FC931074

Overview
NameFC931074
Unique NameFC931074
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15265 contig Ccv1_Contig15265:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_BURA4 (S-adenosylmethionine synthetase OS=Burkholderia ambifaria (strain MC40-6) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 61/104 (58.65%), Postives = 79/104 (75.96%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            +LFTSESV+EGHPDK+ D++SDA+LDA L QD  S+VA ET   T +V++ GEITT AN+DY +I RDT + IG+ + D G+D   C VLV  ++QSPDIAQGV
Sbjct:    5 YLFTSESVSEGHPDKVADQISDAILDAILEQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_BACSU (S-adenosylmethionine synthetase OS=Bacillus subtilis GN=metK PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 61/110 (55.45%), Postives = 78/110 (70.91%), Query Frame = 1
Query:  214 LFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 543
            LFTSESV EGHPDK+CD++SD++LD  L +DP+++VACET   T +V+V GEITT   VD  K VR T + IG+T A  G DA+ C VL +I++QS DIA GV   L  R
Sbjct:    7 LFTSESVTEGHPDKICDQISDSILDEILKKDPNARVACETSVTTGLVLVSGEITTSTYVDIPKTVRQTIKEIGYTRAKYGFDAETCAVLTSIDEQSADIAMGVDQALEAR 116          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_AZOSB (S-adenosylmethionine synthetase OS=Azoarcus sp. (strain BH72) GN=metK PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.523e-29
Identity = 59/105 (56.19%), Postives = 79/105 (75.24%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 525
            FLFTSESV+EGHPDK+ D++SD VLDA LA+DP ++VACET   T +V++ GEITT A+ +Y +I +D  R IG+ ++D+G D   C VL  I +QS DIAQGV+
Sbjct:    5 FLFTSESVSEGHPDKVADQISDGVLDAILAEDPKARVACETLVSTGLVVISGEITTSAHPNYREIAQDVVRRIGYDNSDIGFDYKSCAVLAAINRQSSDIAQGVN 109          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_NOSP7 (S-adenosylmethionine synthetase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=metK PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.826e-29
Identity = 58/105 (55.24%), Postives = 78/105 (74.29%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 525
            +LFTSESV EGHPDK+CD++SD +LDA L QDP S+VA E    T +V++ GEITTKANV++  + R     IG+T+AD G  A+   VL+ +++QSPDIAQGV+
Sbjct:    5 YLFTSESVTEGHPDKICDQISDTILDALLTQDPSSRVAAEVVVNTGLVLITGEITTKANVNFVNLARKKIAEIGYTNADNGFSANSTSVLLALDEQSPDIAQGVN 109          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_CLAM3 (S-adenosylmethionine synthetase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=metK PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.826e-29
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = 1
Query:  214 LFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            LFTSESV EGHPDK+CD++SD++LDA L QDP S+ A ET   T +V V GE+TT   VD  +IVRD  R IG+ S++VG D  +C V V+I  QSPDIAQGV
Sbjct:    6 LFTSESVTEGHPDKICDQISDSILDALLTQDPTSRAAVETLVTTGLVHVAGEVTTSGYVDIPQIVRDRIRDIGYDSSEVGFDGSNCGVTVSIGAQSPDIAQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_BURXL (S-adenosylmethionine synthetase OS=Burkholderia xenovorans (strain LB400) GN=metK PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.826e-29
Identity = 61/104 (58.65%), Postives = 80/104 (76.92%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            +LFTSESV+EGHPDK+ D++SDA+LDA LAQD  S+VA ET   T +V++ GEITT ANVDY ++ R+T + IG+ + D G+D   C VLV  ++QSPDIAQGV
Sbjct:    5 YLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANVDYIQVARNTIKRIGYDNTDYGIDYRGCAVLVAYDKQSPDIAQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_BURPP (S-adenosylmethionine synthetase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=metK PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.826e-29
Identity = 61/104 (58.65%), Postives = 80/104 (76.92%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            +LFTSESV+EGHPDK+ D++SDA+LDA LAQD  S+VA ET   T +V++ GEITT ANVDY ++ R+T + IG+ + D G+D   C VLV  ++QSPDIAQGV
Sbjct:    5 YLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANVDYIQVARNTIKRIGYDNTDYGIDYRGCAVLVAYDKQSPDIAQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_VARPS (S-adenosylmethionine synthetase OS=Variovorax paradoxus (strain S110) GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.283e-28
Identity = 60/104 (57.69%), Postives = 79/104 (75.96%), Query Frame = 1
Query:  211 FLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 522
            FLFTSESV+EGHPDK+ D++SDA+LDA   QDP S+VA ET T T +V++ GEITT A+VDY ++ RDT + IG+ + D G+D   C V+V  ++QS DIAQGV
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFEQDPRSRVAAETLTNTGLVVLAGEITTNAHVDYIQVARDTIKRIGYDNTDYGIDYKGCAVMVCYDKQSNDIAQGV 108          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_STRM5 (S-adenosylmethionine synthetase OS=Stenotrophomonas maltophilia (strain R551-3) GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.283e-28
Identity = 66/119 (55.46%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  202 METFLFTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 558
            M ++LFTSESV+EGHPDK+ D++SDAVLDA L QD  ++VACET  KT + +V GEITT A +D E + R     IG+ S+DVG D   C VL  I +QSP IAQGV     K+PEE+G
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILTQDQRARVACETMVKTGVAIVAGEITTSAWIDLEALTRKVIVDIGYDSSDVGFDGATCGVLNLIGKQSPHIAQGVD---RKKPEEMG 116          
BLAST of FC931074 vs. ExPASy Swiss-Prot
Match: METK_ROSS1 (S-adenosylmethionine synthetase OS=Roseiflexus sp. (strain RS-1) GN=metK PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.283e-28
Identity = 64/110 (58.18%), Postives = 78/110 (70.91%), Query Frame = 1
Query:  217 FTSESVNEGHPDKLCDRVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEIT-TKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 543
            FTSESV EGHPDK+CD+VSDAVLDA L  DP ++VACET T T +++V GE+T  +  +  E+IVR T + IG+T A  G DAD C V+V I  QSPDIAQGV   L  R
Sbjct:   13 FTSESVTEGHPDKICDQVSDAVLDAFLTHDPRARVACETATTTGLIVVIGEVTYEQGYIPIEEIVRKTVKDIGYTDASYGFDADTCGVMVAIHGQSPDIAQGVDRALEVR 122          
The following BLAST results are available for this feature:
BLAST of FC931074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_BURA47.523e-2958.65S-adenosylmethionine synthetase OS=Burkholderia am... [more]
METK_BACSU7.523e-2955.45S-adenosylmethionine synthetase OS=Bacillus subtil... [more]
METK_AZOSB7.523e-2956.19S-adenosylmethionine synthetase OS=Azoarcus sp. (s... [more]
METK_NOSP79.826e-2955.24S-adenosylmethionine synthetase OS=Nostoc punctifo... [more]
METK_CLAM39.826e-2959.22S-adenosylmethionine synthetase OS=Clavibacter mic... [more]
METK_BURXL9.826e-2958.65S-adenosylmethionine synthetase OS=Burkholderia xe... [more]
METK_BURPP9.826e-2958.65S-adenosylmethionine synthetase OS=Burkholderia ph... [more]
METK_VARPS1.283e-2857.69S-adenosylmethionine synthetase OS=Variovorax para... [more]
METK_STRM51.283e-2855.46S-adenosylmethionine synthetase OS=Stenotrophomona... [more]
METK_ROSS11.283e-2858.18S-adenosylmethionine synthetase OS=Roseiflexus sp.... [more]

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Properties
Property NameValue
Genbank descriptionC34101B05EF PostHarvP1 Citrus clementina cDNA clone C34101B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931074 ID=FC931074; Name=FC931074; organism=Citrus clementina; type=EST; length=560bp
GAAAAAAAACGAGAGAACTGCGAGTCGAGCTGCCGTTTTAGCGCCTCGCT
CGCTTCTCGCAGCGTATGCATATCGTGTTTCTCTCGGTCTTCTGGGTACT
GACCATTTTCGTATATCACCACCTTCAATTCCATTTGTACTCGCACCACG
GCCTCCTGCAAAGCGAAAGCTGCAGCTTCAGGTTAAATCAAATTAAAGAA
AATGGAAACATTTCTTTTCACATCAGAATCAGTGAACGAGGGTCACCCGG
ACAAGCTGTGTGACCGAGTTTCGGACGCAGTACTGGACGCGTGTTTGGCT
CAGGATCCTGACAGCAAAGTTGCTTGTGAAACATGCACAAAGACCAACAT
GGTCATGGTTTTTGGAGAAATTACAACCAAGGCCAATGTGGATTACGAGA
AAATCGTGCGTGATACATGCAGATCGATTGGGTTCACATCGGCCGATGTG
GGGCTTGATGCTGATCACTGCAAAGTTCTTGTTAATATTGAGCAGCAGAG
CCCTGACATTGCTCAGGGTGTTCATGGGCATCTCACAAAGCGGCCTGAGG
AGATTGGTGC
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