FC931060

Overview
NameFC931060
Unique NameFC931060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: AB4G_ARATH (ABC transporter G family member 4 OS=Arabidopsis thaliana GN=ABCG4 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.253e-21
Identity = 62/200 (31.00%), Postives = 112/200 (56.00%), Query Frame = 1
Query:   73 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLM 669
            +L +++    P  + A++G SGAGK+TL+D+LA R +     G I ++       ++ ++S Y  Q D   P +T+ E+  +SA L L  ++   K    V  +++ + L  L    +G     GLS  +R+R++I + L+ +P ++ +DEPTSGLD+++A  V++ +++      R V+ +IHQPS  I    D +LL+
Sbjct:   30 ILRNITLTSHPSQILAIIGPSGAGKSTLLDILAARTSP--TSGSILLNSVLINPSSYRKISSYVPQHDTFFPLLTVSETFTFSASLLLPKNLS--KVSSVVASLLKELNLTHLAHTRLG----QGLSGGERRRVSIGLSLLHDPEVLLLDEPTSGLDSKSAFDVVQILKSIATSRERIVILSIHQPSFKILSLIDRVLLL 221          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: BROWN_DROME (Protein brown OS=Drosophila melanogaster GN=bw PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.839e-20
Identity = 66/211 (31.28%), Postives = 112/211 (53.08%), Query Frame = 1
Query:    4 QMNYYVDMPAEMKTEGVGEDR----LQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 624
            Q+NYYV    +       E R    L++L   SG  + G L A++G SGAGKTTL+  ++ R  G  + GD+ ++G   ++    R+S +  Q +I+    T YE L + +  ++       +++     V +L+    LRDA      +  LS  +RKRL++A EL+ +P  +F DEPT+GLD+ +A  V++T+R+     R    +++Q
Sbjct:   21 QLNYYVPDQEQSNYSFWNECRKKRELRILQDASGHMKTGDLIAILGGSGAGKTTLLAAISQRLRGN-LTGDVVLNGMAMERHQMTRISSFLPQFEINVKTFTAYEHLYFMSHFKMHRRTTKAEKR---QRVADLLLAVGLRDA--AHTRIQQLSGGERKRLSLAEELITDPIFLFCDEPTTGLDSFSAYSVIKTLRHLCTRRRIAKHSLNQ 225          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: AB23G_ARATH (ABC transporter G family member 23 OS=Arabidopsis thaliana GN=ABCG23 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.839e-20
Identity = 69/209 (33.01%), Postives = 120/209 (57.42%), Query Frame = 1
Query:   73 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-------KTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVN--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLM 669
            +L+SVS A     + A++G SG GK+TL+ +++GR        +   +  + KI+ Y + +    R+ G+  Q D   P +T+ E+L+YSA   L  D   K+R+  V+ ++  + L  ++D+ VG       G+S  +RKR++IAVE++ +P I+ +DEPTSGLD+R +  V+  +     +  RTV+ +IHQPS  I +   + L++
Sbjct:   66 ILNSVSLAAESSKILAVVGPSGTGKSTLLKIISGRVNHKALDPSSAVLMNNRKITDYNQLR----RLCGFVPQDDDLLPLLTVKETLMYSAKFSLR-DSTAKEREERVESLLSDLGLVLVQDSFVGEGDEEDRGVSGGERKRVSIAVEMIRDPPILLLDEPTSGLDSRNSLQVVELLATMAKSKQRTVLFSIHQPSYRILDYISDYLIL 269          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: AB3G_ARATH (ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.915e-19
Identity = 68/218 (31.19%), Postives = 119/218 (54.59%), Query Frame = 1
Query:   22 DMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 669
            D+   MK +    D++  + S +G   PG +T +MG + +GK+TL+  LAGR      + G++ ++G   K        G+ E+       +T+ E L YSA L+L   +  K+    V++ ++ + L    + L+G    + GL + +R+R++IA ELV  P I+F+DEP   LD+ +A ++M T++     G T+V TI+Q S ++F  FD + L+
Sbjct:  118 DLTVTMKGKRKYSDKV--VKSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSAKMYGEVFVNG--SKSHMPYGSYGFVERETQLIGSLTVREFLYYSALLQLPGFLFQKRS--VVEDAIQAMSLSDYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKKLASMGCTLVFTIYQSSTEVFGLFDRICLL 329          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: ABCA2_HUMAN (ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14
Identity = 56/178 (31.46%), Postives = 87/178 (48.88%), Query Frame = 1
Query:  100 RPGVLTALMGVSGAGKTTLMDVLAGRK--TGG--YIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            RPG    L+GV+GAGKT+   +L G +  TGG  ++ G   +    + Q++     GYC Q D     +T  E L     LR    +  K     V   +E +EL    D   G       S   +++L+ A+ L+  P+ IF+DEPT+G+D +A   +   + + + TGR+VV T H
Sbjct: 2078 RPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKELLQVQQSL----GYCPQCDALFDELTAREHLQLYTRLR---GISWKDEARVVKWALEKLELTKYADKPAGT-----YSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSH 2243          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: ABCA2_RAT (ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus GN=Abca2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 56/178 (31.46%), Postives = 87/178 (48.88%), Query Frame = 1
Query:  100 RPGVLTALMGVSGAGKTTLMDVLAGRK--TGG--YIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            RPG    L+GV+GAGKT+   +L G +  TGG  ++ G   +    + Q++     GYC Q D     +T  E L     LR    +  K     V   +E +EL    D   G       S   +++L+ A+ L+  P+ IF+DEPT+G+D +A   +   + + + TGR+VV T H
Sbjct: 2079 RPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKDLLQVQQSL----GYCPQFDALFDELTAREHLQLYTRLR---GIPWKDEAQVVRWALEKLELTKCADKPAG-----SYSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSH 2244          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: ABCA2_MOUSE (ATP-binding cassette sub-family A member 2 OS=Mus musculus GN=Abca2 PE=1 SV=4)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 56/178 (31.46%), Postives = 87/178 (48.88%), Query Frame = 1
Query:  100 RPGVLTALMGVSGAGKTTLMDVLAGRK--TGG--YIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            RPG    L+GV+GAGKT+   +L G +  TGG  ++ G   +    + Q++     GYC Q D     +T  E L     LR    +  K     V   +E +EL    D   G       S   +++L+ A+ L+  P+ IF+DEPT+G+D +A   +   + + + TGR+VV T H
Sbjct: 2079 RPGECFGLLGVNGAGKTSTFKMLTGDESTTGGEAFVNGHSVLKDLLQVQQSL----GYCPQFDALFDELTAREHLQLYTRLR---GIPWKDEAQVVKWALEKLELTKYADKPAGT-----YSGGNKRKLSTAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDLIKTGRSVVLTSH 2244          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: NODI_BURTA (Nod factor export ATP-binding protein I OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=nodI PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.729e-14
Identity = 59/191 (30.89%), Postives = 100/191 (52.36%), Query Frame = 1
Query:   58 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG--YPKKQETFARVSGYCEQTDIHSPHVTLYESLL-YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            +D+L ++  +S   +PG    L+G +GAGKTT + +L G        G I + G   P +     R  G   Q D   P  T+ E+LL ++ +  L++     + +  V  ++E  +L+   DA VG      LS   ++RLT+A  LV NP ++ +DEPT+GLD +A  ++   +R+ +  G+T++ T H
Sbjct:   16 DDKL-VVDGLSFHVQPGECFGLLGPNGAGKTTALKMLLGITHPD--AGSISLCGEPVPSRARHARRRVGVVPQFDNLDPDFTVRENLLVFARYFGLAAH----EARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNNPDVLVLDEPTTGLDPQARHLMWERLRSLLVRGKTILLTTH 194          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: NODI_RALME (Nod factor export ATP-binding protein I OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=nodI PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 56/177 (31.64%), Postives = 93/177 (52.54%), Query Frame = 1
Query:  100 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQET-FARVS-GYCEQTDIHSPHVTLYESL-LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            +PG    L+G +GAGKTT + +L G  T     G + + G P  Q    AR+  G   Q D   P  ++ E+L ++  +  LSS    ++    V +++E   L+   DA V       LS   R+RLT+A  L+ +P ++ MDEPT+GLD +A  ++   +++ +  G+T++ T H
Sbjct:   28 QPGQCFGLLGPNGAGKTTTLRMLLGLTTPA--SGTLMLCGEPIPQRAPQARMRVGVVPQFDNLDPDFSVIENLRIFGRYFGLSSAQIAER----VPKLLEFARLESRADAQV-----RDLSGGMRRRLTVARALINDPDLLIMDEPTTGLDPQARHLIWERLKSLLSAGKTILLTTH 193          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: LPTB_SHIFL (Lipopolysaccharide export system ATP-binding protein lptB OS=Shigella flexneri GN=lptB PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 57/187 (30.48%), Postives = 95/187 (50.80%), Query Frame = 1
Query:   70 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            +++  VS     G +  L+G +GAGKTT   ++ G   R  G  I  D  IS  P       R  GY  Q       +++Y++L+  A L++  D+  ++R+   +E+ME   ++ LRD++        LS  +R+R+ IA  L ANP  I +DEP +G+D  +   + R + +  D+G  V+ T H
Sbjct:   17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDDDISLLPLHARA-RRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDH 195          
The following BLAST results are available for this feature:
BLAST of FC931060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
AB4G_ARATH8.253e-2131.00ABC transporter G family member 4 OS=Arabidopsis t... [more]
BROWN_DROME1.839e-2031.28Protein brown OS=Drosophila melanogaster GN=bw PE=... [more]
AB23G_ARATH1.839e-2033.01ABC transporter G family member 23 OS=Arabidopsis ... [more]
AB3G_ARATH5.915e-1931.19ABC transporter G family member 3 OS=Arabidopsis t... [more]
ABCA2_HUMAN3.358e-1431.46ATP-binding cassette sub-family A member 2 OS=Homo... [more]
ABCA2_RAT4.386e-1431.46ATP-binding cassette sub-family A member 2 OS=Ratt... [more]
ABCA2_MOUSE4.386e-1431.46ATP-binding cassette sub-family A member 2 OS=Mus ... [more]
NODI_BURTA5.729e-1430.89Nod factor export ATP-binding protein I OS=Burkhol... [more]
NODI_RALME7.482e-1431.64Nod factor export ATP-binding protein I OS=Ralston... [more]
LPTB_SHIFL1.276e-1330.48Lipopolysaccharide export system ATP-binding prote... [more]

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Properties
Property NameValue
Genbank descriptionC34101A02EF PostHarvP1 Citrus clementina cDNA clone C34101A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931060 ID=FC931060; Name=FC931060; organism=Citrus clementina; type=EST; length=669bp
GACCAGATGAATTACTACGTCGATATGCCAGCAGAAATGAAAACTGAAGG
AGTTGGAGAAGATCGTCTTCAACTGTTACACAGTGTCAGTGGTGCATTCA
GACCAGGAGTACTGACAGCATTAATGGGTGTAAGTGGTGCAGGGAAGACA
ACTCTAATGGATGTATTGGCAGGAAGGAAGACCGGAGGATACATCGAAGG
AGACATTAAGATTTCTGGTTACCCCAAAAAACAAGAAACGTTTGCTCGTG
TCAGTGGTTATTGTGAACAGACTGACATTCATTCTCCTCATGTTACTCTC
TATGAATCTCTTCTCTACTCAGCATGGCTTCGTCTTTCTTCAGACGTCGA
TACAAAAAAACGAAAGATATTCGTTGATGAAGTTATGGAGTTGGTTGAGC
TTAAACCATTGAGGGATGCTTTGGTTGGCCTTCCAGGAGTAAATGGTCTT
TCAACAGAGCAAAGGAAGAGATTGACAATTGCTGTAGAATTGGTTGCTAA
CCCTTCAATCATCTTCATGGACGAGCCAACATCTGGCCTTGATGCTAGAG
CAGCTGCTATTGTCATGCGTACGGTTAGAAATACAGTGGATACAGGGAGA
ACGGTTGTGTGCACAATTCATCAGCCAAGCATAGACATTTTTGAAGCATT
TGATGAGCTTTTGTTAATG
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