FC931090

Overview
NameFC931090
Unique NameFC931090
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15271 contig Ccv1_Contig15271:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_SERP5 (3-ketoacyl-CoA thiolase OS=Serratia proteamaculans (strain 568) GN=fadA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.092e-12
Identity = 44/120 (36.67%), Postives = 66/120 (55.00%), Query Frame = 3
Query:  318 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            ++VVIV A RT + ++K G F+   A+DL A +++AV+ +   L+ +E+ DI  G V           R A+  A  P +VP  TVNR C S +QA+ D A AI  G   + +  G+E M
Sbjct:    2 ENVVIVDAVRTPMGRSKGGAFRQVRAEDLSAHLMRAVLSRNPSLDAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDAARAIMVGDAHVSLIGGVEHM 121          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_PSYCK (3-ketoacyl-CoA thiolase OS=Psychrobacter cryohalolentis (strain K5) GN=fadA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.092e-12
Identity = 42/118 (35.59%), Postives = 62/118 (52.54%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            DVVIV   R+A+ K K G F+   AD + A +++A++E+   +P +V DI+ G V           R     AG P+T   +T+NR C S +QA+   A  I  G  D+ I  G+E M
Sbjct:    8 DVVIVDGVRSAMGKTKNGMFRHVRADSMSAELVRALVERNDFDPRDVEDIIWGCVNQTLEQGLNIGRNIGLLAGIPKTAGGQTINRLCGSSMQALHTAAAQIMTGQGDVFIIGGVEHM 125          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_PHOPR (3-ketoacyl-CoA thiolase OS=Photobacterium profundum GN=fadA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.092e-12
Identity = 44/120 (36.67%), Postives = 65/120 (54.17%), Query Frame = 3
Query:  318 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            ++VVIV   RT + ++K G F++  A+DL A ++K +I +  +L+P+ + DI  G V           R A+  AG P TV   TVNR C S +QA+ D   AI  G  +  I  G+E M
Sbjct:    2 NNVVIVDCIRTPMGRSKAGAFRNVRAEDLSAHLMKGLISRNPQLDPNSIEDIYWGCVQQTLEQGFNVARNASLLAGIPHTVAATTVNRLCGSSMQALHDATRAIMVGDAETCIIGGVEHM 121          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_ACIBT (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=fadA PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.092e-12
Identity = 44/118 (37.29%), Postives = 64/118 (54.24%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            DVVIV   R+A+ K+K G F++  AD L A +++A+I + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALIARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM 125          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: PCAF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=pcaF PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 49/117 (41.88%), Postives = 63/117 (53.85%), Query Frame = 3
Query:  330 IVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 677
            IV A RT   +   GG     ADDL A  + A+IE+   +N ++V D++ G     G       RM+A  AG P  VP  TVNR C S L A+A  A AIKAG   + IA G+ESM+
Sbjct:    6 IVDAIRTPFGRYA-GGLAAVRADDLGAIPIAALIERNPSVNWAQVDDVIYGCANQAGEDNRNVGRMSALLAGLPVEVPATTVNRLCGSSLDAIAMAARAIKAGEAHLIIAGGVESMS 121          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_ACIBY (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain AYE) GN=fadA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            DVVIV   R+A+ K+K G F++  AD L A +++A++ + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM 125          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_ACIBS (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain SDF) GN=fadA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            DVVIV   R+A+ K+K G F++  AD L A +++A++ + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM 125          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_ACIBC (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain ACICU) GN=fadA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            DVVIV   R+A+ K+K G F++  AD L A +++A++ + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM 125          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_ACIB5 (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain AB0057) GN=fadA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            DVVIV   R+A+ K+K G F++  AD L A +++A++ + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM 125          
BLAST of FC931090 vs. ExPASy Swiss-Prot
Match: FADA_ACIB3 (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain AB307-0294) GN=fadA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 3
Query:  321 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 674
            DVVIV   R+A+ K+K G F++  AD L A +++A++ + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM 125          
The following BLAST results are available for this feature:
BLAST of FC931090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
FADA_SERP55.092e-1236.673-ketoacyl-CoA thiolase OS=Serratia proteamaculans... [more]
FADA_PSYCK5.092e-1235.593-ketoacyl-CoA thiolase OS=Psychrobacter cryohalol... [more]
FADA_PHOPR5.092e-1236.673-ketoacyl-CoA thiolase OS=Photobacterium profundu... [more]
FADA_ACIBT5.092e-1237.293-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
PCAF_ACIAD6.650e-1241.88Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
FADA_ACIBY6.650e-1236.443-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIBS6.650e-1236.443-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIBC6.650e-1236.443-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIB56.650e-1236.443-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIB36.650e-1236.443-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]

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Properties
Property NameValue
Genbank descriptionC34101C11EF PostHarvP1 Citrus clementina cDNA clone C34101C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931090 ID=FC931090; Name=FC931090; organism=Citrus clementina; type=EST; length=757bp
GAGTGTCCTATAATTTCCCAAGTATATTTCAGGGGGCCAAAAAAAAAAAA
AAAAAAAAAAACAGGTACTATAACTTCNGGAGTAGATTCAAACCAGGAAA
GAGTAAACAAGTCATCCCTGGTTCTCGATTCATCAGAACTCAAAAGCTTT
CCATTGAAACCTGAGAGTGAGAGATGGAGAAAGCTCTTCACAGACAGAGA
ATTCTGCTTCAACATCTTCAACCTTCTTCTTCCCAAACCAGTGACTCGCC
GGCTATTTCTGCTTCGATTTGTTCGGCTGGTGAAGCTGCAGGATACCATA
GGAAGCCTGCTTTCGATGATGATGTCGTAATTGTGGCTGCATACCGTACT
GCAATTTGCAAGGCGAAACGTGGAGGCTTCAAGGATACTCTTGCCGATGA
TCTGCTTGCACCTGTTCTAAAGGCAGTGATAGAGAAAACGAGGTTGAATC
CCAGTGAAGTAGGGGATATAGTTGTTGGTACAGTCTTGGCACCTGGCTCA
ACAAGAGCCATGGAGTGTAGGATGGCAGCGTTCTATGCTGGTTTCCCTGA
AACGGTGCCCCTCAGAACTGTCAACAGGCAGTGTTCATCTGGCTTGCAGG
CGGTTGCTGATGTTGCAACAGCTATAAAAGCTGGATTGTATGACATTGGT
ATTGCTGCTGGATTGGAAAGCATGACTGTGAATTCTATTAGCGTTGTTGG
CCAGTTAACCCCCAAGTGGAGATCTTTACTCAAGCTCGGGACTGTCTGCT
TCCTATG
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