FC931074

Overview
NameFC931074
Unique NameFC931074
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_CLOTH (S-adenosylmethionine synthetase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=metK PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.608e-31
Identity = 66/114 (57.89%), Postives = 81/114 (71.05%), Query Frame = 1
Query:  214 LFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEI 555
            LFTSESV EGHPDK+CD++SDAVLDA  +QDP ++VACET   T +V+V GEITT   VD  KIVR T R IG+  A  G D D C VL +I++QSPDIA GV+  L  +  E+
Sbjct:    5 LFTSESVTEGHPDKICDQISDAVLDAIFSQDPMARVACETAVTTGLVLVTGEITTNCYVDIPKIVRSTIREIGYDRAKYGFDCDTCAVLTSIDEQSPDIAMGVNKALEAKTGEM 118          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_CLOBA (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=metK PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.608e-31
Identity = 62/103 (60.19%), Postives = 78/103 (75.73%), Query Frame = 1
Query:  214 LFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            LFTSESV EGHPDK+CD++SDA+LDA LA+D +++VACETCT T +VMV GEI+T   VD  K+VR+T R IG+  A  G D D C V+  I++QS DIA GV
Sbjct:    4 LFTSESVTEGHPDKMCDQISDAILDAILAKDSNARVACETCTTTGLVMVMGEISTNCYVDIPKVVRETVREIGYDRAKYGFDCDTCSVMTTIDEQSADIAMGV 106          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_SYNS3 (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain CC9311) GN=metK PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.712e-31
Identity = 66/108 (61.11%), Postives = 81/108 (75.00%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADV-GLDADHCKVLVNIEQQSPDIAQGV 522
            M  ++FTSESV EGHPDK+CD+VSDAVLDA LAQD  S+VACET   T + M+ GE+T+KA VD+  +VRD  R IG++ A   G DA  C VLV ++QQSPDIAQGV
Sbjct:    1 MSRYVFTSESVTEGHPDKICDQVSDAVLDALLAQDSTSRVACETVVNTGLCMITGEVTSKAQVDFIHLVRDVIRDIGYSGARAGGFDATSCAVLVALDQQSPDIAQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_PSYIN (S-adenosylmethionine synthetase OS=Psychromonas ingrahamii (strain 37) GN=metK PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.712e-31
Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            M   LFTSESV+EGHPDK+ D++SDAVLDA L QD  ++VACET  KT MVMV GEITT A VD E+I R+T R+IG+TS+++G DAD C +L  I +QSPDI QGV
Sbjct:    1 MSRDLFTSESVSEGHPDKIADQISDAVLDAILKQDKKARVACETYVKTGMVMVGGEITTDAWVDIEEITRNTVRNIGYTSSEMGFDADSCAILNVIGKQSPDINQGV 107          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_LEGPL (S-adenosylmethionine synthetase OS=Legionella pneumophila (strain Lens) GN=metK PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.712e-31
Identity = 66/112 (58.93%), Postives = 82/112 (73.21%), Query Frame = 1
Query:  205 ETFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTK 540
            E ++FTSESV+EGHPDK+ D++SDA+LDA LAQDP ++VACE   KT MV+V GEITTKA VD E I R   + IG+ S+ +G D + C VL  I +QSPDIAQGV    TK
Sbjct:    3 EVYVFTSESVSEGHPDKIADQISDAILDAILAQDPKARVACEVLVKTGMVLVGGEITTKAWVDVEDITRHVIKDIGYNSSQMGFDWESCAVLSAIGKQSPDIAQGVDNQQTK 114          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_SODGM (S-adenosylmethionine synthetase OS=Sodalis glossinidius (strain morsitans) GN=metK PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.154e-31
Identity = 67/107 (62.62%), Postives = 81/107 (75.70%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            M   LFTSESV+EGHPDK+ D++SDAVLDA LAQDP ++VACET  KT MV+V GEITT A VD E++ R T R IG+  +D+G DA+ C VL  I +QSPDI QGV
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILAQDPKARVACETYVKTGMVLVGGEITTSAWVDIEELTRSTIREIGYIHSDMGFDANSCAVLSAIGKQSPDINQGV 107          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_ENTFA (S-adenosylmethionine synthetase OS=Enterococcus faecalis GN=metK PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.154e-31
Identity = 67/116 (57.76%), Postives = 85/116 (73.28%), Query Frame = 1
Query:  205 ETFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 552
            E  LFTSESV+EGHPDK+ D+VSDA+LDA L +DP ++VACET   T +V+VFGEI+T A VD +KIVR T + IG+T A  G D +   VLV I++QSPDIAQGV   L  R ++
Sbjct:    3 ERHLFTSESVSEGHPDKVADQVSDAILDAILEKDPMARVACETSVTTGLVLVFGEISTTAYVDIQKIVRQTVKDIGYTRAKYGFDGETVAVLVAIDEQSPDIAQGVDAALEVRDQD 118          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_SYNR3 (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain RCC307) GN=metK PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.038e-31
Identity = 65/108 (60.19%), Postives = 81/108 (75.00%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADV-GLDADHCKVLVNIEQQSPDIAQGV 522
            M  ++FTSESV EGHPDK+CD+VSDAVLDA LAQDP S+VACET   T + ++ GE+TT A VD+  +VR     IG++SA   G DA+ C VLV ++QQSPDIAQGV
Sbjct:    1 MSRYVFTSESVTEGHPDKICDQVSDAVLDALLAQDPASRVACETVVNTGLCIITGEVTTTARVDFNTLVRGVIADIGYSSAKAGGFDANSCAVLVALDQQSPDIAQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_SHISS (S-adenosylmethionine synthetase OS=Shigella sonnei (strain Ss046) GN=metK PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.038e-31
Identity = 67/107 (62.62%), Postives = 81/107 (75.70%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            M   LFTSESV+EGHPDK+ D++SDAVLDA L QDP ++VACET  KT MV+V GEITT A VD E+I R+T R IG+  +D+G DA+ C VL  I +QSPDI QGV
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGV 107          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_SHIFL (S-adenosylmethionine synthetase OS=Shigella flexneri GN=metK PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 8.038e-31
Identity = 67/107 (62.62%), Postives = 81/107 (75.70%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            M   LFTSESV+EGHPDK+ D++SDAVLDA L QDP ++VACET  KT MV+V GEITT A VD E+I R+T R IG+  +D+G DA+ C VL  I +QSPDI QGV
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGV 107          
The following BLAST results are available for this feature:
BLAST of FC931074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_CLOTH3.608e-3157.89S-adenosylmethionine synthetase OS=Clostridium the... [more]
METK_CLOBA3.608e-3160.19S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_SYNS34.712e-3161.11S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_PSYIN4.712e-3163.55S-adenosylmethionine synthetase OS=Psychromonas in... [more]
METK_LEGPL4.712e-3158.93S-adenosylmethionine synthetase OS=Legionella pneu... [more]
METK_SODGM6.154e-3162.62S-adenosylmethionine synthetase OS=Sodalis glossin... [more]
METK_ENTFA6.154e-3157.76S-adenosylmethionine synthetase OS=Enterococcus fa... [more]
METK_SYNR38.038e-3160.19S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_SHISS8.038e-3162.62S-adenosylmethionine synthetase OS=Shigella sonnei... [more]
METK_SHIFL8.038e-3162.62S-adenosylmethionine synthetase OS=Shigella flexne... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34101B05EF PostHarvP1 Citrus clementina cDNA clone C34101B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931074 ID=FC931074; Name=FC931074; organism=Citrus clementina; type=EST; length=560bp
GAAAAAAAACGAGAGAACTGCGAGTCGAGCTGCCGTTTTAGCGCCTCGCT
CGCTTCTCGCAGCGTATGCATATCGTGTTTCTCTCGGTCTTCTGGGTACT
GACCATTTTCGTATATCACCACCTTCAATTCCATTTGTACTCGCACCACG
GCCTCCTGCAAAGCGAAAGCTGCAGCTTCAGGTTAAATCAAATTAAAGAA
AATGGAAACATTTCTTTTCACATCAGAATCAGTGAACGAGGGTCACCCGG
ACAAGCTGTGTGACCGAGTTTCGGACGCAGTACTGGACGCGTGTTTGGCT
CAGGATCCTGACAGCAAAGTTGCTTGTGAAACATGCACAAAGACCAACAT
GGTCATGGTTTTTGGAGAAATTACAACCAAGGCCAATGTGGATTACGAGA
AAATCGTGCGTGATACATGCAGATCGATTGGGTTCACATCGGCCGATGTG
GGGCTTGATGCTGATCACTGCAAAGTTCTTGTTAATATTGAGCAGCAGAG
CCCTGACATTGCTCAGGGTGTTCATGGGCATCTCACAAAGCGGCCTGAGG
AGATTGGTGC
back to top