FC931060

Overview
NameFC931060
Unique NameFC931060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: AB9G_ARATH (ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.553e-27
Identity = 68/188 (36.17%), Postives = 114/188 (60.64%), Query Frame = 1
Query:   73 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 630
            +L  ++G  +PG + A++G SG+GKT+L+  L GR  +  G + G+I  +  P  +    R +G+  Q D   P++T+ E+L+++A LRL +    +++      VM  + L   +D ++G P + G+S  +RKR++I  E++ NPS++F+DEPTSGLD+  A  ++  +      GRTVV TIHQPS
Sbjct:   66 ILKGLTGIVKPGEILAMLGPSGSGKTSLLTALGGRVGEGKGKLTGNISYNNKPLSKAV-KRTTGFVTQDDALYPNLTVTETLVFTALLRLPNSFKKQEKIKQAKAVMTELGLDRCKDTIIGGPFLRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTTAQRIVSILWELARGGRTVVTTIHQPS 252          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: YO075_YEAST (Uncharacterized ABC transporter ATP-binding protein/permease YOL075C OS=Saccharomyces cerevisiae GN=YOL075C/YOL074C PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.028e-27
Identity = 77/219 (35.16%), Postives = 128/219 (58.45%), Query Frame = 1
Query:   73 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE-GDIKI----------SGYPKKQETFAR--------VSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLM 669
            L+++ S     G + A+MG SG+GKTTL++VLA + +GG    G I+              PK+     +        +  Y  Q D+ SP +T  E+L ++A L+L+S   TKK  + V++++E + LK   D LVG     GLS  +++RL+I  ++++NPSI+F+DEPT+GLDA +A +V++T++    + GRT + +IHQP  DI    D++ ++
Sbjct:   44 LVNTFSMDLPSGSVMAVMGGSGSGKTTLLNVLASKISGGLTHNGSIRYVLEDTGSEPNETEPKRAHLDGQDHPIQKHVIMAYLPQQDVLSPRLTCRETLKFAADLKLNSSERTKK--LMVEQLIEELGLKDCADTLVGDNSHRGLSGGEKRRLSIGTQMISNPSIMFLDEPTTGLDAYSAFLVIKTLKKLAKEDGRTFIMSIHQPRSDILFLLDQVCIL 260          

HSP 2 Score: 116.316 bits (290), Expect = 1.453e-25
Identity = 65/207 (31.40%), Postives = 121/207 (58.45%), Query Frame = 1
Query:   70 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-----EGDIKISGYPKKQETFARVSGYCEQTDIHS-PHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLM 669
            ++L SV+  F+PG++ A+MG SG+GK++L+++++GR            G I  +     +  F  V  Y  Q D H    +T+ E+L Y+A LRL    + ++ +   D ++  + LK   + ++G   V G+S  +++R+T+ V+L+ +P I+ +DEPTSGLD+  +A ++  +     + G+T++ TIHQP  ++F+ F  +LL+
Sbjct:  708 EILQSVNAIFKPGMINAIMGPSGSGKSSLLNLISGRLKSSVFAKFDTSGSIMFNDIQVSELMFKNVCSYVSQDDDHLLAALTVKETLKYAAALRLHHLTEAERMER-TDNLIRSLGLKHCENNIIGNEFVKGISGGEKRRVTMGVQLLNDPPILLLDEPTSGLDSFTSATILEILEKLCREQGKTIIITIHQPRSELFKRFGNVLLL 913          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: ABCG5_MOUSE (ATP-binding cassette sub-family G member 5 OS=Mus musculus GN=Abcg5 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.649e-27
Identity = 67/204 (32.84%), Postives = 120/204 (58.82%), Query Frame = 1
Query:   70 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRL---SSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 669
            Q+L  VS     G +  ++G SG+GKTTL+D ++GR +  G +EG++ ++G   +++ F     Y  Q+D+    +T+ E+L Y+A L L   S+D   KK    V+ VM  + L  + D ++G     G+S+ +R+R++IA +L+ +P ++ +DEPT+GLD   A  ++  +       R V+ TIHQP  ++F+ FD++ ++
Sbjct:   68 QILKDVSLYIESGQIMCILGSSGSGKTTLLDAISGRLRRTGTLEGEVFVNGCELRRDQFQDCFSYVLQSDVFLSSLTVRETLRYTAMLALCRSSADFYNKK----VEAVMTELSLSHVADQMIGSYNFGGISSGERRRVSIAAQLLQDPKVMMLDEPTTGLDCMTANQIVLLLAELARRDRIVIVTIHQPRSELFQHFDKIAIL 267          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: ABCG3_MOUSE (ATP-binding cassette sub-family G member 3 OS=Mus musculus GN=Abcg3 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.459e-27
Identity = 73/201 (36.32%), Postives = 116/201 (57.71%), Query Frame = 1
Query:   67 LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 669
            ++ L ++SG  +PG L A+MG     ++ L+DVLA R+    + GDI I+G P+    F   SGY  Q D+    VT+ ++L +SA LRL   +   +++  ++EV+EL+ L   ++       +   S E RKR +IA+ELV    I+F+D+PT+GLD R    V+  +R     GRT++ +I+QP   IF+ FD L L+
Sbjct:   61 IERLSNISGIMKPG-LNAIMGPQDGSRSLLLDVLAARRDPRGLSGDILINGKPRPAN-FKCTSGYVPQNDVVLGTVTVRDNLEFSAALRLPVTITRDEKRRRINEVLELLHLNKEQN-------IKPRSKELRKRTSIAMELVTEHPILFLDDPTTGLDLRTTTDVILVLRRMSKKGRTIIFSINQPQYSIFKFFDSLTLV 252          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: ABCG8_MOUSE (ATP-binding cassette sub-family G member 8 OS=Mus musculus GN=Abcg8 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.707e-27
Identity = 69/199 (34.67%), Postives = 115/199 (57.79%), Query Frame = 1
Query:   76 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE-GDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 669
            + ++S   R G + A++G SG G+ +L+DV+ GR  GG ++ G I I+G P   +   +   +  Q D   P++T+ E+L + A +RL       +R   V++V+  + L+   +  VG   V G+S  +R+R++I V+L+ NP I+ +DEPTSGLD+  A  ++ T+       R V+ ++HQP  DIF  FD +LLM
Sbjct:   89 IRNLSFKVRSGQMLAIIGSSGCGRASLLDVITGRGHGGKMKSGQIWINGQPSTPQLVRKCVAHVRQHDQLLPNLTVRETLAFIAQMRLPRTFSQAQRDKRVEDVIAELRLRQCANTRVGNTYVRGVSGGERRRVSIGVQLLWNPGILILDEPTSGLDSFTAHNLVTTLSRLAKGNRLVLISLHQPRSDIFRLFDLVLLM 287          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: ABCG5_RAT (ATP-binding cassette sub-family G member 5 OS=Rattus norvegicus GN=Abcg5 PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 4.995e-26
Identity = 65/202 (32.18%), Postives = 118/202 (58.42%), Query Frame = 1
Query:   70 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRL-SSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 669
            ++L  VS     G    ++G SG+GKTTL+D ++GR +  G +EG++ ++G   +++ F     Y  Q+D+    +T+ E+L Y+A L L SS  D   +K  V+ V+  + L  + D ++G     G+S+ +R+R++IA +L+ +P ++ +DEPT+GLD   A  ++  +       R V+ TIHQP  ++F  FD++ ++
Sbjct:   68 KILKDVSLYIESGQTMCILGSSGSGKTTLLDAISGRLRRTGTLEGEVFVNGCELRRDQFQDCVSYLLQSDVFLSSLTVRETLRYTAMLALRSSSADFYDKK--VEAVLTELSLSHVADQMIGNYNFGGISSGERRRVSIAAQLLQDPKVMMLDEPTTGLDCMTANHIVLLLVELARRNRIVIVTIHQPRSELFHHFDKIAIL 267          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: PDR1_SCHPO (ATP-binding cassette transporter pdr1 OS=Schizosaccharomyces pombe GN=pdr1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.523e-25
Identity = 68/201 (33.83%), Postives = 119/201 (59.20%), Query Frame = 1
Query:   70 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 669
            Q+L +VSG  +   LTAL+G + +GK+ L+ +L+ R   G +EG+I +SG    +    R+ GY  +  +     T+ E+L   A LR S      ++  +V+ V++ + L  + D +VG  G  GLS   ++ L+IAVEL A P SI+ +DEP +GLD+++A +++  ++    +G +++C++ QPS  I E FD +L++
Sbjct:  775 QILTNVSGYLKKNTLTALLGENKSGKSVLLRILSQRGIAGSVEGEITLSGLKNPKNLRKRI-GYVRKNPLFISEYTVRETLRLHAALRQSKQRSLSEQYAYVEYVIDFLGLGEVADFIVGDMG-KGLSLYHKRLLSIAVELSARPGSILLLDEPANGLDSQSAWMLVCILQKLARSGLSILCSVSQPSSRILELFDMMLIL 973          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: ABCG5_HUMAN (ATP-binding cassette sub-family G member 5 OS=Homo sapiens GN=ABCG5 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.230e-24
Identity = 66/201 (32.84%), Postives = 113/201 (56.22%), Query Frame = 1
Query:   70 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 669
            Q+L  VS     G +  ++G SG+GKTTL+D ++GR    G   G++ ++G   ++E F     Y  Q+D     +T+ E+L Y+A L +        +K  V+ VM  + L  + D L+G   + G+ST +R+R++IA +L+ +P ++  DEPT+GLD   A  ++  +       R VV TIHQP  ++F+ FD++ ++
Sbjct:   67 QILKDVSLYVESGQIMCILGSSGSGKTTLLDAMSGRLGRAGTFLGEVYVNGRALRREQFQDCFSYVLQSDTLLSSLTVRETLHYTALLAIRRGNPGSFQKK-VEAVMAELSLSHVADRLIGNYSLGGISTGERRRVSIAAQLLQDPKVMLFDEPTTGLDCMTANQIVVLLVELARRNRIVVLTIHQPRSELFQLFDKIAIL 266          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: BROWN_DROVI (Protein brown OS=Drosophila virilis GN=bw PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21
Identity = 64/197 (32.49%), Postives = 110/197 (55.84%), Query Frame = 1
Query:    4 QMNYYVDMPAEMKTEGVGEDRLQ----LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 582
            Q+NYYV    +       E R Q    +LH VSG  + G L A++G SGAGKTTL+  ++ R  G  + GD+ ++G   +++   R+S +  + +I+    T Y+ L + +  ++       +++  V +++  V L   RDA      +  LS  +RKRL++A EL+ +P  +F DEPT+GLD+ +A  V++T+R+
Sbjct:   18 QLNYYVPAQEQSNYSFWNECRKQRELGILHDVSGHLKTGDLIAILGGSGAGKTTLLAAISQRLRGN-LTGDVVLNGMAMERDQMTRISSFLREFEINVKTFTAYDDLYFMSHFKMHRRTTKSEKRQAVSDLLLAVGL---RDA--AHTRIQQLSGGERKRLSLAEELITDPIFLFCDEPTTGLDSFSAYTVIKTLRH 208          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: AB8G_ARATH (ABC transporter G family member 8 OS=Arabidopsis thaliana GN=ABCG8 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21
Identity = 63/200 (31.50%), Postives = 109/200 (54.50%), Query Frame = 1
Query:   73 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLM 669
            +L +++    P  + A++G SGAGK+TL+D+LA + +     G I ++  P    ++ ++S Y  Q D   P +T+ E+  ++A L L +     +    +   + L  L   R A        GLS  +R+R++I + L+ +P  + +DEPTSGLD+++A  V+  +++  V   RTV+ +IHQPS  I    D LLL+
Sbjct:   44 ILRNITLTAHPTEILAVVGPSGAGKSTLLDILASKTSP--TSGSILLNSIPINPSSYRKISSYVPQHDSFFPLLTVSETFSFAACLLLPNPSIVSETVTSLLSELNLTHLSHTRLA-------QGLSGGERRRVSIGLSLLHDPCFLLLDEPTSGLDSKSAFDVIHILKSIAVSRQRTVILSIHQPSFKILSIIDRLLLL 234          
The following BLAST results are available for this feature:
BLAST of FC931060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
AB9G_ARATH1.553e-2736.17ABC transporter G family member 9 OS=Arabidopsis t... [more]
YO075_YEAST2.028e-2735.16Uncharacterized ABC transporter ATP-binding protei... [more]
ABCG5_MOUSE2.649e-2732.84ATP-binding cassette sub-family G member 5 OS=Mus ... [more]
ABCG3_MOUSE3.459e-2736.32ATP-binding cassette sub-family G member 3 OS=Mus ... [more]
ABCG8_MOUSE7.707e-2734.67ATP-binding cassette sub-family G member 8 OS=Mus ... [more]
ABCG5_RAT4.995e-2632.18ATP-binding cassette sub-family G member 5 OS=Ratt... [more]
PDR1_SCHPO5.523e-2533.83ATP-binding cassette transporter pdr1 OS=Schizosac... [more]
ABCG5_HUMAN1.230e-2432.84ATP-binding cassette sub-family G member 5 OS=Homo... [more]
BROWN_DROVI1.273e-2132.49Protein brown OS=Drosophila virilis GN=bw PE=2 SV=... [more]
AB8G_ARATH4.838e-2131.50ABC transporter G family member 8 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC34101A02EF PostHarvP1 Citrus clementina cDNA clone C34101A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931060 ID=FC931060; Name=FC931060; organism=Citrus clementina; type=EST; length=669bp
GACCAGATGAATTACTACGTCGATATGCCAGCAGAAATGAAAACTGAAGG
AGTTGGAGAAGATCGTCTTCAACTGTTACACAGTGTCAGTGGTGCATTCA
GACCAGGAGTACTGACAGCATTAATGGGTGTAAGTGGTGCAGGGAAGACA
ACTCTAATGGATGTATTGGCAGGAAGGAAGACCGGAGGATACATCGAAGG
AGACATTAAGATTTCTGGTTACCCCAAAAAACAAGAAACGTTTGCTCGTG
TCAGTGGTTATTGTGAACAGACTGACATTCATTCTCCTCATGTTACTCTC
TATGAATCTCTTCTCTACTCAGCATGGCTTCGTCTTTCTTCAGACGTCGA
TACAAAAAAACGAAAGATATTCGTTGATGAAGTTATGGAGTTGGTTGAGC
TTAAACCATTGAGGGATGCTTTGGTTGGCCTTCCAGGAGTAAATGGTCTT
TCAACAGAGCAAAGGAAGAGATTGACAATTGCTGTAGAATTGGTTGCTAA
CCCTTCAATCATCTTCATGGACGAGCCAACATCTGGCCTTGATGCTAGAG
CAGCTGCTATTGTCATGCGTACGGTTAGAAATACAGTGGATACAGGGAGA
ACGGTTGTGTGCACAATTCATCAGCCAAGCATAGACATTTTTGAAGCATT
TGATGAGCTTTTGTTAATG
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