FC931074

Overview
NameFC931074
Unique NameFC931074
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_DESDG (S-adenosylmethionine synthetase OS=Desulfovibrio desulfuricans (strain G20) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 59/102 (57.84%), Postives = 76/102 (74.51%), Query Frame = 1
Query:  217 FTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            FTSESV EGHPDK+ D++SDAVLD  L QDPDS+VACET   T M ++ GEITT+   D  ++VRDT + IG+ ++ +G D   C VL +I++QSPDIAQGV
Sbjct:   10 FTSESVTEGHPDKVADQISDAVLDVLLEQDPDSRVACETMVTTGMAIIAGEITTRGYADLPQVVRDTIKEIGYNNSSMGFDWQTCAVLSSIDKQSPDIAQGV 111          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_CYAP4 (S-adenosylmethionine synthetase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 59/107 (55.14%), Postives = 80/107 (74.77%), Query Frame = 1
Query:  205 ETFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 525
            + +LFTSESV EGHPDK+CD++SD +LDA L+QDP S+VA E    T +V++ GEIT++A V+Y  +VR     IG+TSA+ G  A  C VLV +++QSPDIAQGV+
Sbjct:    3 QRYLFTSESVTEGHPDKICDQISDTILDALLSQDPQSRVAAEVVVNTGLVLITGEITSQAQVNYVDLVRKKITEIGYTSAENGFCATSCAVLVALDEQSPDIAQGVN 109          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_CLAMS (S-adenosylmethionine synthetase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = 1
Query:  214 LFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            LFTSESV EGHPDK+CD++SD++LDA L QDP S+ A ET   T +V V GE+TT   VD  +IVRD  R IG+ S++VG D  +C V V+I  QSPDIAQGV
Sbjct:    6 LFTSESVTEGHPDKICDQISDSILDALLTQDPSSRAAVETLVTTGLVHVAGEVTTSGYVDIPQIVRDRIRDIGYDSSEVGFDGSNCGVTVSIGAQSPDIAQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_BURS3 (S-adenosylmethionine synthetase OS=Burkholderia sp. (strain 383) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 61/104 (58.65%), Postives = 79/104 (75.96%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            +LFTSESV+EGHPDK+ D++SDA+LDA L QD  S+VA ET   T +V++ GEITT AN+DY +I RDT + IG+ + D G+D   C VLV  ++QSPDIAQGV
Sbjct:    5 YLFTSESVSEGHPDKVADQISDAILDAILEQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_BURP8 (S-adenosylmethionine synthetase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 61/104 (58.65%), Postives = 80/104 (76.92%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            +LFTSESV+EGHPDK+ D++SDA+LDA LAQD  S+VA ET   T +V++ GEITT ANVDY ++ R+T + IG+ + D G+D   C VLV  ++QSPDIAQGV
Sbjct:    5 YLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANVDYIQVARETIKRIGYDNTDYGIDYRGCAVLVAYDKQSPDIAQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_BURCM (S-adenosylmethionine synthetase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 61/104 (58.65%), Postives = 79/104 (75.96%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            +LFTSESV+EGHPDK+ D++SDA+LDA L QD  S+VA ET   T +V++ GEITT AN+DY +I RDT + IG+ + D G+D   C VLV  ++QSPDIAQGV
Sbjct:    5 YLFTSESVSEGHPDKVADQISDAILDAILEQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_BURCJ (S-adenosylmethionine synthetase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 61/104 (58.65%), Postives = 79/104 (75.96%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            +LFTSESV+EGHPDK+ D++SDA+LDA L QD  S+VA ET   T +V++ GEITT AN+DY +I RDT + IG+ + D G+D   C VLV  ++QSPDIAQGV
Sbjct:    5 YLFTSESVSEGHPDKVADQISDAILDAILEQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_BURCH (S-adenosylmethionine synthetase OS=Burkholderia cenocepacia (strain HI2424) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 61/104 (58.65%), Postives = 79/104 (75.96%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            +LFTSESV+EGHPDK+ D++SDA+LDA L QD  S+VA ET   T +V++ GEITT AN+DY +I RDT + IG+ + D G+D   C VLV  ++QSPDIAQGV
Sbjct:    5 YLFTSESVSEGHPDKVADQISDAILDAILEQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_BURCC (S-adenosylmethionine synthetase OS=Burkholderia cenocepacia (strain MC0-3) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 61/104 (58.65%), Postives = 79/104 (75.96%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            +LFTSESV+EGHPDK+ D++SDA+LDA L QD  S+VA ET   T +V++ GEITT AN+DY +I RDT + IG+ + D G+D   C VLV  ++QSPDIAQGV
Sbjct:    5 YLFTSESVSEGHPDKVADQISDAILDAILEQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_BURCA (S-adenosylmethionine synthetase OS=Burkholderia cenocepacia (strain AU 1054) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 61/104 (58.65%), Postives = 79/104 (75.96%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            +LFTSESV+EGHPDK+ D++SDA+LDA L QD  S+VA ET   T +V++ GEITT AN+DY +I RDT + IG+ + D G+D   C VLV  ++QSPDIAQGV
Sbjct:    5 YLFTSESVSEGHPDKVADQISDAILDAILEQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGV 108          
The following BLAST results are available for this feature:
BLAST of FC931074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_DESDG7.523e-2957.84S-adenosylmethionine synthetase OS=Desulfovibrio d... [more]
METK_CYAP47.523e-2955.14S-adenosylmethionine synthetase OS=Cyanothece sp. ... [more]
METK_CLAMS7.523e-2959.22S-adenosylmethionine synthetase OS=Clavibacter mic... [more]
METK_BURS37.523e-2958.65S-adenosylmethionine synthetase OS=Burkholderia sp... [more]
METK_BURP87.523e-2958.65S-adenosylmethionine synthetase OS=Burkholderia ph... [more]
METK_BURCM7.523e-2958.65S-adenosylmethionine synthetase OS=Burkholderia am... [more]
METK_BURCJ7.523e-2958.65S-adenosylmethionine synthetase OS=Burkholderia ce... [more]
METK_BURCH7.523e-2958.65S-adenosylmethionine synthetase OS=Burkholderia ce... [more]
METK_BURCC7.523e-2958.65S-adenosylmethionine synthetase OS=Burkholderia ce... [more]
METK_BURCA7.523e-2958.65S-adenosylmethionine synthetase OS=Burkholderia ce... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34101B05EF PostHarvP1 Citrus clementina cDNA clone C34101B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931074 ID=FC931074; Name=FC931074; organism=Citrus clementina; type=EST; length=560bp
GAAAAAAAACGAGAGAACTGCGAGTCGAGCTGCCGTTTTAGCGCCTCGCT
CGCTTCTCGCAGCGTATGCATATCGTGTTTCTCTCGGTCTTCTGGGTACT
GACCATTTTCGTATATCACCACCTTCAATTCCATTTGTACTCGCACCACG
GCCTCCTGCAAAGCGAAAGCTGCAGCTTCAGGTTAAATCAAATTAAAGAA
AATGGAAACATTTCTTTTCACATCAGAATCAGTGAACGAGGGTCACCCGG
ACAAGCTGTGTGACCGAGTTTCGGACGCAGTACTGGACGCGTGTTTGGCT
CAGGATCCTGACAGCAAAGTTGCTTGTGAAACATGCACAAAGACCAACAT
GGTCATGGTTTTTGGAGAAATTACAACCAAGGCCAATGTGGATTACGAGA
AAATCGTGCGTGATACATGCAGATCGATTGGGTTCACATCGGCCGATGTG
GGGCTTGATGCTGATCACTGCAAAGTTCTTGTTAATATTGAGCAGCAGAG
CCCTGACATTGCTCAGGGTGTTCATGGGCATCTCACAAAGCGGCCTGAGG
AGATTGGTGC
back to top