FC931049

Overview
NameFC931049
Unique NameFC931049
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931049_ssr22 microsatellite FC931049_ssr22:22..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13706 contig Ccv1_Contig13706:22..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931049 vs. ExPASy Swiss-Prot
Match: IF2G_DROME (Eukaryotic translation initiation factor 2 subunit 3 OS=Drosophila melanogaster GN=Su(var)3-9 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.662e-62
Identity = 124/172 (72.09%), Postives = 141/172 (81.98%), Query Frame = 2
Query:  203 KGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENC--RMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ---HRSTWQLLK 703
            + L +QDLS LDV+KL PLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKC++ +CPRP  + +  S K+D+  C      NC    +L+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NESCPQPQ   H +  +++K
Sbjct:   12 RNLQKQDLSNLDVSKLTPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNPKCPRPASFVSDASSKDDSLPCT---RLNCSGNFRLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMK 180          
BLAST of FC931049 vs. ExPASy Swiss-Prot
Match: IF2G_DICDI (Eukaryotic translation initiation factor 2 subunit 3 OS=Dictyostelium discoideum GN=eif2s3 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.167e-62
Identity = 117/160 (73.12%), Postives = 132/160 (82.50%), Query Frame = 2
Query:  197 SRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ 676
            ++  L  QD+  L+V +L PL+P VISRQATINIGTIGHVAHGKSTVVKAISGV TVRF +E +RNITIKLGYANAKIYKC++ +C RP CYK+  S  EDNP C+ PG    RM LLRHVSFVDCPGHD+LMATMLNGAA+MD ALLLIA NESCPQPQ
Sbjct:    5 NKPNLSVQDVKLLNVNELTPLTPNVISRQATINIGTIGHVAHGKSTVVKAISGVLTVRFTSEFKRNITIKLGYANAKIYKCDNPQCERPGCYKSARSNTEDNPQCERPGCGG-RMTLLRHVSFVDCPGHDVLMATMLNGAAVMDAALLLIAGNESCPQPQ 163          

HSP 2 Score: 25.0238 bits (53), Expect = 3.167e-62
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  664 PATTTSEHLAAVEIM 708
            P   TSEH+AA+EIM
Sbjct:  160 PQPQTSEHIAAIEIM 174          
BLAST of FC931049 vs. ExPASy Swiss-Prot
Match: IF2G_ENCCU (Eukaryotic translation initiation factor 2 subunit gamma OS=Encephalitozoon cuniculi GN=ECU01_0700 PE=3 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 4.712e-51
Identity = 97/137 (70.80%), Postives = 112/137 (81.75%), Query Frame = 2
Query:  266 EVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ 676
            E++ +QAT+NIGTIGHVAHGKST+VKAISG+ T++FK ELERNITIKLGYANAKIYKC D +C RP CY+++GS   D   C   G     +KL+RHVSFVDCPGHD+LMATMLNG AIMD  LLLIAANE CPQPQ
Sbjct:    6 EIMKKQATLNIGTIGHVAHGKSTIVKAISGISTIKFKAELERNITIKLGYANAKIYKC-DSKCVRPNCYQSFGSSSPDRLSCKKCG---GTLKLVRHVSFVDCPGHDVLMATMLNGTAIMDAVLLLIAANEPCPQPQ 138          

HSP 2 Score: 22.7126 bits (47), Expect = 4.712e-51
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  664 PATTTSEHLAAVEIM 708
            P   T+EHL AVEIM
Sbjct:  135 PQPQTTEHLFAVEIM 149          
BLAST of FC931049 vs. ExPASy Swiss-Prot
Match: IF2G_SPIVO (Eukaryotic translation initiation factor 2 subunit gamma (Fragment) OS=Spironucleus vortens PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.532e-31
Identity = 67/134 (50.00%), Postives = 88/134 (65.67%), Query Frame = 2
Query:  305 IGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQHRSTWQLLKS 706
            IGHVAHGKST+ K ++GV  ++F  E   NITIKLG+ANAKI++C+D  C  P  Y +  S   D P C  P  +    +LLRH+S +DCPGH   M TML+G A MDG LLLI+A + CPQ Q R  +Q +++
Sbjct:    1 IGHVAHGKSTLCKVLTGVDPIKFAAEKVNNITIKLGFANAKIFECKD--CAAPKNYFSQKSSSPDQPPC--PTCKGTHTQLLRHISIIDCPGHHDYMTTMLSGVAAMDGTLLLISAEQRCPQEQTREHFQAIQA 130          
BLAST of FC931049 vs. ExPASy Swiss-Prot
Match: IF2G_METTH (Translation initiation factor 2 subunit gamma OS=Methanobacterium thermoautotrophicum GN=eif2g PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.285e-30
Identity = 71/135 (52.59%), Postives = 90/135 (66.67%), Query Frame = 2
Query:  272 ISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ 676
            +  Q+ INIG +GHV HGK+T+ KA+SGV T     E +R I+I+LGYA+    KC   +C  PMCY           +C+  G E    +LLR VSFVD PGH+ LMATML+GAA+MDGA+L+IAANE CPQPQ
Sbjct:    1 MKNQSEINIGLVGHVDHGKTTLTKALSGVWTDTHSEETKRGISIRLGYADITFRKCP--QCEAPMCYTTA-------EICERCGTET---ELLRKVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQ 123          
BLAST of FC931049 vs. ExPASy Swiss-Prot
Match: IF2G_AERPE (Translation initiation factor 2 subunit gamma OS=Aeropyrum pernix GN=eif2g PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.191e-30
Identity = 66/133 (49.62%), Postives = 89/133 (66.92%), Query Frame = 2
Query:  278 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ 676
            RQ  +NIG +GHV HGK+T+V+A++GV T+R   E+ R +TIKLGYA+ ++++CE    P               P+C+          L R VS+VD PGH+ILMATML+GAA+MDGALL++AANE CPQPQ
Sbjct:    7 RQPEVNIGVVGHVDHGKTTLVQALTGVWTMRHSEEIRRGMTIKLGYADGEVWECEGCGFPERF---------SPEPVCECD--PQASASLRRRVSYVDAPGHEILMATMLSGAALMDGALLVVAANEPCPQPQ 128          
BLAST of FC931049 vs. ExPASy Swiss-Prot
Match: IF2G_METAC (Translation initiation factor 2 subunit gamma OS=Methanosarcina acetivorans GN=eif2g PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.862e-30
Identity = 73/145 (50.34%), Postives = 89/145 (61.38%), Query Frame = 2
Query:  248 LHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRH--VSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ 676
            LH         Q  +NIG +GHV HGK+T+VKA+SGV T     E++R I+I+LGYA++   KC   +CP P CY            C      NC  K   H  VSFVD PGH+ LMATML+GAAIMDGA+L+IAANE CPQPQ
Sbjct:   27 LHSTGGNYNLSQPCVNIGMVGHVDHGKTTLVKALSGVWTDTHSEEVKRGISIRLGYADSPFMKCP--KCPAPQCYTV-------EKTCP-----NCGEKTEEHRIVSFVDAPGHETLMATMLSGAAIMDGAVLVIAANEECPQPQ 157          
BLAST of FC931049 vs. ExPASy Swiss-Prot
Match: IF2G_ARCFU (Translation initiation factor 2 subunit gamma OS=Archaeoglobus fulgidus GN=eif2g PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.862e-30
Identity = 70/129 (54.26%), Postives = 89/129 (68.99%), Query Frame = 2
Query:  290 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ 676
            +NIG +GHV HGK+T+V A+SGV T R   EL+R I+IKLGYA+A   KC +  C  P  Y           +C + G E    ++LR VSFVD PGH++LMATML+GAAIMDGA+L+IAANE CP+PQ
Sbjct:   26 VNIGLVGHVDHGKTTLVAALSGVWTDRHSEELKRGISIKLGYADATFRKCPE--CEPPEAYTV-------EEICPIHGVET---EILRTVSFVDSPGHEMLMATMLSGAAIMDGAVLVIAANEKCPRPQ 142          
BLAST of FC931049 vs. ExPASy Swiss-Prot
Match: IF2G_METMA (Translation initiation factor 2 subunit gamma OS=Methanosarcina mazei GN=eif2g PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.376e-30
Identity = 70/134 (52.24%), Postives = 87/134 (64.93%), Query Frame = 2
Query:  281 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRH--VSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQ 676
            Q  +NIG +GHV HGK+T+V+A+SGV T     E++R I+I+LGYA++   KC   +CP P CY            C      NC  K   H  VSFVD PGH+ LMATML+GAAIMDGA+L+IAANE CPQPQ
Sbjct:   26 QPCVNIGMVGHVDHGKTTLVRALSGVWTDTHSEEVKRGISIRLGYADSPFMKCP--KCPEPQCYTV-------EKTCP-----NCGEKTEEHRTVSFVDAPGHETLMATMLSGAAIMDGAVLVIAANEDCPQPQ 145          
BLAST of FC931049 vs. ExPASy Swiss-Prot
Match: IF2G_SULSO (Translation initiation factor 2 subunit gamma OS=Sulfolobus solfataricus GN=eif2g PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.088e-29
Identity = 68/138 (49.28%), Postives = 89/138 (64.49%), Query Frame = 2
Query:  281 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGS----GKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQHR 682
            Q  +NIG +GHV HGK+T+V+AI+G+ T +   EL+R +TIKLGYA   I  CE   C +P  Y    S    G +D P            K LR +SF+D PGH++LMATML+GAA+MDGA+L++AANE  PQPQ R
Sbjct:    7 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCES--CKKPEAYVTEPSCKSCGSDDEP------------KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTR 130          
The following BLAST results are available for this feature:
BLAST of FC931049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
IF2G_DROME1.662e-6272.09Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_DICDI3.167e-6273.13Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_ENCCU4.712e-5170.80Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_SPIVO7.532e-3150.00Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_METTH1.285e-3052.59Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_AERPE2.191e-3049.62Translation initiation factor 2 subunit gamma OS=A... [more]
IF2G_METAC2.862e-3050.34Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_ARCFU2.862e-3054.26Translation initiation factor 2 subunit gamma OS=A... [more]
IF2G_METMA6.376e-3052.24Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_SULSO1.088e-2949.28Translation initiation factor 2 subunit gamma OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC34100H03EF PostHarvP1 Citrus clementina cDNA clone C34100H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931049 ID=FC931049; Name=FC931049; organism=Citrus clementina; type=EST; length=710bp
GCAAAACCTAAAATTCTCTCTCACACACACACCCTCTCACAATCAATATA
GCGGTAAACCTCAGTCAAATCTCGGTCTCGCAGTCGTTCTCCGGCCGCAA
CTTGCTCTGCATTCAATCAGTTTTACGGGCTTGAACATTACTAGTGGCAA
TACAGACAATAAGGAGAGGGGTATTTTCAAAGAAACAGGCAAGATGTCAC
GGAAGGGTTTGATGGAACAGGACTTGAGTAAGTTGGATGTAACTAAGTTG
CATCCTCTTTCTCCTGAAGTCATTTCTCGCCAGGCTACTATTAATATTGG
AACTATCGGTCATGTGGCCCATGGCAAATCAACTGTTGTGAAGGCAATAT
CTGGTGTTCAGACTGTTCGTTTTAAGAATGAATTAGAGCGTAACATTACT
ATCAAGCTTGGATATGCAAATGCCAAGATATACAAATGTGAAGATGATCG
TTGCCCACGACCAATGTGCTATAAGGCATATGGAAGTGGGAAAGAAGATA
ATCCTCTGTGCGATGTGCCTGGTTTTGAGAACTGCAGGATGAAATTGCTT
AGGCATGTCTCTTTTGTTGATTGCCCGGGTCATGATATTCTTATGGCTAC
AATGCTTAATGGAGCAGCAATTATGGATGGAGCATTGCTTCTCATAGCAG
CCAATGAAAGTTGCCCGCAACCACAACATCGGAGCACTTGGCAGCTGTTG
AAATCATGCG
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