FC931060

Overview
NameFC931060
Unique NameFC931060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:16..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: NODI_BURMA (Nod factor export ATP-binding protein I OS=Burkholderia mallei GN=nodI PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13
Identity = 59/192 (30.73%), Postives = 101/192 (52.60%), Query Frame = 1
Query:   58 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KKQETFARVSGYCEQTDIHSPHVTLYESLL-YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            +D+L ++  +S   +PG    L+G +GAGKTT + +L G        G I + G P   + +    RV G   Q D   P  T+ E+LL ++ +  L++       +  V  ++E  +L+   DA VG      LS   ++RLT+A  LV +P ++ +DEPT+GLD +A  ++   +R+ +  G+T++ T H
Sbjct:   16 DDKL-VVDGLSFHVQPGECFGLLGPNGAGKTTTLKMLLGITHPD--AGSISLCGEPVPSRARHARQRV-GVVPQFDNLDPDFTVRENLLVFARYFGLTAHA----ARALVPPLLEFAKLESKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 194          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: YBD4_ENCCU (ABC transporter-like protein ECU11_1340 OS=Encephalitozoon cuniculi GN=ECU11_1340 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.850e-13
Identity = 56/208 (26.92%), Postives = 100/208 (48.08%), Query Frame = 1
Query:   58 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVME-LVELKPLR-DALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV-CTIHQPSIDIFEAFDELLLM 669
            E   +L++ ++  F+ G + A MG SG+GKTT ++ +AG   +G    G I + G  +  + F     Y +Q       +T+ E + Y     L  +   + R+  +DEV+E L+ +  +R + +  + G         +  T  + L     ++ +DEPTS LDA  A  +   +R+      ++V  T+HQP  +++  FD LL M
Sbjct:   24 EKYARLINGLTADFKSGNVYAFMGTSGSGKTTTLETIAGLVPSGSRTGGRILVDGQERNPDEFPYEFAYGDQLGYIIDELTVEEFVYYYVVSSLPEESKERVRE-KMDEVLENLLNIGHIRHNKMKNISGGEQKRANLARTFTKMLLLEGELKVVLLDEPTSELDAGLALKLGEFLRDYARRSNSIVLVTVHQPGAELYNTFDNLLFM 230          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: NODI_BURCA (Nod factor export ATP-binding protein I OS=Burkholderia cenocepacia (strain AU 1054) GN=nodI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.334e-13
Identity = 57/187 (30.48%), Postives = 98/187 (52.41%), Query Frame = 1
Query:   73 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KKQETFARVSGYCEQTDIHSPHVTLYESLL-YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            +++ +S + + G    L+G +GAGKTT + +L G        G I + G P   + +    RV G   Q D   P  T+ E+LL +S +  +S+       +  V  ++E  +L+   DA VG      LS   ++RLT+A  LV +P ++ +DEPT+GLD +A  ++   +R+ +  G+T++ T H
Sbjct:   20 VVNGLSFSVKVGECYGLLGPNGAGKTTTLKMLLGLAHPD--AGTISLCGEPVPSRARHARQRV-GVVPQFDNLDPDFTVRENLLVFSRYFGMSAQA----ARALVAPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILITTH 194          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: ABCGK_DICDI (ABC transporter G family member 20 OS=Dictyostelium discoideum GN=abcG20 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.334e-13
Identity = 52/194 (26.80%), Postives = 101/194 (52.06%), Query Frame = 1
Query:   55 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSG----YCEQTDIHSPHVTLYESL-LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            G    +++ +++   + G +  L+G SG+GKTT++  + GR       G++ + G  K+      V G    +C Q       +TL  +L  +S   ++  D    K+    +E+++L++L  +    VGL     LS  Q+KR+++AV L+ +P ++ +DEPT G+D   A+ +   +R+  ++G T++ T H
Sbjct:   23 GYGNTKVIDNLNLQIKSGTINCLIGASGSGKTTILRTILGRLIPD--SGEVLVFG--KRPHDIGGVPGSICGFCPQEGALYYDLTLDHTLNFFSNVHQIPKDKFESKK----NEIIKLLDLPQINSRSVGL-----LSGGQKKRVSLAVALLHSPKLLILDEPTVGIDMEVASNIWSYLRSLANSGVTIIITTH 203          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: NODI_RHIS3 (Nod factor export ATP-binding protein I OS=Rhizobium sp. (strain N33) GN=nodI PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12
Identity = 62/204 (30.39%), Postives = 102/204 (50.00%), Query Frame = 1
Query:   19 VDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK-KQETFARVS-GYCEQTDIHSPHVTLYESLL-YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            +D+    K+ G   D+L +++ +S     G    L+G +GAGK+T+  +L G        G I + G P   +   AR S G   Q D      T+ E+LL +  +  +S    T+K K  +  ++E   L+   DA VG      LS   ++RLT+A  L+ +P ++ MDEPT+GLD  A  ++   +R  +  G+T++ T H
Sbjct:    6 IDLAGVKKSFG---DKL-VVNGLSFTVASGECFGLLGPNGAGKSTIARMLLGMTVPD--AGKITVLGEPVGARSRLARKSIGVVPQFDNLDQEFTVRENLLVFGRYFGMS----TRKIKEVIPSLLEFARLESKADARVG-----ELSGGMKRRLTLARALINDPQLLVMDEPTTGLDPHARHLIWERLRFLLARGKTIILTTH 194          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: YWJA_BACSU (Uncharacterized ABC transporter ATP-binding protein ywjA OS=Bacillus subtilis GN=ywjA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 56/191 (29.32%), Postives = 94/191 (49.21%), Query Frame = 1
Query:   58 EDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVSGYCE--QTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 624
            +D   +L+ ++ + + G   A +G SGAGK+TL  +L         EGDI I G   K  T + + G     Q D+     TL E++ Y        D+    ++  ++E++    +    D ++G  GV  LS  Q++RL+IA   + NPSI+ +DE TS LD    A + + ++  +  GRT +   H+
Sbjct:  343 DDHHNVLNDINLSIQAGETVAFVGPSGAGKSTLCSLLPRFYEAS--EGDITIDGISIKDMTLSSLRGQIGVVQQDVFLFSGTLRENIAYGRLGASEEDIWQAVKQAHLEELVH--NMPDGLDTMIGERGVK-LSGGQKQRLSIARMFLKNPSILILDEATSALDTETEAAIQKALQE-LSEGRTTLVIAHR 527          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: MACB_SYNFM (Macrolide export ATP-binding/permease protein macB OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=macB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 62/204 (30.39%), Postives = 97/204 (47.55%), Query Frame = 1
Query:   40 KTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGY--IEGDIKISGYPKKQETFA-RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSI 633
            KT  +GE  + +L  +S    PG   ALMG SG+GKTTLM++L    R T G+   +G   +   P ++     R  G+  Q     P ++  E+++           D   R    +    L+    L + L   P  + LS  Q++R+ IA  L+ NPS++F DEPT  LD+  +  V+R   R   + G T++   H PS+
Sbjct:   11 KTYRLGEIDVPVLRGISLKVSPGDFVALMGTSGSGKTTLMNILGCLDRPTSGHYRFDGQDVVDLTPDQRAALRNRKIGFVFQNFNLLPRMSAVENVMMPLSYAGGGVSDQNGR----ERAGALLTRMGLGEHLDNEP--SQLSGGQQQRVAIARALINNPSLLFADEPTGNLDSATSEEVLRVFQRLNEEEGVTIILVTHDPSV 208          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: ABCA3_HUMAN (ATP-binding cassette sub-family A member 3 OS=Homo sapiens GN=ABCA3 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 55/194 (28.35%), Postives = 95/194 (48.97%), Query Frame = 1
Query:   52 VGEDRLQLL--HSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQET--FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            V E R+ LL    +S A + G    L+G +GAGKTT   +L G ++     GD  + G+    +     +  GYC Q D    H+T  E L+  A LR    +  +     V+  +  + L+P  + LV        S   +++L+  + L+  P++IF+DEP++G+D  A  ++  TV    ++G+ ++ T H
Sbjct: 1389 VYEQRVPLLAVDRLSLAVQKGECFGLLGFNGAGKTTTFKMLTGEES--LTSGDAFVGGHRISSDVGKVRQRIGYCPQFDALLDHMTGREMLVMYARLR---GIPERHIGACVENTLRGLLLEPHANKLV-----RTYSGGNKRKLSTGIALIGEPAVIFLDEPSTGMDPVARRLLWDTVARARESGKAIIITSH 1572          

HSP 2 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 54/174 (31.03%), Postives = 87/174 (50.00%), Query Frame = 1
Query:  106 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQET--FARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            G +T L+G +GAGKTT + +L G        G   ISGY   Q+     +  G C Q DI   ++T+ E L + A L+  S      R+   +EV +++ +  L D          LS   R++L+I + L+A   ++ +DEPTSG+DA +   +   ++    + RT+V T H
Sbjct:  559 GQITVLLGHNGAGKTTTLSMLTGLFPP--TSGRAYISGYEISQDMVQIRKSLGLCPQHDILFDNLTVAEHLYFYAQLKGLS------RQKCPEEVKQMLHIIGLEDKWNSRSRF--LSGGMRRKLSIGIALIAGSKVLILDEPTSGMDAISRRAIWDLLQRQ-KSDRTIVLTTH 721          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: NODI_RHIGA (Nod factor export ATP-binding protein I OS=Rhizobium galegae GN=nodI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 56/186 (30.11%), Postives = 95/186 (51.08%), Query Frame = 1
Query:   73 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQET-FARVS-GYCEQTDIHSPHVTLYESLL-YSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            ++ S+S   R G    L+G +GAGK+T+  +L G  T     G I + G P   +   AR S G   Q D      T+ E+LL +  + ++S    T+  +  +  ++E  +L+   D  V     + LS   ++RLT+A  LV +P ++ +DEPT+GLD  A   +   +R+ +  G+T++ T H
Sbjct:   63 VVDSLSFGVRAGECFGLLGPNGAGKSTITRMLLGMATPS--AGKISVLGLPVPGKARLARASIGVVSQFDNLDMEFTVRENLLVFGRYFQMS----TRAIEKLIPSLLEFAQLEAKADVRV-----SDLSGGMKRRLTLARALVNDPQLLILDEPTTGLDPPARHQIWERLRSLLIRGKTILLTTH 237          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: NODI_RALEJ (Nod factor export ATP-binding protein I OS=Ralstonia eutropha (strain JMP134) GN=nodI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 54/176 (30.68%), Postives = 92/176 (52.27%), Query Frame = 1
Query:  106 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KKQETFARVSGYCEQTDIHSPHVTLYESL-LYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            G    L+G +GAGKTT + +L G  T     G + + G P   +  +   RV G   Q D   P  ++ E+L ++  +  LSS V  ++    V  ++E   L+   +A V       LS   R+RLT+A  L+ +P ++ MDEPT+GLD +A  ++   +++ + +G+T++ T H
Sbjct:   52 GQCFGLLGPNGAGKTTTLRLLLGLTTPA--GGSLTLCGEPIPERAPQARMRV-GVVPQFDNLDPDFSVIENLRIFGRYFGLSSAVIERR----VPALLEFARLENRANAQV-----RDLSGGMRRRLTVARALINDPDLLIMDEPTTGLDPQARHLIWERLKSLMASGKTILLTTH 215          
The following BLAST results are available for this feature:
BLAST of FC931060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
NODI_BURMA3.713e-1330.73Nod factor export ATP-binding protein I OS=Burkhol... [more]
YBD4_ENCCU4.850e-1326.92ABC transporter-like protein ECU11_1340 OS=Encepha... [more]
NODI_BURCA6.334e-1330.48Nod factor export ATP-binding protein I OS=Burkhol... [more]
ABCGK_DICDI6.334e-1326.80ABC transporter G family member 20 OS=Dictyosteliu... [more]
NODI_RHIS31.080e-1230.39Nod factor export ATP-binding protein I OS=Rhizobi... [more]
YWJA_BACSU1.411e-1229.32Uncharacterized ABC transporter ATP-binding protei... [more]
MACB_SYNFM1.843e-1230.39Macrolide export ATP-binding/permease protein macB... [more]
ABCA3_HUMAN2.407e-1228.35ATP-binding cassette sub-family A member 3 OS=Homo... [more]
NODI_RHIGA3.143e-1230.11Nod factor export ATP-binding protein I OS=Rhizobi... [more]
NODI_RALEJ3.143e-1230.68Nod factor export ATP-binding protein I OS=Ralston... [more]

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Properties
Property NameValue
Genbank descriptionC34101A02EF PostHarvP1 Citrus clementina cDNA clone C34101A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931060 ID=FC931060; Name=FC931060; organism=Citrus clementina; type=EST; length=669bp
GACCAGATGAATTACTACGTCGATATGCCAGCAGAAATGAAAACTGAAGG
AGTTGGAGAAGATCGTCTTCAACTGTTACACAGTGTCAGTGGTGCATTCA
GACCAGGAGTACTGACAGCATTAATGGGTGTAAGTGGTGCAGGGAAGACA
ACTCTAATGGATGTATTGGCAGGAAGGAAGACCGGAGGATACATCGAAGG
AGACATTAAGATTTCTGGTTACCCCAAAAAACAAGAAACGTTTGCTCGTG
TCAGTGGTTATTGTGAACAGACTGACATTCATTCTCCTCATGTTACTCTC
TATGAATCTCTTCTCTACTCAGCATGGCTTCGTCTTTCTTCAGACGTCGA
TACAAAAAAACGAAAGATATTCGTTGATGAAGTTATGGAGTTGGTTGAGC
TTAAACCATTGAGGGATGCTTTGGTTGGCCTTCCAGGAGTAAATGGTCTT
TCAACAGAGCAAAGGAAGAGATTGACAATTGCTGTAGAATTGGTTGCTAA
CCCTTCAATCATCTTCATGGACGAGCCAACATCTGGCCTTGATGCTAGAG
CAGCTGCTATTGTCATGCGTACGGTTAGAAATACAGTGGATACAGGGAGA
ACGGTTGTGTGCACAATTCATCAGCCAAGCATAGACATTTTTGAAGCATT
TGATGAGCTTTTGTTAATG
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