FC931060
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: LPTB_ECOLI (Lipopolysaccharide export system ATP-binding protein lptB OS=Escherichia coli (strain K12) GN=lptB PE=1 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13 Identity = 57/187 (30.48%), Postives = 95/187 (50.80%), Query Frame = 1 Query: 70 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621 +++ VS G + L+G +GAGKTT ++ G R G I D IS P R GY Q +++Y++L+ A L++ D+ ++R+ +E+ME ++ LRD++ LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G V+ T H Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDDDISLLPLHARA-RRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDH 195
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: LPTB_ECOL6 (Lipopolysaccharide export system ATP-binding protein lptB OS=Escherichia coli O6 GN=lptB PE=3 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13 Identity = 57/187 (30.48%), Postives = 95/187 (50.80%), Query Frame = 1 Query: 70 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621 +++ VS G + L+G +GAGKTT ++ G R G I D IS P R GY Q +++Y++L+ A L++ D+ ++R+ +E+ME ++ LRD++ LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G V+ T H Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDDDISLLPLHARA-RRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDH 195
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: LPTB_ECO57 (Lipopolysaccharide export system ATP-binding protein lptB OS=Escherichia coli O157:H7 GN=lptB PE=3 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13 Identity = 57/187 (30.48%), Postives = 95/187 (50.80%), Query Frame = 1 Query: 70 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621 +++ VS G + L+G +GAGKTT ++ G R G I D IS P R GY Q +++Y++L+ A L++ D+ ++R+ +E+ME ++ LRD++ LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G V+ T H Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDDDISLLPLHARA-RRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDH 195
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: ABCA3_MOUSE (ATP-binding cassette sub-family A member 3 OS=Mus musculus GN=Abca3 PE=2 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 1.667e-13 Identity = 53/181 (29.28%), Postives = 89/181 (49.17%), Query Frame = 1 Query: 85 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQET--FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621 +S A + G L+G +GAGKTT +L G +T GD + GY + + GYC Q D H+T E L+ A LR + + V+ + + L+P + LV S +++L+ + L+ P++IF+DEP++G+D A ++ TV ++G+ +V T H Sbjct: 1402 ISLAVQKGECFGLLGFNGAGKTTTFKMLTGEET--ITSGDAFVGGYSISSDIGKVRQRMGYCPQFDALLDHMTGREMLVMYARLR---GIPERLINACVENTLRGLLLEPHANKLV-----KTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIVITSH 1572
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: NODI_RHIEC (Nod factor export ATP-binding protein I OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=nodI PE=3 SV=3) HSP 1 Score: 75.8702 bits (185), Expect = 2.177e-13 Identity = 56/186 (30.11%), Postives = 96/186 (51.61%), Query Frame = 1 Query: 73 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-KKQETFARVS-GYCEQTDIHSPHVTLYESLL-YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621 ++ ++S PG L+G +GAGK+T+ ++ G G I + G P Q AR G Q D P T+ E+LL YS + ++ T+K + + ++E L+ +A V + LS ++RLT+A L+ +P ++ MDEPT+GLD A ++ +R+ + G+T++ T H Sbjct: 32 VVSALSFRVSPGECFGLLGPNGAGKSTIARMILGMTAPD--AGKITVLGVPVPAQARLARKGIGVVPQFDNLEPEFTVRENLLVYSRYFGMN----TRKVEAVMSSLLEFARLESKVNARV-----SELSGGMKRRLTLARALINDPQLLVMDEPTTGLDPHARHLIWERLRSLLTRGKTIILTTH 206
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: NODI1_RHIME (Nod factor export ATP-binding protein I OS=Rhizobium meliloti GN=nodI PE=3 SV=3) HSP 1 Score: 75.8702 bits (185), Expect = 2.177e-13 Identity = 54/186 (29.03%), Postives = 98/186 (52.69%), Query Frame = 1 Query: 73 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-KKQETFARVS-GYCEQTDIHSPHVTLYESLL-YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621 +++ +S G L+G +GAGK+T+ ++ G T G G+I + G P + AR+ G Q D T+ E+LL + + R+S T++ + + ++E L+ DA V + LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T++ T H Sbjct: 51 VINGLSFTVAAGECFGLLGPNGAGKSTITRMILGMTTPG--TGEITVLGVPVPSRARLARMRIGVVPQFDNLDLEFTVRENLLVFGRYFRMS----TREIEAVIPSLLEFARLENKADARV-----SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 225
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: ABCA9_HUMAN (ATP-binding cassette sub-family A member 9 OS=Homo sapiens GN=ABCA9 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.177e-13 Identity = 49/174 (28.16%), Postives = 95/174 (54.60%), Query Frame = 1 Query: 37 MKTEGVGE-DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 543 +K E G+ +R++ L V G +TAL+G SGAGKTTL+++L+G G + + + + E ++ +G+C Q+++ +T+ E+L A ++ + +K V V++ +E++ ++D L LS Q ++LT + ++ +P ++ +DEPT+GLD Sbjct: 486 LKKEYAGKCERVEALKGVVFDIYEGQITALLGHSGAGKTTLLNILSGLSVP--TSGSVTVYNHTLSRMADIENISKFTGFCPQSNVQFGFLTVKENLRLFAKIKGILPHEVEKE---VQRVVQELEMENIQDIL-----AQNLSGGQNRKLTFGIAILGDPQVLLLDEPTAGLD 649
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: NODI_BURXL (Nod factor export ATP-binding protein I OS=Burkholderia xenovorans (strain LB400) GN=nodI PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.843e-13 Identity = 57/177 (32.20%), Postives = 93/177 (52.54%), Query Frame = 1 Query: 103 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KKQETFARVSGYCEQTDIHSPHVTLYESLL-YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621 PG L+G +GAGKTT + +L G G I++ G P + + ARV G Q D P T+ E+LL + + +S+ + + V ++E L+ DA V + LS ++RLT+A LV +P ++ MDEPT+GLD +A ++ +R+ + G+T++ T H Sbjct: 30 PGECFGLLGPNGAGKTTTLRMLLGIAAPD--AGTIRLCGEPIPRRARVARARV-GVVPQFDNLDPDFTVRENLLVFGRYFGMSA----AQCRAMVPPLLEFARLESKADARV-----SELSGGMKRRLTLARALVNDPDVLIMDEPTTGLDPQARHLIWERLRSLLARGKTILLTTH 194
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: NODI_BURPS (Nod factor export ATP-binding protein I OS=Burkholderia pseudomallei GN=nodI PE=3 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13 Identity = 59/192 (30.73%), Postives = 101/192 (52.60%), Query Frame = 1 Query: 58 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KKQETFARVSGYCEQTDIHSPHVTLYESLL-YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621 +D+L ++ +S +PG L+G +GAGKTT + +L G G I + G P + + RV G Q D P T+ E+LL ++ + L++ + V ++E +L+ DA VG LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ + G+T++ T H Sbjct: 16 DDKL-VVDGLSFHVQPGECFGLLGPNGAGKTTTLKMLLGITHPD--AGSISLCGEPVPSRARHARQRV-GVVPQFDNLDPDFTVRENLLVFARYFGLTAHA----ARALVPPLLEFAKLESKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 194
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: NODI_BURP1 (Nod factor export ATP-binding protein I OS=Burkholderia pseudomallei (strain 1710b) GN=nodI PE=3 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13 Identity = 59/192 (30.73%), Postives = 101/192 (52.60%), Query Frame = 1 Query: 58 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KKQETFARVSGYCEQTDIHSPHVTLYESLL-YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621 +D+L ++ +S +PG L+G +GAGKTT + +L G G I + G P + + RV G Q D P T+ E+LL ++ + L++ + V ++E +L+ DA VG LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ + G+T++ T H Sbjct: 16 DDKL-VVDGLSFHVQPGECFGLLGPNGAGKTTTLKMLLGITHPD--AGSISLCGEPVPSRARHARQRV-GVVPQFDNLDPDFTVRENLLVFARYFGLTAHA----ARALVPPLLEFAKLESKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 194 The following BLAST results are available for this feature:
BLAST of FC931060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 208
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931060 ID=FC931060; Name=FC931060; organism=Citrus clementina; type=EST; length=669bpback to top |