FC931064

Overview
NameFC931064
Unique NameFC931064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15262 contig Ccv1_Contig15262:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: MACD1_RAT (MACRO domain-containing protein 1 (Fragment) OS=Rattus norvegicus GN=Macrod1 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.236e-26
Identity = 61/127 (48.03%), Postives = 84/127 (66.14%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIY--GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 695
            VN+AN  +LGGGG DG IHRAAG  L + C  +        C TG+A+IT G++LPA HVIHTVGPI     T +  A LRS Y +SL L   + ++ +AFP IS G++ YP+EEAA + ++T++E+
Sbjct:  103 VNAANNSLLGGGGVDGCIHRAAGSLLTDECRTLQN------CETGKAKITCGYRLPAKHVIHTVGPIAVGQPTASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPNEEAAEVVLATLREW 223          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: YGB2_RALEU (UPF0189 protein in gbd 3'region OS=Ralstonia eutropha PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.450e-26
Identity = 62/125 (49.60%), Postives = 83/125 (66.40%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIY-GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKE 692
            VN+AN  +LGGGG DGAIH A G  + EAC  + +   G  CPTGEA IT G  LPA +VIH VGP++ G     +  L +AY+NS+ LA  ++++ +AFP IS G+Y +P E AA IAI+ V+E
Sbjct:   22 VNAANSGLLGGGGVDGAIHGAGGSAIKEACRAIRDTQGG--CPTGEAVITTGGHLPAPYVIHAVGPVWQGGDQGEDELLANAYRNSIRLAAQHHLRRLAFPNISTGIYAFPRERAADIAIAAVRE 144          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: MACD1_HUMAN (MACRO domain-containing protein 1 OS=Homo sapiens GN=MACROD1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25
Identity = 62/127 (48.82%), Postives = 85/127 (66.93%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI-YG-VTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 695
            VN+AN  +LGGGG DG IHRAAGP L + C  +        C TG+A+IT G++LPA +VIHTVGPI YG  + +  A LRS Y +SL L   + ++ +AFP IS G++ YP E AA I ++T++E+
Sbjct:  170 VNAANSSLLGGGGVDGCIHRAAGPLLTDECRTLQS------CKTGKAKITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREW 290          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: MACD1_MOUSE (MACRO domain-containing protein 1 OS=Mus musculus GN=Macrod1 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.045e-24
Identity = 59/127 (46.46%), Postives = 84/127 (66.14%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIY--GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 695
            VN+AN  +LGGGG DG IHRAAG  L + C  +        C TG+A+IT G++LPA +VIHTVGPI     T +  A LRS Y +SL L   + ++ +AFP IS G++ YP+EEAA + +++++E+
Sbjct:  168 VNAANSSLLGGGGVDGCIHRAAGSLLTDECRTLQN------CETGKAKITCGYRLPAKYVIHTVGPIAVGQPTASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPNEEAAEVVLASLREW 288          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: Y719_THEVO (UPF0189 protein TV0719 OS=Thermoplasma volcanium GN=TV0719 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.186e-24
Identity = 60/128 (46.88%), Postives = 78/128 (60.94%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAND 704
            VN+AN  ++GGGG DGAIH   G  +   C  +    +    P GEA IT G KL A +VIHTVGPIY        +L S+Y  SL +AK + I+ IAFPAIS G+Y YP EEA+ IA+  V +F ++
Sbjct:   27 VNAANPSLMGGGGVDGAIHLKGGKTIDLECAELRRTKWPKGLPPGEADITSGGKLKAKYVIHTVGPIYRGQEEDAETLYSSYYRSLEIAKIHGIKCIAFPAISTGIYGYPFEEASVIALKAVTDFLSN 154          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: MACD1_BOVIN (MACRO domain-containing protein 1 OS=Bos taurus GN=MACROD1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.186e-24
Identity = 59/127 (46.46%), Postives = 84/127 (66.14%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI-YG-VTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 695
            VN+AN  +LGGGG DG IHRAAGP L + C  +        C TG+A+IT G++LPA +VIHTVGPI +G  + +  A LRS Y +SL L   + ++  AFP IS G++ YP+E AA + ++ ++E+
Sbjct:  170 VNAANSSLLGGGGVDGCIHRAAGPLLTDECRTLQ------NCETGKAKITCGYRLPAKYVIHTVGPIAHGEPSASQAAELRSCYLSSLDLLLEHRLRSAAFPCISTGVFGYPNEAAAEVVLTALREW 290          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: Y189_STRGR (UPF0189 protein in non 5'region OS=Streptomyces griseus PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.845e-24
Identity = 56/122 (45.90%), Postives = 76/122 (62.30%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTV 686
            VN+AN  +LGGGG DGAIHR  GP++L AC  +    +G   PTG+A  T   +L A  ++HTVGP++    +  A L S Y+ SL LA     + IAFPAIS G+Y +P ++ A IA+ TV
Sbjct:   25 VNAANSSLLGGGGVDGAIHRRGGPDILAACRELRASRYGKGLPTGQAVATTAGRLDARWIVHTVGPVFSGAQDRSALLASCYRESLRLAAELGARSIAFPAISTGIYGWPMDDGARIAVRTV 146          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: Y1105_THEAC (UPF0189 protein Ta1105 OS=Thermoplasma acidophilum GN=Ta1105 PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.971e-23
Identity = 59/129 (45.74%), Postives = 80/129 (62.02%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIY-GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAND 704
            VN+AN  ++GGGG DGAIH AAGPEL     ++    +    P GEA IT G++L ASH+IHTVGP++ G     +  L  +Y++ L LA+   I  IAFPA+S G Y +P + A  IAI +V +F  D
Sbjct:   27 VNAANSSLMGGGGVDGAIHSAAGPELNGELVKIRRERYPNGLPPGEAVITRGYRLKASHIIHTVGPVWMGGRNGEDDVLYRSYRSCLDLAREFGIHDIAFPALSTGAYGFPFDRAERIAIRSVIDFLKD 155          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: Y2748_LISMF (UPF0189 protein LMOf2365_2748 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=LMOf2365_2748 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.390e-23
Identity = 62/130 (47.69%), Postives = 84/130 (64.62%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRV-PEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEAS-LRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAND 704
            VN+AN  +LGGGG DGAIH+AAGP+LL+ C  V   +G    CP GEA IT    L AS++IH VGPI+    + EA+ L S Y  +L LA    +  IAFP IS G+Y +P + AA +A+ TV+++A +
Sbjct:   19 VNAANPGLLGGGGVDGAIHQAAGPDLLKECQEVINRIG---TCPAGEAVITSAGDLQASYIIHAVGPIWKDGEHQEANKLASCYWKALDLAAGKELTSIAFPNISTGVYGFPKKLAAEVALYTVRKWAEE 145          
BLAST of FC931064 vs. ExPASy Swiss-Prot
Match: Y2759_LISMO (UPF0189 protein lmo2759 OS=Listeria monocytogenes GN=lmo2759 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23
Identity = 61/130 (46.92%), Postives = 85/130 (65.38%), Query Frame = 3
Query:  321 VNSANEKMLGGGGCDGAIHRAAGPELLEACYRV-PEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEAS-LRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAND 704
            VN+AN  +LGGGG DGAIH+AAGP+LL+ C  V   +G    CP GEA IT    L A+++IH VGPI+    + EA+ L S Y  +L LA   ++  IAFP IS G+Y +P + AA +A+ TV+++A +
Sbjct:   19 VNAANSGLLGGGGVDGAIHQAAGPDLLKECQEVINRIG---SCPAGEAVITSAGDLKATYIIHAVGPIWKDGEHQEANKLASCYWKALDLAAGKDLTSIAFPNISTGVYGFPKKLAAEVALYTVRKWAEE 145          
The following BLAST results are available for this feature:
BLAST of FC931064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
MACD1_RAT7.236e-2648.03MACRO domain-containing protein 1 (Fragment) OS=Ra... [more]
YGB2_RALEU9.450e-2649.60UPF0189 protein in gbd 3'region OS=Ralstonia eutro... [more]
MACD1_HUMAN2.105e-2548.82MACRO domain-containing protein 1 OS=Homo sapiens ... [more]
MACD1_MOUSE1.045e-2446.46MACRO domain-containing protein 1 OS=Mus musculus ... [more]
Y719_THEVO5.186e-2446.88UPF0189 protein TV0719 OS=Thermoplasma volcanium G... [more]
MACD1_BOVIN5.186e-2446.46MACRO domain-containing protein 1 OS=Bos taurus GN... [more]
Y189_STRGR8.845e-2445.90UPF0189 protein in non 5'region OS=Streptomyces gr... [more]
Y1105_THEAC1.971e-2345.74UPF0189 protein Ta1105 OS=Thermoplasma acidophilum... [more]
Y2748_LISMF4.390e-2347.69UPF0189 protein LMOf2365_2748 OS=Listeria monocyto... [more]
Y2759_LISMO5.733e-2346.92UPF0189 protein lmo2759 OS=Listeria monocytogenes ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34101A07EF PostHarvP1 Citrus clementina cDNA clone C34101A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931064 ID=FC931064; Name=FC931064; organism=Citrus clementina; type=EST; length=708bp
GGAGCTTGATTGATCAGGGATTATGAATGCTTCCTCTACCAAAGGATCTT
TTTGAGAGTGCTTTTGGTAGTGCCTAAAGCGCTTTTAAGTAGCCAAGAGC
CATTGTGTCTATTGGTGTTTTCCTAGAGATCTTTTGACATTAGAAAGTGC
TTTTTGAACAAATAATTTATTGGTGTTTTTGCAAGAAGAACAATTGACTT
GAAAGTACTTTTTTGCAAAATCACTGGCAGCACACCTTACAGTTAATGAT
CGCTTGATTGAATAGGAAGGTTGGTGTTGAAAAGGGAAATTGCAATTGAT
TGAATGGTTGTTTGCTATAGGTTAATTCAGCCAATGAGAAAATGCTTGGA
GGTGGCGGTTGCGATGGAGCTATACATAGGGCTGCAGGACCAGAACTTCT
AGAAGCTTGTTATAGAGTTCCAGAAGTTGGATTTGGAATCCGTTGTCCCA
CAGGAGAAGCAAGAATTACACCAGGTTTTAAATTGCCTGCATCTCATGTG
ATTCACACTGTTGGCCCAATCTATGGTGTTACTATTAACCCTGAAGCTTC
CCTGAGAAGTGCGTACAAGAACAGCTTGAGCTTGGCCAAAGCGAATAACA
TTCAGTACATTGCTTTTCCTGCCATATCGTGTGGCTTATATTGTTATCCT
CATGAGGAAGCCGCCACAATAGCTATATCTACAGTCAAAGAATTTGCTAA
TGACTTTA
back to top