FC931060

Overview
NameFC931060
Unique NameFC931060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: LPTB_ECOLI (Lipopolysaccharide export system ATP-binding protein lptB OS=Escherichia coli (strain K12) GN=lptB PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 57/187 (30.48%), Postives = 95/187 (50.80%), Query Frame = 1
Query:   70 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            +++  VS     G +  L+G +GAGKTT   ++ G   R  G  I  D  IS  P       R  GY  Q       +++Y++L+  A L++  D+  ++R+   +E+ME   ++ LRD++        LS  +R+R+ IA  L ANP  I +DEP +G+D  +   + R + +  D+G  V+ T H
Sbjct:   17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDDDISLLPLHARA-RRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDH 195          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: LPTB_ECOL6 (Lipopolysaccharide export system ATP-binding protein lptB OS=Escherichia coli O6 GN=lptB PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 57/187 (30.48%), Postives = 95/187 (50.80%), Query Frame = 1
Query:   70 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            +++  VS     G +  L+G +GAGKTT   ++ G   R  G  I  D  IS  P       R  GY  Q       +++Y++L+  A L++  D+  ++R+   +E+ME   ++ LRD++        LS  +R+R+ IA  L ANP  I +DEP +G+D  +   + R + +  D+G  V+ T H
Sbjct:   17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDDDISLLPLHARA-RRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDH 195          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: LPTB_ECO57 (Lipopolysaccharide export system ATP-binding protein lptB OS=Escherichia coli O157:H7 GN=lptB PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 57/187 (30.48%), Postives = 95/187 (50.80%), Query Frame = 1
Query:   70 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            +++  VS     G +  L+G +GAGKTT   ++ G   R  G  I  D  IS  P       R  GY  Q       +++Y++L+  A L++  D+  ++R+   +E+ME   ++ LRD++        LS  +R+R+ IA  L ANP  I +DEP +G+D  +   + R + +  D+G  V+ T H
Sbjct:   17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDDDISLLPLHARA-RRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDH 195          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: ABCA3_MOUSE (ATP-binding cassette sub-family A member 3 OS=Mus musculus GN=Abca3 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.667e-13
Identity = 53/181 (29.28%), Postives = 89/181 (49.17%), Query Frame = 1
Query:   85 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQET--FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            +S A + G    L+G +GAGKTT   +L G +T     GD  + GY    +     +  GYC Q D    H+T  E L+  A LR    +  +     V+  +  + L+P  + LV        S   +++L+  + L+  P++IF+DEP++G+D  A  ++  TV    ++G+ +V T H
Sbjct: 1402 ISLAVQKGECFGLLGFNGAGKTTTFKMLTGEET--ITSGDAFVGGYSISSDIGKVRQRMGYCPQFDALLDHMTGREMLVMYARLR---GIPERLINACVENTLRGLLLEPHANKLV-----KTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIVITSH 1572          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: NODI_RHIEC (Nod factor export ATP-binding protein I OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=nodI PE=3 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.177e-13
Identity = 56/186 (30.11%), Postives = 96/186 (51.61%), Query Frame = 1
Query:   73 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-KKQETFARVS-GYCEQTDIHSPHVTLYESLL-YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            ++ ++S    PG    L+G +GAGK+T+  ++ G        G I + G P   Q   AR   G   Q D   P  T+ E+LL YS +  ++    T+K +  +  ++E   L+   +A V     + LS   ++RLT+A  L+ +P ++ MDEPT+GLD  A  ++   +R+ +  G+T++ T H
Sbjct:   32 VVSALSFRVSPGECFGLLGPNGAGKSTIARMILGMTAPD--AGKITVLGVPVPAQARLARKGIGVVPQFDNLEPEFTVRENLLVYSRYFGMN----TRKVEAVMSSLLEFARLESKVNARV-----SELSGGMKRRLTLARALINDPQLLVMDEPTTGLDPHARHLIWERLRSLLTRGKTIILTTH 206          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: NODI1_RHIME (Nod factor export ATP-binding protein I OS=Rhizobium meliloti GN=nodI PE=3 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.177e-13
Identity = 54/186 (29.03%), Postives = 98/186 (52.69%), Query Frame = 1
Query:   73 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-KKQETFARVS-GYCEQTDIHSPHVTLYESLL-YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            +++ +S     G    L+G +GAGK+T+  ++ G  T G   G+I + G P   +   AR+  G   Q D      T+ E+LL +  + R+S    T++ +  +  ++E   L+   DA V     + LS   ++RLT+A  L+ +P ++ +DEPT+GLD  A  ++   +R+ +  G+T++ T H
Sbjct:   51 VINGLSFTVAAGECFGLLGPNGAGKSTITRMILGMTTPG--TGEITVLGVPVPSRARLARMRIGVVPQFDNLDLEFTVRENLLVFGRYFRMS----TREIEAVIPSLLEFARLENKADARV-----SDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 225          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: ABCA9_HUMAN (ATP-binding cassette sub-family A member 9 OS=Homo sapiens GN=ABCA9 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.177e-13
Identity = 49/174 (28.16%), Postives = 95/174 (54.60%), Query Frame = 1
Query:   37 MKTEGVGE-DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 543
            +K E  G+ +R++ L  V      G +TAL+G SGAGKTTL+++L+G        G + +  +   +    E  ++ +G+C Q+++    +T+ E+L   A ++     + +K    V  V++ +E++ ++D L        LS  Q ++LT  + ++ +P ++ +DEPT+GLD
Sbjct:  486 LKKEYAGKCERVEALKGVVFDIYEGQITALLGHSGAGKTTLLNILSGLSVP--TSGSVTVYNHTLSRMADIENISKFTGFCPQSNVQFGFLTVKENLRLFAKIKGILPHEVEKE---VQRVVQELEMENIQDIL-----AQNLSGGQNRKLTFGIAILGDPQVLLLDEPTAGLD 649          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: NODI_BURXL (Nod factor export ATP-binding protein I OS=Burkholderia xenovorans (strain LB400) GN=nodI PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.843e-13
Identity = 57/177 (32.20%), Postives = 93/177 (52.54%), Query Frame = 1
Query:  103 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KKQETFARVSGYCEQTDIHSPHVTLYESLL-YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            PG    L+G +GAGKTT + +L G        G I++ G P   + +   ARV G   Q D   P  T+ E+LL +  +  +S+     + +  V  ++E   L+   DA V     + LS   ++RLT+A  LV +P ++ MDEPT+GLD +A  ++   +R+ +  G+T++ T H
Sbjct:   30 PGECFGLLGPNGAGKTTTLRMLLGIAAPD--AGTIRLCGEPIPRRARVARARV-GVVPQFDNLDPDFTVRENLLVFGRYFGMSA----AQCRAMVPPLLEFARLESKADARV-----SELSGGMKRRLTLARALVNDPDVLIMDEPTTGLDPQARHLIWERLRSLLARGKTILLTTH 194          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: NODI_BURPS (Nod factor export ATP-binding protein I OS=Burkholderia pseudomallei GN=nodI PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13
Identity = 59/192 (30.73%), Postives = 101/192 (52.60%), Query Frame = 1
Query:   58 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KKQETFARVSGYCEQTDIHSPHVTLYESLL-YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            +D+L ++  +S   +PG    L+G +GAGKTT + +L G        G I + G P   + +    RV G   Q D   P  T+ E+LL ++ +  L++       +  V  ++E  +L+   DA VG      LS   ++RLT+A  LV +P ++ +DEPT+GLD +A  ++   +R+ +  G+T++ T H
Sbjct:   16 DDKL-VVDGLSFHVQPGECFGLLGPNGAGKTTTLKMLLGITHPD--AGSISLCGEPVPSRARHARQRV-GVVPQFDNLDPDFTVRENLLVFARYFGLTAHA----ARALVPPLLEFAKLESKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 194          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: NODI_BURP1 (Nod factor export ATP-binding protein I OS=Burkholderia pseudomallei (strain 1710b) GN=nodI PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13
Identity = 59/192 (30.73%), Postives = 101/192 (52.60%), Query Frame = 1
Query:   58 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KKQETFARVSGYCEQTDIHSPHVTLYESLL-YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            +D+L ++  +S   +PG    L+G +GAGKTT + +L G        G I + G P   + +    RV G   Q D   P  T+ E+LL ++ +  L++       +  V  ++E  +L+   DA VG      LS   ++RLT+A  LV +P ++ +DEPT+GLD +A  ++   +R+ +  G+T++ T H
Sbjct:   16 DDKL-VVDGLSFHVQPGECFGLLGPNGAGKTTTLKMLLGITHPD--AGSISLCGEPVPSRARHARQRV-GVVPQFDNLDPDFTVRENLLVFARYFGLTAHA----ARALVPPLLEFAKLESKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 194          
The following BLAST results are available for this feature:
BLAST of FC931060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
LPTB_ECOLI1.276e-1330.48Lipopolysaccharide export system ATP-binding prote... [more]
LPTB_ECOL61.276e-1330.48Lipopolysaccharide export system ATP-binding prote... [more]
LPTB_ECO571.276e-1330.48Lipopolysaccharide export system ATP-binding prote... [more]
ABCA3_MOUSE1.667e-1329.28ATP-binding cassette sub-family A member 3 OS=Mus ... [more]
NODI_RHIEC2.177e-1330.11Nod factor export ATP-binding protein I OS=Rhizobi... [more]
NODI1_RHIME2.177e-1329.03Nod factor export ATP-binding protein I OS=Rhizobi... [more]
ABCA9_HUMAN2.177e-1328.16ATP-binding cassette sub-family A member 9 OS=Homo... [more]
NODI_BURXL2.843e-1332.20Nod factor export ATP-binding protein I OS=Burkhol... [more]
NODI_BURPS3.713e-1330.73Nod factor export ATP-binding protein I OS=Burkhol... [more]
NODI_BURP13.713e-1330.73Nod factor export ATP-binding protein I OS=Burkhol... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34101A02EF PostHarvP1 Citrus clementina cDNA clone C34101A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931060 ID=FC931060; Name=FC931060; organism=Citrus clementina; type=EST; length=669bp
GACCAGATGAATTACTACGTCGATATGCCAGCAGAAATGAAAACTGAAGG
AGTTGGAGAAGATCGTCTTCAACTGTTACACAGTGTCAGTGGTGCATTCA
GACCAGGAGTACTGACAGCATTAATGGGTGTAAGTGGTGCAGGGAAGACA
ACTCTAATGGATGTATTGGCAGGAAGGAAGACCGGAGGATACATCGAAGG
AGACATTAAGATTTCTGGTTACCCCAAAAAACAAGAAACGTTTGCTCGTG
TCAGTGGTTATTGTGAACAGACTGACATTCATTCTCCTCATGTTACTCTC
TATGAATCTCTTCTCTACTCAGCATGGCTTCGTCTTTCTTCAGACGTCGA
TACAAAAAAACGAAAGATATTCGTTGATGAAGTTATGGAGTTGGTTGAGC
TTAAACCATTGAGGGATGCTTTGGTTGGCCTTCCAGGAGTAAATGGTCTT
TCAACAGAGCAAAGGAAGAGATTGACAATTGCTGTAGAATTGGTTGCTAA
CCCTTCAATCATCTTCATGGACGAGCCAACATCTGGCCTTGATGCTAGAG
CAGCTGCTATTGTCATGCGTACGGTTAGAAATACAGTGGATACAGGGAGA
ACGGTTGTGTGCACAATTCATCAGCCAAGCATAGACATTTTTGAAGCATT
TGATGAGCTTTTGTTAATG
back to top