FC931048

Overview
NameFC931048
Unique NameFC931048
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931048_ssr29 microsatellite FC931048_ssr29:29..38. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig165 contig Ccv1_Contig165:45..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD_WOLSU (Adenylate kinase OS=Wolinella succinogenes GN=adk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 57/158 (36.08%), Postives = 87/158 (55.06%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF----VLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG 635
            +G PGSGK T    I ++      H S G+LLRAE+ SGSE G +I+    +G +VP E+ ++ +  A++ +  +  LIDG+PR+ E   A + + K E +     V+  + SE+    R+L R +G  DDN E  R R  V+L    P+  +Y AKG
Sbjct:    8 IGAPGSGKTTDAEIIAKNNPDSINHYSTGELLRAEVASGSERGKIIEGFTSKGNLVPLEIVVETIVSAIKNAPKNVVLIDGYPRSTEQMEALDKILKEESDVELTNVIEVEVSEQVACDRVLGRARG-ADDNAEVFRNRMSVYLAPLKPIQAFYTAKG 164          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD_PROMA (Adenylate kinase OS=Prochlorococcus marinus GN=adk PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 54/155 (34.84%), Postives = 95/155 (61.29%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFE-AVTKIEP--EFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG 635
            LG PG+GKGTQ + I +  G+ HLS GDLLR E+  G++ G   + ++ +G++V  E+ I +++K + +  ++ +L+DGFPRN    +  +  + +I    E VL  +  +E +  R+L R  GR+DDN   I+ R K++ + + P+V +Y+ +G
Sbjct:    8 LGPPGAGKGTQASLICKDQGFLHLSTGDLLREEVSGGTDLGKKAELIMNKGELVSDEIVISIVEKRLIKY-SEGWLLDGFPRNLAQASLLQNLLGRISQPIEIVLLIEIDDEILTERMLGR--GRKDDNKAVIKNRLKIYKDQTSPLVDHYKKQG 159          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD_PROMP (Adenylate kinase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=adk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 52/152 (34.21%), Postives = 98/152 (64.47%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE 626
            LG PG+GKGTQ A +     Y HLS G+LLR EI   ++ G  +++++  G++V  ++ +++++K +++  N+ +++DG+PRN  + N      +   +P E V + D  +E + +R+L R  GR+DDN +TI+ R K++ E++ P+++YY+
Sbjct:    8 LGPPGAGKGTQAALLSAANSYLHLSTGELLRKEIDLDTDLGKQVKDIMNRGELVSDQLVLEIVKKNLDKD-NNGWILDGYPRNLSQVNSLNDVLININQPLEIVFYLDIPDEVLIKRLLIR--GRKDDNEKTIKTRLKIYKETTEPLIEYYK 156          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD_CORGL (Adenylate kinase OS=Corynebacterium glutamicum GN=adk PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 60/155 (38.71%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKFLIDGFPRNEENR---AAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK 632
            LG PG+GKGTQ A + E  G  H+S GDL RA I  G+  G   +  I  GK+VP++VT +++   + ES   + FL+DGFPR  E     A   +      + V+ +  SE+ +  R+L+R  GR DDN ETIR R  V+ + + P++ +Y  K
Sbjct:    6 LGPPGAGKGTQAAILSEKLGIPHISTGDLFRANIGEGTPLGIEAKQYIDAGKLVPTDVTARMVASRLAESDAAEGFLLDGFPRTVEQADILANLLSEAGQTLDGVVNYQVSEDVVVERMLSR--GRADDNEETIRTRLGVYRDETAPLIDHYGDK 158          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD_CORGB (Adenylate kinase OS=Corynebacterium glutamicum (strain R) GN=adk PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 60/155 (38.71%), Postives = 88/155 (56.77%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKFLIDGFPRNEENR---AAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK 632
            LG PG+GKGTQ A + E  G  H+S GDL RA I  G+  G   +  I  GK+VP++VT +++   + ES   + FL+DGFPR  E     A   +      + V+ +  SE+ +  R+L+R  GR DDN ETIR R  V+ + + P++ +Y  K
Sbjct:    6 LGPPGAGKGTQAAILSEKLGIPHISTGDLFRANIGEGTPLGIEAKQYIDAGKLVPTDVTARMVASRLAESDAAEGFLLDGFPRTVEQADILANLLSEAGQTLDGVVNYQVSEDVVVERMLSR--GRADDNEETIRTRLGVYRDETAPLIDHYGDK 158          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD_RHOE4 (Adenylate kinase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=adk PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 58/153 (37.91%), Postives = 85/153 (55.56%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ-KAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE 626
            LG PG+GKGTQ A + E FG  H+S GDL RA I   +  G   +  I  G++VPS +T  +++ +  E    + FL+DGFPR+ E   A E + K      + VL F   E+ +  R+L R  GR DD  + IR R +V+ + + P+  YY+
Sbjct:    6 LGPPGAGKGTQAAILSEKFGVPHISTGDLFRANIGQATALGVEAKKYIDAGELVPSSITNDMVKARVAEPDAANGFLLDGFPRSVEQAQALEGILKDLDTRLDGVLSFVVDEDIVVERMLAR--GRADDTEDVIRNRLRVYRDETSPLFDYYK 156          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD_PARL1 (Adenylate kinase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=adk PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 58/162 (35.80%), Postives = 90/162 (55.56%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAV-----TKIEPEFVLFFDCS--EEEMERRILNRNQG-REDDNVETIRKRFKVFLESSLPVVQYYEAKGK 638
            LG PG+GKGTQ   + E  G   LS GD+LRA +  GSE G + + ++  G++VP +V + ++   +E+    + +++DGFPRN     A + +     T ++    L  D S   + +E R      G R DDN E + KR KV+ E + P++ YY+AKGK
Sbjct:    6 LGPPGAGKGTQAKRLEEAHGLVQLSTGDMLRAAVAQGSEVGKVAEGIMARGELVPDDVVVGIIADRIEQPDAVNGYILDGFPRNVAQAEALDKMLAGKGTTLDAVVELGVDDSILLKRIETRAAETAGGPRADDNAEALAKRLKVYHEQTAPLIAYYKAKGK 167          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD_NATPD (Adenylate kinase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=adk PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 58/182 (31.87%), Postives = 95/182 (52.20%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQG-------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKFGRL 650
            LG PG+GKGTQ +NIV+ +G  H++ GD LRA     +E+GT  +  ++ G++VP  V  +++Q A++E+  D F++DG+PRN         +T +  + V   D   +E+  R+  R                            R+DD  ET+ +R  VF E++ PV+ YYE +G+  R+
Sbjct:    9 LGAPGAGKGTQSSNIVDEYGVDHITTGDALRANKDMETEHGTP-REFMEAGELVPDPVVNEIVQAAIDEA--DGFVLDGYPRNLSQAEYLSDITDV--DVVALLDVGRDELVDRLTGRRMDPETGDIYHTEFNMPDDEEVRERLVQRDDDTEETVNERLDVFDENTQPVIDYYEDEGELVRI 185          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD_FLAPJ (Adenylate kinase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=adk PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 59/160 (36.88%), Postives = 92/160 (57.50%), Query Frame = 3
Query:  183 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAA---FEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDD-NVETIRKRFKVFLESSLPVVQYYEAKGKF 641
            G PG+GKGTQ   + E +  THLS GD+ R  IK+ +E G + +  + +G +VP  VTIK+L+  ++++ + K FL DGFPR     AA   F A    E    +  +  +E + +R+L R +  GR DD + E IR R++ + E + P++ YY+   KF
Sbjct:    8 GKPGAGKGTQAEFLKEKYNLTHLSTGDIFRFNIKNETELGKLAKTFMDKGDLVPDAVTIKMLESEVDKNQHSKGFLFDGFPRTLAQAAALDTFLASKDQEVTATIALEADDEILVQRLLERGKTSGRVDDQDEEKIRNRYQEYNEKTAPLMSYYKNNKKF 167          
BLAST of FC931048 vs. ExPASy Swiss-Prot
Match: KAD_CAMC5 (Adenylate kinase OS=Campylobacter curvus (strain 525.92) GN=adk PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 59/156 (37.82%), Postives = 83/156 (53.21%), Query Frame = 3
Query:  180 LGGPGSGKGTQCANIV-EHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF----VLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK 632
            +G PGSGK T  + I  E   Y H S GDLLRAE+ SGSE G  I + I +G +VP EV +  +  A++ S     +IDG+PR+ E     + V   + E     V+  D SE     R+L R +G  DDN E    R KV+L+    + ++Y+ K
Sbjct:    8 IGAPGSGKTTDASLIAKEDDKYAHFSTGDLLRAEVASGSELGKKIDSFISKGNLVPLEVVVNAIISAIKGSEKSNIIIDGYPRSVEQMTELDKVLSAQNEINLRGVIEVDVSEAIARERVLGRARG-ADDNNEVFNNRMKVYLDPIEAIRKFYKGK 162          
The following BLAST results are available for this feature:
BLAST of FC931048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_WOLSU8.928e-2136.08Adenylate kinase OS=Wolinella succinogenes GN=adk ... [more]
KAD_PROMA8.928e-2134.84Adenylate kinase OS=Prochlorococcus marinus GN=adk... [more]
KAD_PROMP1.166e-2034.21Adenylate kinase OS=Prochlorococcus marinus subsp.... [more]
KAD_CORGL1.166e-2038.71Adenylate kinase OS=Corynebacterium glutamicum GN=... [more]
KAD_CORGB1.166e-2038.71Adenylate kinase OS=Corynebacterium glutamicum (st... [more]
KAD_RHOE41.523e-2037.91Adenylate kinase OS=Rhodococcus erythropolis (stra... [more]
KAD_PARL11.523e-2035.80Adenylate kinase OS=Parvibaculum lavamentivorans (... [more]
KAD_NATPD1.523e-2031.87Adenylate kinase OS=Natronomonas pharaonis (strain... [more]
KAD_FLAPJ1.523e-2036.88Adenylate kinase OS=Flavobacterium psychrophilum (... [more]
KAD_CAMC51.523e-2037.82Adenylate kinase OS=Campylobacter curvus (strain 5... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34100H02EF PostHarvP1 Citrus clementina cDNA clone C34100H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931048 ID=FC931048; Name=FC931048; organism=Citrus clementina; type=EST; length=699bp
CTGCCTTCTTTCTTTCCCTCCATATTCTTCTCTCTCTCTTTACCAAAACA
ACGCTCGCAATTCGCTAAGATCGGTTATTCAGACTGAGTTAGTTGGCGCT
GATGGGAACTGTGGTTGAAACTCCTGTCAAGGAAGCAGATGCTACCGTAA
CTGTGAAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGACCAGGCAGTGGA
AAAGGAACCCAGTGCGCAAACATTGTTGAACACTTTGGATACACCCATCT
CAGTGCTGGTGATCTTCTCAGAGCCGAAATCAAATCTGGCTCTGAAAATG
GAACCATGATTCAGAACATGATTAAAGAGGGAAAAATCGTTCCTTCAGAG
GTCACAATTAAGCTTCTCCAAAAAGCAATGGAGGAAAGTGGAAATGATAA
ATTTCTCATCGATGGTTTTCCCAGAAACGAGGAAAATCGTGCTGCATTTG
AAGCTGTTACCAAAATTGAGCCAGAATTCGTTCTGTTTTTTGACTGTTCT
GAGGAGGAGATGGAGAGGCGCATTTTGAATAGGAATCAGGGAAGAGAAGA
TGATAACGTTGAGACAATTAGGAAGCGGTTTAAGGTTTTCTTAGAATCTA
GTCTCCCTGTGGTTCAATATTATGAAGCTAAGGGTAAGTTCGGAAGATTG
ATGCTGCAAAGCCTGTTGCAGAGGTTTTGATGCTGTTAAGCTGTTTTAC
back to top