FC931060

Overview
NameFC931060
Unique NameFC931060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:16..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: CYSA_MESVI (Probable sulfate/thiosulfate import ATP-binding protein cysA OS=Mesostigma viride GN=cysA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 56/200 (28.00%), Postives = 100/200 (50.00%), Query Frame = 1
Query:   70 QLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETF-ARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 666
            Q L+ ++   + G + AL+G SG+GK+TL+ ++AG  T    EG I ISG      +  +R  G+  Q      ++T+Y+++ +   LR  S  D  ++   V++++ELV+L+ L     G      LS  QR+R+ +A  L   P ++ +DEP   LDAR    +   +R+  +        +     +  E  DE+++
Sbjct:   16 QALNHINLEIKSGSIIALLGPSGSGKSTLLRIIAGLDTPD--EGTIWISGKNASGYSIQSRNIGFVFQNYALFKNMTVYDNIAFGLELRRISFNDISRK---VNKLLELVQLQNL-----GHRYPAQLSGGQRQRIALARALAIEPKVLLLDEPFGALDARVRKNLRAWLRDLHNKFSITTIIVTHDQQEAMEIADEIVV 205          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: BMRA_BACSU (Multidrug resistance ABC transporter ATP-binding/permease protein bmrA OS=Bacillus subtilis GN=bmrA PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 67/212 (31.60%), Postives = 105/212 (49.53%), Query Frame = 1
Query:   10 NYYVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKKQETFARVSGYCEQTDIHSPHV--TLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 630
            N ++ +  +  + G   D+L +L  VS     G +TA++G SG GKTTL  +L      T G I  GD  +  Y    E++    GY  Q    SP +  T+ E++ Y    R  +D + +K       +  + EL    D  VG  G+  LS  QR+R+ IA  L+ NPSI+ +DE TS LD+++   V + +   ++ GRT +   H+ S
Sbjct:  336 NAHLPIQLDRVSFGYKPDQL-ILKEVSAVIEAGKVTAIVGPSGGGKTTLFKLLERFYSPTAGTIRLGDEPVDTY--SLESWREHIGYVSQ---ESPLMSGTIRENICYGLE-RDVTDAEIEKAAEMAYALNFIKELPNQFDTEVGERGIM-LSGGQRQRIAIARALLRNPSILMLDEATSSLDSQSEKSVQQALEVLME-GRTTIVIAHRLS 538          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: Y986_MYCTU (Uncharacterized ABC transporter ATP-binding protein Rv0986/MT1014 OS=Mycobacterium tuberculosis GN=Rv0986 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 56/201 (27.86%), Postives = 99/201 (49.25%), Query Frame = 1
Query:   55 GEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQET------FARVS-GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSI 633
            GE R Q+L  ++  F PG   AL+G SG+GK+TL+++++G +      GD+ I+G+   Q+T      F R   G   Q     P +T+ E++     L   + V  +K  +   +++E V +             + LS  +++R+ I+  L  NP ++  DEPT  LD+     V+  + + T   G+T++   H PS+
Sbjct:   19 GETRRQVLDHITFDFEPGEFVALLGQSGSGKSTLLNLISGIEKP--TTGDVTINGFAITQKTERDRTLFRRDQIGIVFQFFNLIPTLTVLENITLPQEL---AGVSQRKAAVVARDLLEKVGMADRERTF-----PDKLSGGEQQRVAISRALAHNPMLVLADEPTGNLDSDTGDKVLDVLLDLTRQAGKTLIMATHSPSM 209          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: CYSA_ACIAD (Sulfate/thiosulfate import ATP-binding protein cysA OS=Acinetobacter sp. (strain ADP1) GN=cysA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 56/203 (27.59%), Postives = 97/203 (47.78%), Query Frame = 1
Query:   76 LHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ-ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLR----LSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 669
            L ++S  F  G L AL+G SG GKTTL+ ++AG ++    EG I + G          R  G+  Q      H+++++++ +   +R      S+ + KKR   V  +++LV+L  L D        + LS  QR+R+ +A  L   P ++ +DEP   LDA+    + R +R   D        +     +  E  D++++M
Sbjct:   18 LKNISLDFPEGQLVALLGPSGCGKTTLLRIIAGLESAD--EGKILLEGADATNIHVRERQVGFVFQHYALFRHMSVFDNIAFGLRVRPRSTRPSEAEIKKR---VTRLLDLVQLGFLADRYP-----SQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRTLHDELHITSIFVTHDQEEALEVADQIIVM 210          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: CYSA2_RHIME (Sulfate/thiosulfate import ATP-binding protein cysA 2 OS=Rhizobium meliloti GN=cysA2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 62/222 (27.93%), Postives = 108/222 (48.65%), Query Frame = 1
Query:   34 EMKTEGVGED--RLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYPKKQETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLS----SDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLM 669
            E++ + + ++  R   L  VS   R G L AL+G SG+GKTTL+ ++AG ++   G    GD   S    K+    R  G+  Q      H+T+ +++ +   +R +    S  D ++R +   +++ELV+L  L            LS  QR+R+ +A  +   P+++ +DEP   LDA+    + R +R   D TG T +   H    +  E  D +++M
Sbjct:    2 EVRVQNIRKEFGRFPALEDVSLDIRSGELIALLGPSGSGKTTLLRLVAGLESPTEGTIFFGDEDAS----KKTVQQRNIGFVFQHYALFRHMTVLDNVAFGLKVRPAKRRPSAADIRRRAV---DLLELVQLSGLERRYPA-----QLSGGQRQRVALARAMAVEPNVLLLDEPFGALDAQVRKELRRWLREIHDRTGHTTIFVTHDQE-EALELADRVVVM 210          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: ABCA7_MOUSE (ATP-binding cassette sub-family A member 7 OS=Mus musculus GN=Abca7 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 55/180 (30.56%), Postives = 86/180 (47.78%), Query Frame = 1
Query:  103 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFA--RVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            PG    L+GV+GAGKT+   ++ G        G+  ++G+   QE  A  R  GYC Q+D     +T  E L   A LR        + ++    +  LV L        GLP          S   +++L  A+ LV +P+++F+DEPT+G+D  A   +  ++ + V  GR+VV T H
Sbjct: 1833 PGECFGLLGVNGAGKTSTFRMVTGDTLPS--SGEAVLAGHNVAQERSAAHRSMGYCPQSDAIFDLLTGREHLELFARLR-----GVPEAQVAQTALSGLVRL--------GLPSYADRPAGTYSGGNKRKLATALALVGDPAVVFLDEPTTGMDPSARRFLWNSLLSVVREGRSVVLTSH 1997          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: ABCA4_HUMAN (Retinal-specific ATP-binding cassette transporter OS=Homo sapiens GN=ABCA4 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 53/180 (29.44%), Postives = 85/180 (47.22%), Query Frame = 1
Query:  100 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS------GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            RPG    L+GV+GAGKTT   +L G  T     GD  ++G    +     +S      GYC Q D     +T  E L   A LR    V  ++ +   +  ++ + L    D L G       S   +++L+ A+ L+  P ++ +DEPT+G+D +A  ++   + + +  GR VV T H
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISEVHQNMGYCPQFDAIDELLTGREHLYLYARLR---GVPAEEIEKVANWSIKSLGLTVYADCLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNVIVSIIREGRAVVLTSH 2128          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: ABC8B_MOUSE (ATP-binding cassette sub-family A member 8-B OS=Mus musculus GN=Abca8b PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 46/165 (27.88%), Postives = 87/165 (52.73%), Query Frame = 1
Query:   61 DRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQ----ETFARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 543
            ++++ L  ++     G +TA++G SGAGK+TL+++L+G       +G + I      +    E   R++G C Q ++    +T+ E+L   A +R     D +K    V  V+  +E+K +++ L        LS  Q+++LT  + ++ +  I  +DEPT+GLD
Sbjct:  493 NKIEALKDLTLDIYEGQITAVLGHSGAGKSTLLNILSGLSVP--TKGSVTIYNNNLSEMADLENILRIAGVCPQANVQFDFLTVRENLRLFAKIRGIPPQDVEKE---VQRVLLELEMKNIQNIL-----AQNLSGGQKRKLTFGIAILGDSQIFLLDEPTAGLD 647          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: YFIL_BACSU (Uncharacterized ABC transporter ATP-binding protein yfiL OS=Bacillus subtilis GN=yfiL PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.475e-11
Identity = 49/185 (26.49%), Postives = 90/185 (48.65%), Query Frame = 1
Query:   73 LLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKKQETFARVS--GYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            ++  +S + + G    L+G +GAGK+T + +++G     +  G+I + GY   +ET       G   Q     P +T +E+L++   +   +  + KKR   V E + L E    +        +   S   ++R+ I   L+  P ++ MDEPT G+D ++   ++ TV+   +TG TV+ T H
Sbjct:   16 IVKGISFSLKKGESFGLLGPNGAGKSTTISMISGLVP--HDSGNITVGGYVIGKETAKAKQKIGIVPQEIALYPTLTAHENLMFWGKMYGLTHGEAKKRAAEVLEYVGLTERAKDK--------IETFSGGMKRRINIGAALMHKPELLIMDEPTVGIDPQSRNHILETVKQLNETGMTVIYTSH 190          
BLAST of FC931060 vs. ExPASy Swiss-Prot
Match: Y4021_METAC (Putative ABC transporter ATP-binding protein MA_4021 OS=Methanosarcina acetivorans GN=MA_4021 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.475e-11
Identity = 55/206 (26.70%), Postives = 98/206 (47.57%), Query Frame = 1
Query:   52 VGEDRLQLLHSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYIEGDIKISGYPKKQETF-------------ARVSGYCEQTDIHSPHVTLYESLLYSAWLRLSSDVDTKKRKIFVDEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 621
            VGE  + +L  +S    PG   +++G +G+GK+TL+ +L G      G +   D KI      +E F              +V    + +D+     T++E + +     L  ++  ++ K  V EV+E++EL  L+D        + LS  ++K+L IA  L  NP ++ +DEPT+GLD R    +   ++     G+T++   H
Sbjct:   15 VGE--ITVLKDISFKVDPGEQISIIGSNGSGKSTLLSLLDGLIYPTVGEFYAFDNKIV-----EEVFDTIKDNEFRSYFRTKVGFLFQNSDVQLFSPTVFEEVAFGP---LQLNITPEEVKTRVLEVLEMMELTKLKDR-----SPHTLSGGEKKKLCIATVLATNPDVLLLDEPTAGLDPRTQLWLTELLQELGSMGKTIIIATH 205          
The following BLAST results are available for this feature:
BLAST of FC931060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
CYSA_MESVI2.038e-1128.00Probable sulfate/thiosulfate import ATP-binding pr... [more]
BMRA_BACSU2.038e-1131.60Multidrug resistance ABC transporter ATP-binding/p... [more]
Y986_MYCTU2.661e-1127.86Uncharacterized ABC transporter ATP-binding protei... [more]
CYSA_ACIAD2.661e-1127.59Sulfate/thiosulfate import ATP-binding protein cys... [more]
CYSA2_RHIME2.661e-1127.93Sulfate/thiosulfate import ATP-binding protein cys... [more]
ABCA7_MOUSE2.661e-1130.56ATP-binding cassette sub-family A member 7 OS=Mus ... [more]
ABCA4_HUMAN2.661e-1129.44Retinal-specific ATP-binding cassette transporter ... [more]
ABC8B_MOUSE2.661e-1127.88ATP-binding cassette sub-family A member 8-B OS=Mu... [more]
YFIL_BACSU3.475e-1126.49Uncharacterized ABC transporter ATP-binding protei... [more]
Y4021_METAC3.475e-1126.70Putative ABC transporter ATP-binding protein MA_40... [more]

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Properties
Property NameValue
Genbank descriptionC34101A02EF PostHarvP1 Citrus clementina cDNA clone C34101A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931060 ID=FC931060; Name=FC931060; organism=Citrus clementina; type=EST; length=669bp
GACCAGATGAATTACTACGTCGATATGCCAGCAGAAATGAAAACTGAAGG
AGTTGGAGAAGATCGTCTTCAACTGTTACACAGTGTCAGTGGTGCATTCA
GACCAGGAGTACTGACAGCATTAATGGGTGTAAGTGGTGCAGGGAAGACA
ACTCTAATGGATGTATTGGCAGGAAGGAAGACCGGAGGATACATCGAAGG
AGACATTAAGATTTCTGGTTACCCCAAAAAACAAGAAACGTTTGCTCGTG
TCAGTGGTTATTGTGAACAGACTGACATTCATTCTCCTCATGTTACTCTC
TATGAATCTCTTCTCTACTCAGCATGGCTTCGTCTTTCTTCAGACGTCGA
TACAAAAAAACGAAAGATATTCGTTGATGAAGTTATGGAGTTGGTTGAGC
TTAAACCATTGAGGGATGCTTTGGTTGGCCTTCCAGGAGTAAATGGTCTT
TCAACAGAGCAAAGGAAGAGATTGACAATTGCTGTAGAATTGGTTGCTAA
CCCTTCAATCATCTTCATGGACGAGCCAACATCTGGCCTTGATGCTAGAG
CAGCTGCTATTGTCATGCGTACGGTTAGAAATACAGTGGATACAGGGAGA
ACGGTTGTGTGCACAATTCATCAGCCAAGCATAGACATTTTTGAAGCATT
TGATGAGCTTTTGTTAATG
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