FC931074

Overview
NameFC931074
Unique NameFC931074
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_CLOPS (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.989e-30
Identity = 63/113 (55.75%), Postives = 79/113 (69.91%), Query Frame = 1
Query:  214 LFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 552
            LFTSESV EGHPDK+CD++SDAVLDA  A+DP+++VACET   T +VMV GEITT   VD  KI R+T ++IG+  A  G D + C V+  I++QS DIA GV   L  R  E
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAIFAKDPNARVACETAVTTGLVMVMGEITTNCYVDIPKIARETIKNIGYDRAKYGFDCETCSVMTTIDEQSSDIAMGVDEALESRAGE 116          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_CLOP1 (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.989e-30
Identity = 63/113 (55.75%), Postives = 79/113 (69.91%), Query Frame = 1
Query:  214 LFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 552
            LFTSESV EGHPDK+CD++SDAVLDA  A+DP+++VACET   T +VMV GEITT   VD  KI R+T ++IG+  A  G D + C V+  I++QS DIA GV   L  R  E
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAIFAKDPNARVACETAVTTGLVMVMGEITTNCYVDIPKIARETIKNIGYDRAKYGFDCETCSVMTTIDEQSSDIAMGVDEALESRAGE 116          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_CLONN (S-adenosylmethionine synthetase OS=Clostridium novyi (strain NT) GN=metK PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.989e-30
Identity = 63/110 (57.27%), Postives = 77/110 (70.00%), Query Frame = 1
Query:  214 LFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 543
            LFTSESV EGHPDK+CD++SDA+LDA L  DP+ +VACET   T MVMV GEI+T   VD  K+VR+    IG+T A  G DA+ C VL +I++QS DIA GV   L  R
Sbjct:    4 LFTSESVTEGHPDKMCDQISDAILDAILKNDPNGRVACETAVTTGMVMVMGEISTNCYVDIPKVVREVISDIGYTRAKYGFDAETCSVLTSIDEQSQDIAMGVDEALESR 113          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_CLOCE (S-adenosylmethionine synthetase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=metK PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.989e-30
Identity = 64/114 (56.14%), Postives = 79/114 (69.30%), Query Frame = 1
Query:  214 LFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEI 555
            LFTSESV EGHPDK+CD++SDAVLDA   +DP ++VACET   T MVMV GEITT   VD  K+VR+T R IG+  A  G D D C V+ +I++QS DIA GV   L  +  E+
Sbjct:    5 LFTSESVTEGHPDKICDQISDAVLDAIYEKDPQARVACETAVTTGMVMVMGEITTNCYVDIPKVVRNTIREIGYDRAKYGFDCDTCAVMTSIDEQSSDIAMGVDKALEAKVGEM 118          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_CLOBK (S-adenosylmethionine synthetase OS=Clostridium botulinum (strain Okra / Type B1) GN=metK PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.989e-30
Identity = 64/114 (56.14%), Postives = 81/114 (71.05%), Query Frame = 1
Query:  214 LFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEI 555
            LFTSESV EGHPDK+CD++SDAVLDA L +DP+ +VACET   T MVMV GEI+TK  VD  K+VR+T R IG+  A  G D + C V+ +I++QS DIA GV   L  +  E+
Sbjct:    4 LFTSESVTEGHPDKICDQISDAVLDAILDKDPNGRVACETAVTTGMVMVMGEISTKCYVDIPKLVRETIRGIGYDRAKYGFDCETCSVITSIDEQSVDIAIGVDEALESKKGEM 117          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_BACP2 (S-adenosylmethionine synthetase OS=Bacillus pumilus (strain SAFR-032) GN=metK PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.989e-30
Identity = 63/110 (57.27%), Postives = 80/110 (72.73%), Query Frame = 1
Query:  214 LFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 543
            LFTSESV EGHPDK+CD++SD++LD  L +DP+++VACET   T +V+V GEITT   VD  K VRDT + IG+T A  G DA+ C VL +I++QS DIAQGV   L  R
Sbjct:    7 LFTSESVTEGHPDKICDQISDSILDEILKKDPNARVACETSVTTGLVLVSGEITTSTYVDIPKTVRDTIKEIGYTRAKYGFDAETCAVLTSIDEQSADIAQGVDKALEAR 116          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_YERE8 (S-adenosylmethionine synthetase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=metK PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.210e-30
Identity = 65/107 (60.75%), Postives = 81/107 (75.70%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            M   LFTSESV+EGHPDK+ D++SDAVLDA L QDP ++VACET  KT MV+V GE+TT A VD E+I R T R IG+ ++++G DA+ C VL  I +QSPDI QGV
Sbjct:    1 MAKHLFTSESVSEGHPDKVADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEVTTNAWVDIEEITRRTVREIGYVNSEMGFDANSCAVLSAIGKQSPDINQGV 107          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_PELCD (S-adenosylmethionine synthetase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=metK PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.210e-30
Identity = 62/107 (57.94%), Postives = 80/107 (74.77%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            M  FLFTSESV+EGHPDK+ D+VSDA+LDA L QD  S+VACET   T M ++ GEITT A V+Y K+VR+  R IG+  + +G D + C VL +I++QSPDI+QGV
Sbjct:    3 MTDFLFTSESVSEGHPDKVADQVSDAILDAILDQDRQSRVACETMVTTGMAVIAGEITTNARVEYPKVVREVIRDIGYNDSAMGFDWETCAVLTSIDRQSPDISQGV 109          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_LARHH (S-adenosylmethionine synthetase OS=Laribacter hongkongensis (strain HLHK9) GN=metK PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.210e-30
Identity = 61/108 (56.48%), Postives = 82/108 (75.93%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 525
            M  +LFTSESV+EGHPDK+ D++SDA+LDA L QD  ++VA ET   T +V++ GEITT ANVDY  + R+T + IG+ ++D+G DA  C VLV  ++QSPDIAQGV+
Sbjct:    1 MSEYLFTSESVSEGHPDKVADQISDAILDAILTQDKHARVAAETLVNTGLVVLAGEITTHANVDYIHVARETIKRIGYNTSDLGFDAKGCAVLVGYDKQSPDIAQGVN 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_HERAR (S-adenosylmethionine synthetase OS=Herminiimonas arsenicoxydans GN=metK PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.210e-30
Identity = 62/104 (59.62%), Postives = 80/104 (76.92%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            FLFTSESV+EGHPDK+ D++SDA+LDA   QDP ++VA ET   T +V++ GEITT ANVDY ++ RDT + IG+ +AD G+D   C VLV  ++QSPDIAQGV
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFQQDPKARVAAETLCNTGLVVLAGEITTFANVDYIEVARDTIKRIGYDNADYGIDYKSCSVLVAYDKQSPDIAQGV 108          
The following BLAST results are available for this feature:
BLAST of FC931074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_CLOPS3.989e-3055.75S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_CLOP13.989e-3055.75S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_CLONN3.989e-3057.27S-adenosylmethionine synthetase OS=Clostridium nov... [more]
METK_CLOCE3.989e-3056.14S-adenosylmethionine synthetase OS=Clostridium cel... [more]
METK_CLOBK3.989e-3056.14S-adenosylmethionine synthetase OS=Clostridium bot... [more]
METK_BACP23.989e-3057.27S-adenosylmethionine synthetase OS=Bacillus pumilu... [more]
METK_YERE85.210e-3060.75S-adenosylmethionine synthetase OS=Yersinia entero... [more]
METK_PELCD5.210e-3057.94S-adenosylmethionine synthetase OS=Pelobacter carb... [more]
METK_LARHH5.210e-3056.48S-adenosylmethionine synthetase OS=Laribacter hong... [more]
METK_HERAR5.210e-3059.62S-adenosylmethionine synthetase OS=Herminiimonas a... [more]

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Properties
Property NameValue
Genbank descriptionC34101B05EF PostHarvP1 Citrus clementina cDNA clone C34101B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931074 ID=FC931074; Name=FC931074; organism=Citrus clementina; type=EST; length=560bp
GAAAAAAAACGAGAGAACTGCGAGTCGAGCTGCCGTTTTAGCGCCTCGCT
CGCTTCTCGCAGCGTATGCATATCGTGTTTCTCTCGGTCTTCTGGGTACT
GACCATTTTCGTATATCACCACCTTCAATTCCATTTGTACTCGCACCACG
GCCTCCTGCAAAGCGAAAGCTGCAGCTTCAGGTTAAATCAAATTAAAGAA
AATGGAAACATTTCTTTTCACATCAGAATCAGTGAACGAGGGTCACCCGG
ACAAGCTGTGTGACCGAGTTTCGGACGCAGTACTGGACGCGTGTTTGGCT
CAGGATCCTGACAGCAAAGTTGCTTGTGAAACATGCACAAAGACCAACAT
GGTCATGGTTTTTGGAGAAATTACAACCAAGGCCAATGTGGATTACGAGA
AAATCGTGCGTGATACATGCAGATCGATTGGGTTCACATCGGCCGATGTG
GGGCTTGATGCTGATCACTGCAAAGTTCTTGTTAATATTGAGCAGCAGAG
CCCTGACATTGCTCAGGGTGTTCATGGGCATCTCACAAAGCGGCCTGAGG
AGATTGGTGC
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