FC931090

Overview
NameFC931090
Unique NameFC931090
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15271 contig Ccv1_Contig15271:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_YERPS (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis GN=fadA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12
Identity = 46/120 (38.33%), Postives = 66/120 (55.00%), Query Frame = 3
Query:  318 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            ++VVI+ A RT + ++K G F+   A+DL A +++AVI +   LN +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   I +  G+E M
Sbjct:    2 ENVVIIDAVRTPMGRSKGGAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHM 121          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_YERPP (3-ketoacyl-CoA thiolase OS=Yersinia pestis (strain Pestoides F) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12
Identity = 46/120 (38.33%), Postives = 66/120 (55.00%), Query Frame = 3
Query:  318 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            ++VVI+ A RT + ++K G F+   A+DL A +++AVI +   LN +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   I +  G+E M
Sbjct:    2 ENVVIIDAVRTPMGRSKGGAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHM 121          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_YERPN (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12
Identity = 46/120 (38.33%), Postives = 66/120 (55.00%), Query Frame = 3
Query:  318 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            ++VVI+ A RT + ++K G F+   A+DL A +++AVI +   LN +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   I +  G+E M
Sbjct:    2 ENVVIIDAVRTPMGRSKGGAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHM 121          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_YERPE (3-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12
Identity = 46/120 (38.33%), Postives = 66/120 (55.00%), Query Frame = 3
Query:  318 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            ++VVI+ A RT + ++K G F+   A+DL A +++AVI +   LN +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   I +  G+E M
Sbjct:    2 ENVVIIDAVRTPMGRSKGGAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHM 121          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_YERPA (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12
Identity = 46/120 (38.33%), Postives = 66/120 (55.00%), Query Frame = 3
Query:  318 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            ++VVI+ A RT + ++K G F+   A+DL A +++AVI +   LN +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   I +  G+E M
Sbjct:    2 ENVVIIDAVRTPMGRSKGGAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHM 121          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_YERP3 (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12
Identity = 46/120 (38.33%), Postives = 66/120 (55.00%), Query Frame = 3
Query:  318 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            ++VVI+ A RT + ++K G F+   A+DL A +++AVI +   LN +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   I +  G+E M
Sbjct:    2 ENVVIIDAVRTPMGRSKGGAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHM 121          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_IDILO (3-ketoacyl-CoA thiolase OS=Idiomarina loihiensis GN=fadA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            D+VIV   RT + ++K G F+ T A+DL A ++K ++E+   ++P E+ DI  G V           R +A  AG P  V   TVNR C S +QA+ D   AI  G  DI +A G+E M
Sbjct:    3 DIVIVDCIRTPMGRSKNGVFRHTRAEDLSAALMKGLLERNPEVDPEELEDIYWGCVQQTLEQGFNIARNSALIAGIPHKVAGVTVNRLCGSSMQALHDATRAIMNGDGDIFMAGGVEHM 121          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: THIL_CHRVI (Acetyl-CoA acetyltransferase OS=Chromatium vinosum GN=phbA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 47/124 (37.90%), Postives = 71/124 (57.26%), Query Frame = 3
Query:  318 DDVVIVAAYRTAICKAKRGGFKDTL-ADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNS 686
            +++VIV A R+AI     GG   +L A ++   VLK ++ +T L P ++ ++++G VL  G  +    R    +AG P +VP  T+N+ C SGL+AV     AI  G  DI IA G ESM+ +S
Sbjct:    3 ENIVIVDAGRSAI--GTFGGSLSSLSATEIGTAVLKGLLARTGLAPEQIDEVILGQVLTAGVGQN-PARQTTLHAGLPHSVPAMTINKVCGSGLKAVHLAMQAIACGDADIVIAGGQESMSQSS 123          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_PSYA2 (3-ketoacyl-CoA thiolase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 43/118 (36.44%), Postives = 62/118 (52.54%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            DVVIV   R+A+ K K G F+   AD + A +++A++E+   +P +V DI+ G V           R     AG P+T   +TVNR C S +QA+   A  I  G  D+ I  G+E M
Sbjct:    8 DVVIVDGVRSAMGKTKNGMFRHVRADSMSAELVRALVERNDFDPRDVEDIIWGCVNQTLEQGLNIGRNIGLLAGIPKTAGGQTVNRLCGSSMQALHTAAAQIMTGQGDVFIIGGVEHM 125          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_PSEHT (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 44/117 (37.61%), Postives = 64/117 (54.70%), Query Frame = 3
Query:  327 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            VIV   RT + ++K G FK+  A+DL A ++K ++++   ++P+ + DI  G V           R AA  AG P +VP  TVNR C S +QA+ D A AI  G  D  +  G+E M
Sbjct:    5 VIVDCIRTPMGRSKGGVFKNKRAEDLSAHLMKGLLDRNPAVDPASIDDIYWGCVQQTLEQGFNVARNAALLAGIPHSVPAVTVNRLCGSSMQALHDAARAIMTGAGDTYLIGGVEHM 121          
The following BLAST results are available for this feature:
BLAST of FC931090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
FADA_YERPS2.985e-1238.333-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADA_YERPP2.985e-1238.333-ketoacyl-CoA thiolase OS=Yersinia pestis (strain... [more]
FADA_YERPN2.985e-1238.333-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADA_YERPE2.985e-1238.333-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadA... [more]
FADA_YERPA2.985e-1238.333-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADA_YERP32.985e-1238.333-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADA_IDILO2.985e-1238.663-ketoacyl-CoA thiolase OS=Idiomarina loihiensis G... [more]
THIL_CHRVI3.899e-1237.90Acetyl-CoA acetyltransferase OS=Chromatium vinosum... [more]
FADA_PSYA23.899e-1236.443-ketoacyl-CoA thiolase OS=Psychrobacter arcticus ... [more]
FADA_PSEHT3.899e-1237.613-ketoacyl-CoA thiolase OS=Pseudoalteromonas halop... [more]

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Properties
Property NameValue
Genbank descriptionC34101C11EF PostHarvP1 Citrus clementina cDNA clone C34101C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931090 ID=FC931090; Name=FC931090; organism=Citrus clementina; type=EST; length=757bp
GAGTGTCCTATAATTTCCCAAGTATATTTCAGGGGGCCAAAAAAAAAAAA
AAAAAAAAAAACAGGTACTATAACTTCNGGAGTAGATTCAAACCAGGAAA
GAGTAAACAAGTCATCCCTGGTTCTCGATTCATCAGAACTCAAAAGCTTT
CCATTGAAACCTGAGAGTGAGAGATGGAGAAAGCTCTTCACAGACAGAGA
ATTCTGCTTCAACATCTTCAACCTTCTTCTTCCCAAACCAGTGACTCGCC
GGCTATTTCTGCTTCGATTTGTTCGGCTGGTGAAGCTGCAGGATACCATA
GGAAGCCTGCTTTCGATGATGATGTCGTAATTGTGGCTGCATACCGTACT
GCAATTTGCAAGGCGAAACGTGGAGGCTTCAAGGATACTCTTGCCGATGA
TCTGCTTGCACCTGTTCTAAAGGCAGTGATAGAGAAAACGAGGTTGAATC
CCAGTGAAGTAGGGGATATAGTTGTTGGTACAGTCTTGGCACCTGGCTCA
ACAAGAGCCATGGAGTGTAGGATGGCAGCGTTCTATGCTGGTTTCCCTGA
AACGGTGCCCCTCAGAACTGTCAACAGGCAGTGTTCATCTGGCTTGCAGG
CGGTTGCTGATGTTGCAACAGCTATAAAAGCTGGATTGTATGACATTGGT
ATTGCTGCTGGATTGGAAAGCATGACTGTGAATTCTATTAGCGTTGTTGG
CCAGTTAACCCCCAAGTGGAGATCTTTACTCAAGCTCGGGACTGTCTGCT
TCCTATG
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