGMLEARLGQADVANGFILDGYPRNVAQANALDSLLSKIGQPLDAVVQLDVASELLVERIAGRAKAEGREDDNPESVRKRLQVYTDSTAPVIGFYEQRGKLARV 168          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD_XANC5 (Adenylate kinase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=adk PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24
Identity = 63/163 (38.65%), Postives = 101/163 (61.96%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRN-EENRAAFEAVTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKFGRL 650
            LG PGSGKGTQ   + + F   H+S GDLLRAE+ +GS  G   + ++  G +V  ++ + +L+  + ++   K F++DG+PRN  +  A  E + KI +P + V+  D + E +  RI  R   +GREDDN E++RKR +V+ +S+ PV+ +YE +GK  R+
Sbjct:    6 LGPPGSGKGTQATRLKDTFDIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDDILLGMLEARLGQADVAKGFILDGYPRNVAQANALDELLGKIGQPLDAVVQLDVASELLVERIAGRAKAEGREDDNPESVRKRLQVYTDSTAPVIGFYEQRGKLARV 168          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD_XANAC (Adenylate kinase OS=Xanthomonas axonopodis pv. citri GN=adk PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24
Identity = 63/163 (38.65%), Postives = 101/163 (61.96%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRN-EENRAAFEAVTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKFGRL 650
            LG PGSGKGTQ   + + F   H+S GDLLRAE+ +GS  G   + ++  G +V  ++ + +L+  + ++   K F++DG+PRN  +  A  E + KI +P + V+  D + E +  RI  R   +GREDDN E++RKR +V+ +S+ PV+ +YE +GK  R+
Sbjct:    6 LGPPGSGKGTQATRLKDTFDIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDDILLGMLEARLGQADVAKGFILDGYPRNVAQANALDELLGKIGQPLDAVVQLDVASELLVERIAGRAKAEGREDDNPESVRKRLQVYTDSTAPVIGFYEQRGKLARV 168          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD_CORU7 (Adenylate kinase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=adk PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 60/155 (38.71%), Postives = 92/155 (59.35%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK 632
            LG PG+GKGTQ   + +     H+S GDL RA I  G+E G   Q  +  GK+VP+EVT  +++  +EE+   + FL+DGFPR  E     E + K   ++ + V+ +  SE+ +  R+L+R  GR DDN  TIR R +V+ E + P++ YY+ +
Sbjct:    6 LGPPGAGKGTQAQLLSDALNIPHISTGDLFRANISQGTELGKQAQEYMDAGKLVPTEVTANMVRARLEEADAANGFLLDGFPRTIEQADLLEEMLKEKDLKLDAVINYQVSEDVVVERMLSR--GRNDDNESTIRTRLQVYREETAPLIDYYQGR 158          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD_NAUPA (Adenylate kinase OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=adk PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 66/159 (41.51%), Postives = 88/159 (55.35%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK----IEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGK 638
            +G PGSGK T    I E       H S GDLLRAE+ SGSE G  I++ I  G +VP E+ I  ++ A+E++  D  LIDGFPR+ E   A + + K    IE   V+  + SE+    R+L R +G  DDNVE    R KVF E    +  +Y A+GK
Sbjct:    8 IGAPGSGKTTDAELIAERNSDKIVHYSTGDLLRAEVASGSELGQTIKSYIDNGNLVPLEIVINTIKSAIEKAPKDIVLIDGFPRSVEQMKALDEMLKNTDDIELVSVIEVEVSEDVARERVLGRARG-ADDNVEVFNNRMKVFTEPLKDIQDFYSAQGK 165          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD_XANOR (Adenylate kinase OS=Xanthomonas oryzae pv. oryzae GN=adk PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.472e-23
Identity = 62/163 (38.04%), Postives = 101/163 (61.96%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRN-EENRAAFEAVTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKFGRL 650
            LG PGSGKGTQ   + + F   H+S GDLLRAE+ +GS  G   + ++  G +V  ++ + +L+  + ++   K F++DG+PRN  +  A    ++KI +P + V+  D + E +  RI  R   +GREDDN E++RKR +V+ +S+ PV+ +YE +GK  R+
Sbjct:    6 LGPPGSGKGTQATRLKDTFEIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDDILLGMLEARLGQADVAKGFILDGYPRNVAQANALCALLSKIGQPLDAVVQLDVASELLVERIAGRAKAEGREDDNPESVRKRLQVYTDSTAPVIGFYEQRGKLTRV 168          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD_XANOM (Adenylate kinase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=adk PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.472e-23
Identity = 62/163 (38.04%), Postives = 101/163 (61.96%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRN-EENRAAFEAVTKI-EP-EFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKFGRL 650
            LG PGSGKGTQ   + + F   H+S GDLLRAE+ +GS  G   + ++  G +V  ++ + +L+  + ++   K F++DG+PRN  +  A    ++KI +P + V+  D + E +  RI  R   +GREDDN E++RKR +V+ +S+ PV+ +YE +GK  R+
Sbjct:    6 LGPPGSGKGTQATRLKDTFEIPHISTGDLLRAEVAAGSPLGLKAKEVMARGDLVSDDILLGMLEARLGQADVAKGFILDGYPRNVAQANALCALLSKIGQPLDAVVQLDVASELLVERIAGRAKAEGREDDNPESVRKRLQVYTDSTAPVIGFYEQRGKLTRV 168          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD_SYNR3 (Adenylate kinase OS=Synechococcus sp. (strain RCC307) GN=adk PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.472e-23
Identity = 59/161 (36.65%), Postives = 99/161 (61.49%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEP-EFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKFGRLM 653
            +G PG+GKGTQ   +  + G  HLS GDLLRAE+K+GSE G   + ++  G++V   + + +++  + +S +  +L+DGFPRN     A +A+     +P + VL  +  ++E+ +R+L R  GR DDN E IR R  V+ E + P++ +YE +G+  R++
Sbjct:    8 VGPPGAGKGTQAERLAANHGLLHLSTGDLLRAEVKAGSELGKEAEAVMNRGELVSDALVLAIVRSRL-QSHSGGWLLDGFPRNLAQAEALDALLSELNQPLQSVLLMELDDDELVQRLLAR--GRADDNEEVIRHRLSVYREQTAPLINHYEQRGQLKRVV 165          
The following BLAST results are available for this feature:
BLAST of FC931048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_XANCB1.019e-2438.65Adenylate kinase OS=Xanthomonas campestris pv. cam... [more]
KAD_XANCP1.331e-2438.65Adenylate kinase OS=Xanthomonas campestris pv. cam... [more]
KAD_XANC81.331e-2438.65Adenylate kinase OS=Xanthomonas campestris pv. cam... [more]
KAD_XANC53.873e-2438.65Adenylate kinase OS=Xanthomonas campestris pv. ves... [more]
KAD_XANAC3.873e-2438.65Adenylate kinase OS=Xanthomonas axonopodis pv. cit... [more]
KAD_CORU76.606e-2438.71Adenylate kinase OS=Corynebacterium urealyticum (s... [more]
KAD_NAUPA1.127e-2341.51Adenylate kinase OS=Nautilia profundicola (strain ... [more]
KAD_XANOR1.472e-2338.04Adenylate kinase OS=Xanthomonas oryzae pv. oryzae ... [more]
KAD_XANOM1.472e-2338.04Adenylate kinase OS=Xanthomonas oryzae pv. oryzae ... [more]
KAD_SYNR31.472e-2336.65Adenylate kinase OS=Synechococcus sp. (strain RCC3... [more]

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Properties
Property NameValue
Genbank descriptionC34100H02EF PostHarvP1 Citrus clementina cDNA clone C34100H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931048 ID=FC931048; Name=FC931048; organism=Citrus clementina; type=EST; length=699bp
CTGCCTTCTTTCTTTCCCTCCATATTCTTCTCTCTCTCTTTACCAAAACA
ACGCTCGCAATTCGCTAAGATCGGTTATTCAGACTGAGTTAGTTGGCGCT
GATGGGAACTGTGGTTGAAACTCCTGTCAAGGAAGCAGATGCTACCGTAA
CTGTGAAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGACCAGGCAGTGGA
AAAGGAACCCAGTGCGCAAACATTGTTGAACACTTTGGATACACCCATCT
CAGTGCTGGTGATCTTCTCAGAGCCGAAATCAAATCTGGCTCTGAAAATG
GAACCATGATTCAGAACATGATTAAAGAGGGAAAAATCGTTCCTTCAGAG
GTCACAATTAAGCTTCTCCAAAAAGCAATGGAGGAAAGTGGAAATGATAA
ATTTCTCATCGATGGTTTTCCCAGAAACGAGGAAAATCGTGCTGCATTTG
AAGCTGTTACCAAAATTGAGCCAGAATTCGTTCTGTTTTTTGACTGTTCT
GAGGAGGAGATGGAGAGGCGCATTTTGAATAGGAATCAGGGAAGAGAAGA
TGATAACGTTGAGACAATTAGGAAGCGGTTTAAGGTTTTCTTAGAATCTA
GTCTCCCTGTGGTTCAATATTATGAAGCTAAGGGTAAGTTCGGAAGATTG
ATGCTGCAAAGCCTGTTGCAGAGGTTTTGATGCTGTTAAGCTGTTTTAC
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