FC931063

Overview
NameFC931063
Unique NameFC931063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1895 contig Ccv1_Contig1895:1..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931063 vs. ExPASy Swiss-Prot
Match: MDMC_STRMY (O-methyltransferase mdmC OS=Streptomyces mycarofaciens GN=mdmC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.107e-26
Identity = 72/171 (42.11%), Postives = 103/171 (60.23%), Query Frame = 3
Query:  135 SDALYQYILETSVYPREAESMKELRELTAKHPWN-VMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLVELVKVGGVIGYDNTLWNG 644
            S AL  Y    SV  RE   ++EL ++TA+ P    M    +E QFL +L++LV A+  +EIG +TGYS L  A ALP  G+I+  DI+ +   +G P  Q+AGV   ID R G A   L  L ++    G+FD +FVDADK  YL+Y+++ + LV+ GG++  DNTL+ G
Sbjct:    8 SPALLDYA--RSVALREDGLLRELHDMTAQLPGGRAMQIMPEEAQFLGLLIRLVGARRVLEIGTFTGYSTLCMARALPAGGRIVTCDISDKWPGIGAPFWQRAGVDGLIDLRIGDAARTLAEL-RERDGDGAFDLVFVDADKAGYLHYYEQALALVRPGGLVAIDNTLFFG 175          
BLAST of FC931063 vs. ExPASy Swiss-Prot
Match: CAMT2_DICDI (Probable caffeoyl-CoA O-methyltransferase 2 OS=Dictyostelium discoideum GN=omt6 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 59/150 (39.33%), Postives = 97/150 (64.67%), Query Frame = 3
Query:  198 KELRELTAKH-PWNVMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLVELVKVGGVIGYDNTLWNG 644
            KEL + T ++   ++M T A++  F  +L++++NAK T++IGV+TG S L  ALA+ D+G+++A D++ E  +  L    KAGV HKI+ +  PA   L  LI D+    ++DF+F+DADK  Y  Y++  ++L++ GG+I  DN L +G
Sbjct:   36 KELIQFTKENIERHIMLTQAEQCSFFKLLIQVLNAKKTIDIGVFTGLSSLTAALAMGDEGRVVACDVSTEYTQHALKFWAKAGVDHKINLKIQPASKTLQELI-DQGEENTYDFVFIDADKTGYDTYYELSLKLIRKGGIIAIDNVLQHG 184          
BLAST of FC931063 vs. ExPASy Swiss-Prot
Match: CAMT1_DICDI (Probable caffeoyl-CoA O-methyltransferase 1 OS=Dictyostelium discoideum GN=omt5 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.768e-24
Identity = 58/150 (38.67%), Postives = 97/150 (64.67%), Query Frame = 3
Query:  198 KELRELTAKH-PWNVMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDLLIQDEKNHGSFDFIFVDADKDNYLNYHKRLVELVKVGGVIGYDNTLWNG 644
            KEL + T ++   ++M T A++  F  +L++++NAK T++IGV+TG S L  ALA+ D+G+++A D++ +  +  L    KAGV HKI+ +  PA   L  LI D+    ++DF+F+DADK  Y  Y++  ++L++ GG+I  DN L +G
Sbjct:   35 KELIQFTKENIERHIMLTQAEQCSFFKLLIQVLNAKKTIDIGVFTGLSSLTAALAMGDEGRVVACDVSTDYTQHALKFWAKAGVDHKINLKIQPASKTLQELI-DQGEENTYDFVFIDADKTGYDTYYELSLKLIRKGGIIAIDNVLQHG 183          
The following BLAST results are available for this feature:
BLAST of FC931063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
MDMC_STRMY1.107e-2642.11O-methyltransferase mdmC OS=Streptomyces mycarofac... [more]
CAMT2_DICDI7.935e-2539.33Probable caffeoyl-CoA O-methyltransferase 2 OS=Dic... [more]
CAMT1_DICDI1.768e-2438.67Probable caffeoyl-CoA O-methyltransferase 1 OS=Dic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34101A05EF PostHarvP1 Citrus clementina cDNA clone C34101A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931063 ID=FC931063; Name=FC931063; organism=Citrus clementina; type=EST; length=706bp
GAGAGACAAGTTACTCTTTAATCTCCAAAATCCAACATCAAAAGAAAAGA
CTTGCGTCAATGGCTTCCAACGCAGAAGATCAACAAAACCAACAAGGCGG
ACACAAGGAAGTTGGCCACAAGAGCCTGCTCCAATCCGATGCCCTCTACC
AGTATATTCTTGAAACCAGTGTGTACCCAAGAGAGGCTGAATCAATGAAG
GAGCTTAGAGAATTGACTGCCAAACATCCATGGAACGTTATGACAACGTC
GGCAGACGAAGGGCAGTTCTTGAACATGCTGTTGAAGCTGGTCAATGCAA
AGAACACAATGGAGATTGGAGTCTACACAGGCTACTCTCTTTTGGCCACT
GCCCTTGCCCTTCCTGATGACGGAAAGATTTTGGCCATGGACATCAACAG
AGAAAATTATGAATTGGGGCTGCCAGTTATCCAAAAAGCTGGTGTTGCTC
ACAAGATTGACTTCAGAGAAGGCCCTGCCCTGCCTGTTCTTGACCTACTG
ATCCAAGATGAGAAGAACCATGGGTCCTTTGACTTCATATTTGTGGACGC
GGATAAGGACAACTACCTAAACTACCACAAGAGGTTGGTTGAGTTGGTGA
AGGTTGGAGGGGTGATCGGGTACGACAACACCCTATGGAACGGATCCGTC
GTGGCGCCACCTGATGCTCCCCCTTAGAAAGTACGTAGGTATTACCGAGA
CTTCGT
back to top