FC931074

Overview
NameFC931074
Unique NameFC931074
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15265 contig Ccv1_Contig15265:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_CITK8 (S-adenosylmethionine synthetase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=metK PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.038e-31
Identity = 67/107 (62.62%), Postives = 81/107 (75.70%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            M   LFTSESV+EGHPDK+ D++SDAVLDA L QDP ++VACET  KT MV+V GEITT A VD E+I R+T R IG+  +D+G DA+ C VL  I +QSPDI QGV
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGV 107          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_ANADF (S-adenosylmethionine synthetase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=metK PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.038e-31
Identity = 62/104 (59.62%), Postives = 78/104 (75.00%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            +LFTSESV EGHPDK+ D++SDAVLDA LAQD   +VACET  KT  VM+ GEITT A ++Y K+ R+  + IG+ S D+G D + C VLV ++QQSPDI QGV
Sbjct:    6 YLFTSESVTEGHPDKMADQISDAVLDAVLAQDKKGRVACETLLKTGYVMIAGEITTTARIEYPKLAREVVKRIGYVSGDMGFDGNTCGVLVAVDQQSPDIGQGV 109          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_PROMM (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9313) GN=metK PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.050e-30
Identity = 64/109 (58.72%), Postives = 82/109 (75.23%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADV-GLDADHCKVLVNIEQQSPDIAQGVH 525
            M  ++FTSESV EGHPDK+CD+VSDAVLDA LAQDP S+VACET   T + ++ GE+T+ A VD+  +VR+  R IG++ A   G DA  C VLV ++QQSPDIAQGV+
Sbjct:    1 MSRYVFTSESVTEGHPDKICDQVSDAVLDALLAQDPSSRVACETVVNTGLCLITGEVTSNAQVDFIHLVRNVIREIGYSGARAGGFDATSCAVLVALDQQSPDIAQGVN 109          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_ERWT9 (S-adenosylmethionine synthetase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=metK PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.050e-30
Identity = 67/107 (62.62%), Postives = 80/107 (74.77%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            M   LFTSESV+EGHPDK+ D++SDAVLDA L QDP ++VACET  KT MV+V GEITT A VD E+I R T R IG+  +D+G DA+ C VL  I +QSPDI QGV
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRQTVRDIGYVHSDMGFDANSCAVLSAIGKQSPDINQGV 107          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_SYNP2 (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=metK PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.371e-30
Identity = 59/104 (56.73%), Postives = 82/104 (78.85%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            +LFTSESV EGHPDK+CD++SDA+LDA LA DP S+VA E  T T +V++ GE+TT+ANV++ ++ R   + IG+T+AD G  A+ C V+V +++QSPDIAQGV
Sbjct:    5 YLFTSESVTEGHPDKICDQISDAILDAVLAADPSSRVAAEVVTNTGLVLITGELTTQANVNFIQVARQKIKEIGYTNADNGFSANSCSVMVALDEQSPDIAQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_SERP5 (S-adenosylmethionine synthetase OS=Serratia proteamaculans (strain 568) GN=metK PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.371e-30
Identity = 67/107 (62.62%), Postives = 80/107 (74.77%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            M   LFTSESV+EGHPDK+ D++SDAVLDA L QDP ++VACET  KT MV+V GEITT A VD E+I R T R IG+  +D+G DA+ C VL  I +QSPDI QGV
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRKTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGV 107          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_PROMA (S-adenosylmethionine synthetase OS=Prochlorococcus marinus GN=metK PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.371e-30
Identity = 62/108 (57.41%), Postives = 83/108 (76.85%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADV-GLDADHCKVLVNIEQQSPDIAQGV 522
            M +F+FTSESV EGHPDK+CD+VSDA+LDA L QDP+S+VACET   T + ++ GE+T+KA VD+  +VR+  + IG+  A   G D++ C VLV ++QQSPDIAQGV
Sbjct:    1 MPSFVFTSESVTEGHPDKICDQVSDAILDALLDQDPNSRVACETVVNTGLCLITGEVTSKAKVDFINLVREVIKEIGYFGAKAGGFDSNSCSVLVALDQQSPDIAQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_NITEU (S-adenosylmethionine synthetase OS=Nitrosomonas europaea GN=metK PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.371e-30
Identity = 61/108 (56.48%), Postives = 80/108 (74.07%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 525
            M  +LFTSESV+EGHPDK+ D++SDA+LDA L QDP ++VACET   T ++++ GEITT A +DY  I R   R IG+TS+++G DA  C VL    +QSPDIAQGV+
Sbjct:    1 MSNYLFTSESVSEGHPDKVADQISDAILDAILQQDPHARVACETMCSTGLIVLSGEITTDATIDYNAIPRGIVREIGYTSSEIGFDASTCAVLTAFNKQSPDIAQGVN 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_VIBCM (S-adenosylmethionine synthetase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=metK PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.791e-30
Identity = 66/103 (64.08%), Postives = 78/103 (75.73%), Query Frame = 1
Query:  214 LFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            LFTSESV+EGHPDK+ D++SDAVLDA   QDP ++VACET  KT MVMV GEITT A VD E+I R T R IG+  +D+G DA+ C VL  I +QSPDI QGV
Sbjct:    6 LFTSESVSEGHPDKIADQISDAVLDAIFEQDPKARVACETYVKTGMVMVGGEITTSAWVDIEEITRQTVREIGYVHSDMGFDANSCAVLNTIGKQSPDINQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_VIBCH (S-adenosylmethionine synthetase OS=Vibrio cholerae GN=metK PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.791e-30
Identity = 66/103 (64.08%), Postives = 78/103 (75.73%), Query Frame = 1
Query:  214 LFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            LFTSESV+EGHPDK+ D++SDAVLDA   QDP ++VACET  KT MVMV GEITT A VD E+I R T R IG+  +D+G DA+ C VL  I +QSPDI QGV
Sbjct:    6 LFTSESVSEGHPDKIADQISDAVLDAIFEQDPKARVACETYVKTGMVMVGGEITTSAWVDIEEITRQTVREIGYVHSDMGFDANSCAVLNTIGKQSPDINQGV 108          
The following BLAST results are available for this feature:
BLAST of FC931074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_CITK88.038e-3162.62S-adenosylmethionine synthetase OS=Citrobacter kos... [more]
METK_ANADF8.038e-3159.62S-adenosylmethionine synthetase OS=Anaeromyxobacte... [more]
METK_PROMM1.050e-3058.72S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_ERWT91.050e-3062.62S-adenosylmethionine synthetase OS=Erwinia tasmani... [more]
METK_SYNP21.371e-3056.73S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_SERP51.371e-3062.62S-adenosylmethionine synthetase OS=Serratia protea... [more]
METK_PROMA1.371e-3057.41S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_NITEU1.371e-3056.48S-adenosylmethionine synthetase OS=Nitrosomonas eu... [more]
METK_VIBCM1.791e-3064.08S-adenosylmethionine synthetase OS=Vibrio cholerae... [more]
METK_VIBCH1.791e-3064.08S-adenosylmethionine synthetase OS=Vibrio cholerae... [more]

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Properties
Property NameValue
Genbank descriptionC34101B05EF PostHarvP1 Citrus clementina cDNA clone C34101B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931074 ID=FC931074; Name=FC931074; organism=Citrus clementina; type=EST; length=560bp
GAAAAAAAACGAGAGAACTGCGAGTCGAGCTGCCGTTTTAGCGCCTCGCT
CGCTTCTCGCAGCGTATGCATATCGTGTTTCTCTCGGTCTTCTGGGTACT
GACCATTTTCGTATATCACCACCTTCAATTCCATTTGTACTCGCACCACG
GCCTCCTGCAAAGCGAAAGCTGCAGCTTCAGGTTAAATCAAATTAAAGAA
AATGGAAACATTTCTTTTCACATCAGAATCAGTGAACGAGGGTCACCCGG
ACAAGCTGTGTGACCGAGTTTCGGACGCAGTACTGGACGCGTGTTTGGCT
CAGGATCCTGACAGCAAAGTTGCTTGTGAAACATGCACAAAGACCAACAT
GGTCATGGTTTTTGGAGAAATTACAACCAAGGCCAATGTGGATTACGAGA
AAATCGTGCGTGATACATGCAGATCGATTGGGTTCACATCGGCCGATGTG
GGGCTTGATGCTGATCACTGCAAAGTTCTTGTTAATATTGAGCAGCAGAG
CCCTGACATTGCTCAGGGTGTTCATGGGCATCTCACAAAGCGGCCTGAGG
AGATTGGTGC
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