FC931074

Overview
NameFC931074
Unique NameFC931074
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15265 contig Ccv1_Contig15265:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_ANAVT (S-adenosylmethionine synthetase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=metK PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.411e-29
Identity = 59/105 (56.19%), Postives = 76/105 (72.38%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 525
            +LFTSESV EGHPDK+CD++SD +LD  L QDP S+VA E    T +V++ GEITTKANV+Y  I R     IG+T+AD G  A    V+V +++QSPDIAQGV+
Sbjct:    5 YLFTSESVTEGHPDKICDQISDTILDTLLTQDPTSRVAAEVVVNTGLVLITGEITTKANVNYANIARQKIAEIGYTNADNGFSASSTSVIVALDEQSPDIAQGVN 109          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_ACIAD (S-adenosylmethionine synthetase OS=Acinetobacter sp. (strain ADP1) GN=metK PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.411e-29
Identity = 63/118 (53.39%), Postives = 85/118 (72.03%), Query Frame = 1
Query:  205 ETFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 558
            E  +FTSESV+EGHPDK+ D++SDA+LDA L +DP ++VACET  KT  V++ GEITT ANVD+E IVR T   IG+  +D+G D   C ++  I +QSP+IAQGV     ++PE+ G
Sbjct:    3 EYAVFTSESVSEGHPDKMADQISDAILDAILKEDPYARVACETLVKTGAVVLAGEITTTANVDFEAIVRQTVNGIGYHHSDLGFDGSTCAIINMIGKQSPEIAQGVD---RQKPEDQG 117          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_ACAM1 (S-adenosylmethionine synthetase OS=Acaryochloris marina (strain MBIC 11017) GN=metK PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.411e-29
Identity = 61/114 (53.51%), Postives = 81/114 (71.05%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEE 552
            +LFTSESV EGHPDK+CD++SD +LDA L+QDP S+VA E    T +V++ GEITTKA V++  +VR     IG+T +D G  A+ C VLV +++QSPDIAQGV      R E+
Sbjct:    5 YLFTSESVTEGHPDKVCDQISDTILDALLSQDPASRVAAEVVVNTGLVLLTGEITTKAQVNFVDLVRQKITEIGYTDSDNGFAANSCSVLVALDEQSPDIAQGVDSAQETREEK 118          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_PSYCK (S-adenosylmethionine synthetase OS=Psychrobacter cryohalolentis (strain K5) GN=metK PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.760e-29
Identity = 64/115 (55.65%), Postives = 83/115 (72.17%), Query Frame = 1
Query:  214 LFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 558
            LFTSESV+EGHPDK+ D++SDA+LDA L QD  ++VACET  KT  V++ GEITT AN+D E+IVRDT   IG+  +D+G D + C V+  + +QSP+IAQGV       PEE G
Sbjct:    6 LFTSESVSEGHPDKMADQISDAILDAILRQDLHARVACETLVKTGAVVLAGEITTTANIDVERIVRDTVNGIGYHHSDLGFDGETCAVINMLGKQSPEIAQGVD---RADPEEQG 117          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_PSYA2 (S-adenosylmethionine synthetase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=metK PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.760e-29
Identity = 64/115 (55.65%), Postives = 83/115 (72.17%), Query Frame = 1
Query:  214 LFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 558
            LFTSESV+EGHPDK+ D++SDA+LDA L QD  ++VACET  KT  V++ GEITT AN+D E+IVRDT   IG+  +D+G D + C V+  + +QSP+IAQGV       PEE G
Sbjct:    6 LFTSESVSEGHPDKMADQISDAILDAILRQDLHARVACETLVKTGAVILAGEITTTANIDVERIVRDTVNGIGYHHSDLGFDGETCAVINMLGKQSPEIAQGVD---RADPEEQG 117          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_BACA2 (S-adenosylmethionine synthetase OS=Bacillus amyloliquefaciens (strain FZB42) GN=metK PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.760e-29
Identity = 61/110 (55.45%), Postives = 78/110 (70.91%), Query Frame = 1
Query:  214 LFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 543
            LFTSESV EGHPDK+CD++SD++LD  L  DP+++VACET   T +V+V GEITT   VD  K VR+T + IG+T A  G DA+ C VL +I++QS DIA GV   L  R
Sbjct:    7 LFTSESVTEGHPDKICDQISDSILDEILKNDPNARVACETSVTTGLVLVSGEITTSTYVDIPKTVRETIKEIGYTRAKYGFDAETCAVLTSIDEQSADIAMGVDQALEAR 116          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_XANOR (S-adenosylmethionine synthetase OS=Xanthomonas oryzae pv. oryzae GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 558
            M ++LFTSESV+EGHPDK+ D++SDAVLDA LAQD  ++VACET  KT + +V GE+TT A +D E + R     IG+ S+DVG D + C VL  I +QSPDI QGV     K PE+ G
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDAILAQDKRARVACETMVKTGVAIVAGEVTTSAWIDLEALTRKVILDIGYNSSDVGFDGETCGVLNLIGKQSPDINQGVD---RKNPEQQG 116          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_XANOP (S-adenosylmethionine synthetase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 558
            M ++LFTSESV+EGHPDK+ D++SDAVLDA LAQD  ++VACET  KT + +V GE+TT A +D E + R     IG+ S+DVG D + C VL  I +QSPDI QGV     K PE+ G
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDAILAQDKRARVACETMVKTGVAIVAGEVTTSAWIDLEALTRKVILDIGYNSSDVGFDGETCGVLNLIGKQSPDINQGVD---RKNPEQQG 116          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_XANOM (S-adenosylmethionine synthetase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 558
            M ++LFTSESV+EGHPDK+ D++SDAVLDA LAQD  ++VACET  KT + +V GE+TT A +D E + R     IG+ S+DVG D + C VL  I +QSPDI QGV     K PE+ G
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDAILAQDKRARVACETMVKTGVAIVAGEVTTSAWIDLEALTRKVILDIGYNSSDVGFDGETCGVLNLIGKQSPDINQGVD---RKNPEQQG 116          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_XANCP (S-adenosylmethionine synthetase OS=Xanthomonas campestris pv. campestris GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 65/119 (54.62%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 558
            M ++LFTSESV+EGHPDK+ D++SDAVLDA LAQD  ++VACET  KT + +V GE+TT A +D E + R     IG+ S+DVG D + C VL  I +QSPDI QGV     K PE+ G
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDAILAQDKRARVACETMVKTGVAIVAGEVTTSAWIDLEALTRKVILDIGYNSSDVGFDGETCGVLNLIGKQSPDINQGVD---RKNPEQQG 116          
The following BLAST results are available for this feature:
BLAST of FC931074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_ANAVT4.411e-2956.19S-adenosylmethionine synthetase OS=Anabaena variab... [more]
METK_ACIAD4.411e-2953.39S-adenosylmethionine synthetase OS=Acinetobacter s... [more]
METK_ACAM14.411e-2953.51S-adenosylmethionine synthetase OS=Acaryochloris m... [more]
METK_PSYCK5.760e-2955.65S-adenosylmethionine synthetase OS=Psychrobacter c... [more]
METK_PSYA25.760e-2955.65S-adenosylmethionine synthetase OS=Psychrobacter a... [more]
METK_BACA25.760e-2955.45S-adenosylmethionine synthetase OS=Bacillus amylol... [more]
METK_XANOR7.523e-2954.62S-adenosylmethionine synthetase OS=Xanthomonas ory... [more]
METK_XANOP7.523e-2954.62S-adenosylmethionine synthetase OS=Xanthomonas ory... [more]
METK_XANOM7.523e-2954.62S-adenosylmethionine synthetase OS=Xanthomonas ory... [more]
METK_XANCP7.523e-2954.62S-adenosylmethionine synthetase OS=Xanthomonas cam... [more]

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Properties
Property NameValue
Genbank descriptionC34101B05EF PostHarvP1 Citrus clementina cDNA clone C34101B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931074 ID=FC931074; Name=FC931074; organism=Citrus clementina; type=EST; length=560bp
GAAAAAAAACGAGAGAACTGCGAGTCGAGCTGCCGTTTTAGCGCCTCGCT
CGCTTCTCGCAGCGTATGCATATCGTGTTTCTCTCGGTCTTCTGGGTACT
GACCATTTTCGTATATCACCACCTTCAATTCCATTTGTACTCGCACCACG
GCCTCCTGCAAAGCGAAAGCTGCAGCTTCAGGTTAAATCAAATTAAAGAA
AATGGAAACATTTCTTTTCACATCAGAATCAGTGAACGAGGGTCACCCGG
ACAAGCTGTGTGACCGAGTTTCGGACGCAGTACTGGACGCGTGTTTGGCT
CAGGATCCTGACAGCAAAGTTGCTTGTGAAACATGCACAAAGACCAACAT
GGTCATGGTTTTTGGAGAAATTACAACCAAGGCCAATGTGGATTACGAGA
AAATCGTGCGTGATACATGCAGATCGATTGGGTTCACATCGGCCGATGTG
GGGCTTGATGCTGATCACTGCAAAGTTCTTGTTAATATTGAGCAGCAGAG
CCCTGACATTGCTCAGGGTGTTCATGGGCATCTCACAAAGCGGCCTGAGG
AGATTGGTGC
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