FC931090

Overview
NameFC931090
Unique NameFC931090
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15271 contig Ccv1_Contig15271:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_SACD2 (3-ketoacyl-CoA thiolase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=fadA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.212e-13
Identity = 43/119 (36.13%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            DVVIV   RT + ++K G +++  ADDL A ++  ++ +   L+P+++ D++ G V+  G       R     AG P TVP +TVNR C S + A+   A  I AGL D+ +  G+E M
Sbjct:    7 DVVIVDYARTPMGRSKNGCYRNVRADDLSADLITGLLARNAALDPAQIDDMIWGCVMQRGEQGFNVARNILLRAGLPHTVPAQTVNRLCGSSMSALHTAAANIMAGLGDVYLVGGVEHM 125          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: THIL_MYCLE (Probable acetyl-CoA acetyltransferase OS=Mycobacterium leprae GN=fadA4 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.583e-13
Identity = 49/117 (41.88%), Postives = 65/117 (55.56%), Query Frame = 3
Query:  327 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 677
            VIV   RT I K   G  KD  A DL A  + A ++K  + PS V  +++G VL  G+ + M  R AA  AG    VP  T+N+ C SGL A+A     I+AG +D+ +A G ESMT
Sbjct:    5 VIVTGARTPIGKLM-GSLKDFSASDLGAITIAAALKKANVAPSIVQYVIIGQVLTAGAGQ-MPARQAAVAAGIGWDVPALTINKMCLSGLDAIALADQLIRAGEFDVVVAGGQESMT 119          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: ATOB_PSEAE (Acetyl-CoA acetyltransferase OS=Pseudomonas aeruginosa GN=atoB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.583e-13
Identity = 54/144 (37.50%), Postives = 84/144 (58.33%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLAD----DLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQLTPKWRSLLKLG 740
            DVVIVAA RTA+     G F+ +LA     +L A V++ ++E+T L+  +V ++++G VL  GS +    R AA  AG P  VP  T+N+ C SGL+A+   A AI+ G  ++ +A G E+M     S+   + P  R+ L++G
Sbjct:    3 DVVIVAATRTAV-----GSFQGSLAGIPAPELGAAVIRRLLEQTGLDAGQVDEVILGQVLTAGSGQN-PARQAAIKAGLPVGVPAMTLNKVCGSGLKALHLGAQAIRCGDAEVIVAGGQENM-----SLAPYVMPGARTGLRMG 135          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            DVVIV   RT + ++K G F++  A+DL A ++K+++ +   L+P+E+ DI  G V           R AA  AG P+ V   TVNR C S +QA+ D + AI+ G  DI I  G+E M
Sbjct:    3 DVVIVDCIRTPMGRSKGGAFRNVRAEDLSAHLMKSILLRNPNLDPNEIEDIYWGCVQQTLEQGFNIARNAALLAGIPKQVGAVTVNRLCGSSMQALHDASRAIQVGDGDIFIIGGVEHM 121          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_ALISL (3-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida (strain LFI1238) GN=fadA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 44/119 (36.97%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            +VVIV   RT + ++K G F+ T A+DL A ++K ++E+   ++P+++ DI  G V           R A+  AG P+++   TVNR C S +QA+ D + AI  G  DI I  G+E M
Sbjct:    3 NVVIVDCIRTPMGRSKNGVFRHTRAEDLSAHLMKGLLERNPNVDPNQIEDIYWGCVQQTLEQGFNIARNASLLAGLPKSIAATTVNRLCGSSMQALHDASRAIMVGDADICIIGGVEHM 121          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_AERS4 (3-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (strain A449) GN=fadA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.340e-12
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            DVVIV   RT + ++K G F++  A+DL A ++ +++ +   L+P+E+ DI  G V           R AA  AG P+ V   TVNR C S +QA+ D + AI+ G  DI I  G+E M
Sbjct:    3 DVVIVDCIRTPMGRSKGGAFRNVRAEDLSAHLMSSILLRNPNLDPNEIEDIYWGCVQQTLEQGFNIARNAALLAGIPKQVGAVTVNRLCGSSMQALHDASRAIQVGDGDIFIIGGVEHM 121          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_VIBVY (3-ketoacyl-CoA thiolase OS=Vibrio vulnificus (strain YJ016) GN=fadA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.750e-12
Identity = 46/119 (38.66%), Postives = 66/119 (55.46%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            +VVIV   RT + ++K G F+ T A+DL A ++K ++ +  ++NPSE+ DI  G V           R AA  AG P  +   TVNR C S +QA+ D A AI  G  +I +  G+E M
Sbjct:    3 NVVIVDCLRTPMGRSKGGAFRHTRAEDLSAHLMKGILARNPQVNPSEIEDIYWGCVQQTLEQGFNVARNAALLAGLPIEIGAVTVNRLCGSSMQALHDGARAIMTGDAEICLIGGVEHM 121          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_VIBVU (3-ketoacyl-CoA thiolase OS=Vibrio vulnificus GN=fadA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.750e-12
Identity = 46/119 (38.66%), Postives = 66/119 (55.46%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            +VVIV   RT + ++K G F+ T A+DL A ++K ++ +  ++NPSE+ DI  G V           R AA  AG P  +   TVNR C S +QA+ D A AI  G  +I +  G+E M
Sbjct:    3 NVVIVDCLRTPMGRSKGGAFRHTRAEDLSAHLMKGILARNPQVNPSEIEDIYWGCVQQTLEQGFNVARNAALLAGLPIEIGAVTVNRLCGSSMQALHDGARAIMTGDAEICLIGGVEHM 121          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: ATOB_ECOLI (Acetyl-CoA acetyltransferase OS=Escherichia coli (strain K12) GN=atoB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.750e-12
Identity = 48/118 (40.68%), Postives = 70/118 (59.32%), Query Frame = 3
Query:  327 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV 680
            VIV+A RTAI  +  G    T A DL A V+KA IE+ +++   V ++++G VL  G  +    R A   +G  ETV   TVN+ C SGL++VA  A AI+AG     +A G+E+M++
Sbjct:    5 VIVSAVRTAI-GSFNGSLASTSAIDLGATVIKAAIERAKIDSQHVDEVIMGNVLQAGLGQN-PARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSL 120          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: THIL_YARLI (Acetyl-CoA acetyltransferase OS=Yarrowia lipolytica GN=PAT1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.286e-12
Identity = 44/116 (37.93%), Postives = 65/116 (56.03%), Query Frame = 3
Query:  330 IVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 677
            IV A RT + K   G  K   A DL     KA ++++++   ++ + + G VL   S +A   R      GFPE+V   T+N+ CSSGL+ VA  A AIKAG  ++ +A G+ESM+
Sbjct:   13 IVGAARTPVGKFN-GALKSVSAIDLGITAAKAAVQRSKVPADQIDEFLFGQVLTANSGQA-PARQVVIKGGFPESVEATTINKVCSSGLKTVALAAQAIKAGDRNVIVAGGMESMS 126          
The following BLAST results are available for this feature:
BLAST of FC931090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
FADA_SACD21.212e-1336.133-ketoacyl-CoA thiolase OS=Saccharophagus degradan... [more]
THIL_MYCLE1.583e-1341.88Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
ATOB_PSEAE1.583e-1337.50Acetyl-CoA acetyltransferase OS=Pseudomonas aerugi... [more]
FADA_AERHH3.526e-1339.503-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]
FADA_ALISL1.026e-1236.973-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida ... [more]
FADA_AERS41.340e-1238.663-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (... [more]
FADA_VIBVY1.750e-1238.663-ketoacyl-CoA thiolase OS=Vibrio vulnificus (stra... [more]
FADA_VIBVU1.750e-1238.663-ketoacyl-CoA thiolase OS=Vibrio vulnificus GN=fa... [more]
ATOB_ECOLI1.750e-1240.68Acetyl-CoA acetyltransferase OS=Escherichia coli (... [more]
THIL_YARLI2.286e-1237.93Acetyl-CoA acetyltransferase OS=Yarrowia lipolytic... [more]

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Properties
Property NameValue
Genbank descriptionC34101C11EF PostHarvP1 Citrus clementina cDNA clone C34101C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931090 ID=FC931090; Name=FC931090; organism=Citrus clementina; type=EST; length=757bp
GAGTGTCCTATAATTTCCCAAGTATATTTCAGGGGGCCAAAAAAAAAAAA
AAAAAAAAAAACAGGTACTATAACTTCNGGAGTAGATTCAAACCAGGAAA
GAGTAAACAAGTCATCCCTGGTTCTCGATTCATCAGAACTCAAAAGCTTT
CCATTGAAACCTGAGAGTGAGAGATGGAGAAAGCTCTTCACAGACAGAGA
ATTCTGCTTCAACATCTTCAACCTTCTTCTTCCCAAACCAGTGACTCGCC
GGCTATTTCTGCTTCGATTTGTTCGGCTGGTGAAGCTGCAGGATACCATA
GGAAGCCTGCTTTCGATGATGATGTCGTAATTGTGGCTGCATACCGTACT
GCAATTTGCAAGGCGAAACGTGGAGGCTTCAAGGATACTCTTGCCGATGA
TCTGCTTGCACCTGTTCTAAAGGCAGTGATAGAGAAAACGAGGTTGAATC
CCAGTGAAGTAGGGGATATAGTTGTTGGTACAGTCTTGGCACCTGGCTCA
ACAAGAGCCATGGAGTGTAGGATGGCAGCGTTCTATGCTGGTTTCCCTGA
AACGGTGCCCCTCAGAACTGTCAACAGGCAGTGTTCATCTGGCTTGCAGG
CGGTTGCTGATGTTGCAACAGCTATAAAAGCTGGATTGTATGACATTGGT
ATTGCTGCTGGATTGGAAAGCATGACTGTGAATTCTATTAGCGTTGTTGG
CCAGTTAACCCCCAAGTGGAGATCTTTACTCAAGCTCGGGACTGTCTGCT
TCCTATG
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