FC931099

Overview
NameFC931099
Unique NameFC931099
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15088 contig Ccv1_Contig15088:29..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931099 vs. ExPASy Swiss-Prot
Match: RS6_CHICK (40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.933e-60
Identity = 124/202 (61.39%), Postives = 146/202 (72.28%), Query Frame = 1
Query:   82 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRGRIAEKKQR 687
            MK NI+ P TGCQK +E+DD++ +R F++KR++ EV  D+LGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RIA KKQR
Sbjct:    1 MKLNISFPATGCQKLIEVDDERNVRTFYEKRMATEVAADSLGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQR 198          
BLAST of FC931099 vs. ExPASy Swiss-Prot
Match: RS6_ONCMY (40S ribosomal protein S6 OS=Oncorhynchus mykiss GN=rps6 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.636e-59
Identity = 122/202 (60.40%), Postives = 146/202 (72.28%), Query Frame = 1
Query:   82 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRGRIAEKKQR 687
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  D LG+E+KGY+ +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CI   +LSVLNLVI+KKGE D+PGLTD+  PR  GPKRASKIRKLFNL+KEDDVR+YV   RR  T +  K  +KAP+IQRLVTP  LQ KR RIA KKQR
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADPLGDEWKGYMVRISGGNDKQGFPMKQGVLTHGRVRLLLAKGHSCY--RPRRTGERKRKSVRGCIGDANLSVLNLVIIKKGEKDIPGLTDSTVPRRLGPKRASKIRKLFNLAKEDDVRQYV--VRRPLTKEGKKPRTKAPRIQRLVTPRVLQHKRRRIALKKQR 198          
BLAST of FC931099 vs. ExPASy Swiss-Prot
Match: RS6_XENLA (40S ribosomal protein S6 OS=Xenopus laevis GN=rps6 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.137e-59
Identity = 122/202 (60.40%), Postives = 145/202 (71.78%), Query Frame = 1
Query:   82 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRGRIAEKKQR 687
            MK NI+ P TGCQK +E++D++KLR F++KR++ EV  D LG+E+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIV+KGE D+PGLTD   PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  LQ KR RIA KKQR
Sbjct:    1 MKLNISFPATGCQKLIEVEDERKLRTFYEKRMATEVAADPLGDEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVRKGEKDIPGLTDNTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLAKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQR 198          
BLAST of FC931099 vs. ExPASy Swiss-Prot
Match: RS6_GLOMM (40S ribosomal protein S6 OS=Glossina morsitans morsitans GN=RpS6 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.875e-58
Identity = 120/203 (59.11%), Postives = 142/203 (69.95%), Query Frame = 1
Query:   82 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK-VSKAPKIQRLVTPLTLQRKRGRIAEKKQR 687
            MK N++ P TGCQK  E++D+ KLR F++K + Q V  D LG+E+KGY+ +I GG DKQGFPMKQGVLT  RVRLLL +G  C+                 CIV  ++SVL LVIVKKGE D+PGLTDT  PR  GPKRASKIRKL+NLSK DDVR YV   RR    K  KK +SKAPKIQRL+TP+ LQRKR RIA KK+R
Sbjct:    1 MKLNVSYPATGCQKLFEVNDEHKLRVFYEKHMGQVVEADILGDEWKGYMLRISGGNDKQGFPMKQGVLTHDRVRLLLKKGHSCY--RPRRTGERKRKSVRGCIVDANMSVLALVIVKKGEKDIPGLTDTSVPRRLGPKRASKIRKLYNLSKVDDVRPYV--IRRPLPAKDNKKAISKAPKIQRLITPVVLQRKRRRIALKKKR 199          
BLAST of FC931099 vs. ExPASy Swiss-Prot
Match: RS6_DROME (40S ribosomal protein S6 OS=Drosophila melanogaster GN=RpS6 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.532e-57
Identity = 119/203 (58.62%), Postives = 142/203 (69.95%), Query Frame = 1
Query:   82 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK-VSKAPKIQRLVTPLTLQRKRGRIAEKKQR 687
            MK N++ P TGCQK  E+ D+ KLR F++KR+ Q V  D LG+E+KGY  +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  ++SVL LV++KKGE D+PGLTDT  PR  GPKRASKIRKL+NLSKEDDVR++V   RR    K  KK  SKAPKIQRL+TP+ LQRK  RIA KK+R
Sbjct:    1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGVLTHGRVRLLLKKGHSCY--RPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKDIPGLTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFV--VRRPLPAKDNKKATSKAPKIQRLITPVVLQRKHRRIALKKKR 199          
BLAST of FC931099 vs. ExPASy Swiss-Prot
Match: RS6_BRAFL (40S ribosomal protein S6 OS=Branchiostoma floridae GN=RPS6 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.532e-57
Identity = 118/203 (58.13%), Postives = 145/203 (71.43%), Query Frame = 1
Query:   82 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS-KAPKIQRLVTPLTLQRKRGRIAEKKQR 687
            MK NI+ P TGCQK +E+DD++KLR F++KR+S ++  ++LG+E+KGY+ +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVI+KKGE D+PGLTDT  PR  GPKRA +IRKLFNL+KEDDVR+YV   RR    K GKK   K PKIQRL+TP  LQRKR   A K++R
Sbjct:    1 MKINISYPATGCQKLIEVDDERKLRPFYEKRMSHQMTAESLGDEWKGYLVRISGGNDKQGFPMKQGVLTNGRVRLLLGKGHSCY--RPRRTGERKRKSVRGCIVDSNLSVLNLVILKKGEQDIPGLTDTTIPRRLGPKRAGRIRKLFNLNKEDDVRQYV--VRRPLPQKEGKKQKFKTPKIQRLITPQRLQRKRHMRAVKRRR 199          
BLAST of FC931099 vs. ExPASy Swiss-Prot
Match: RS6_AEDAE (40S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.532e-57
Identity = 118/204 (57.84%), Postives = 143/204 (70.10%), Query Frame = 1
Query:   82 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKV-SKAPKIQRLVTPLTLQRKRGRIAEKKQRI 690
            MK N++ P TG QK  E+ DD KLR F+DKR+  E+  D LG+E+KGYVFKI GG DKQGFPMKQGVLT  RVRLLL +G  C+                 CIV  +LS L L++VKKGE D+PGLTDT  PR  GPKRAS IRKL+NL+KEDDVR++V   +R    K GKK  +KAPKIQRL+TP+ LQRKR R+A KK+R+
Sbjct:    1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQGFPMKQGVLTNTRVRLLLKKGHSCY--RPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKDIPGLTDTTVPRRLGPKRASNIRKLYNLTKEDDVRQFV--VKRPLPEKDGKKARTKAPKIQRLITPVVLQRKRHRLAIKKRRV 200          
BLAST of FC931099 vs. ExPASy Swiss-Prot
Match: RS6_SPOFR (40S ribosomal protein S6 OS=Spodoptera frugiperda GN=RpS6 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.297e-56
Identity = 118/207 (57.00%), Postives = 144/207 (69.57%), Query Frame = 1
Query:   82 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVS----KAPKIQRLVTPLTLQRKRGRIAEKKQRI 690
            MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV +I GG DKQGFPMKQGVLT  RVRLL+ +G  C+                 CIV  +LSVL LVIV+KGE ++PGLTD   PR  GPKRASKIRKLFNLSKEDDVR+YV   +R    K GK+ +    KAPKIQRLVTP+ LQR+R R+A KK+R+
Sbjct:    1 MKLNVSFPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRIAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCY--RPRRDGERKRKSVRGCIVDANLSVLALVIVRKGEQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRLLPAKEGKENAKPRYKAPKIQRLVTPVVLQRRRHRLALKKKRL 203          
BLAST of FC931099 vs. ExPASy Swiss-Prot
Match: RS6_AEDAL (40S ribosomal protein S6 OS=Aedes albopictus GN=RpS6 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.297e-56
Identity = 118/204 (57.84%), Postives = 142/204 (69.61%), Query Frame = 1
Query:   82 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKV-SKAPKIQRLVTPLTLQRKRGRIAEKKQRI 690
            MK N++ P TG QK  E+ DD KLR F+DKR+  E+  D LG+E+KGYVFKI GG DKQGFPMKQGVLT  RVRLLL +G  C+                 CIV  +LS L L++VKKGE D+PGLTDT   R  GPKRAS IRKL+NL+KEDDVR+YV   +R    K GKK  +KAPKIQRL+TP+ LQRKR R+A KK+R+
Sbjct:    1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQGFPMKQGVLTNTRVRLLLKKGHSCY--RPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKDIPGLTDTTVLRRLGPKRASNIRKLYNLTKEDDVRQYV--VKRPLPEKDGKKPRTKAPKIQRLITPVVLQRKRHRLAIKKRRV 200          
BLAST of FC931099 vs. ExPASy Swiss-Prot
Match: RS6B_SCHPO (40S ribosomal protein S6-B OS=Schizosaccharomyces pombe GN=rps6b PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.927e-56
Identity = 119/203 (58.62%), Postives = 139/203 (68.47%), Query Frame = 1
Query:   82 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKK-VSKAPKIQRLVTPLTLQRKRGRIAEKKQR 687
            MK NI+ P  G QK +EIDDD++LR F +KR+ QEV GD++G EF GYVFKI GG DKQGFPM QGVL P RVRLLL  G PC+                 CIV  DL+VL L IVK+GE D+PGLTD   P+  GPKRASKIR+ FNLSKEDDVR++V   R     K GKK  +KAPKIQRLVTP TLQ KR R A K+++
Sbjct:    1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVLLPHRVRLLLRAGHPCY--RPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFV-IRREVVPKKEGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRRQ 200          
The following BLAST results are available for this feature:
BLAST of FC931099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS6_CHICK1.933e-6061.3940S ribosomal protein S6 OS=Gallus gallus GN=RPS6 ... [more]
RS6_ONCMY1.636e-5960.4040S ribosomal protein S6 OS=Oncorhynchus mykiss GN... [more]
RS6_XENLA2.137e-5960.4040S ribosomal protein S6 OS=Xenopus laevis GN=rps6... [more]
RS6_GLOMM6.875e-5859.1140S ribosomal protein S6 OS=Glossina morsitans mor... [more]
RS6_DROME1.532e-5758.6240S ribosomal protein S6 OS=Drosophila melanogaste... [more]
RS6_BRAFL1.532e-5758.1340S ribosomal protein S6 OS=Branchiostoma floridae... [more]
RS6_AEDAE1.532e-5757.8440S ribosomal protein S6 OS=Aedes aegypti GN=RpS6 ... [more]
RS6_SPOFR1.297e-5657.0040S ribosomal protein S6 OS=Spodoptera frugiperda ... [more]
RS6_AEDAL1.297e-5657.8440S ribosomal protein S6 OS=Aedes albopictus GN=Rp... [more]
RS6B_SCHPO4.927e-5658.6240S ribosomal protein S6-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC34101D09EF PostHarvP1 Citrus clementina cDNA clone C34101D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931099 ID=FC931099; Name=FC931099; organism=Citrus clementina; type=EST; length=691bp
GAAACCTCAGAGAAGGAGTCGGAGTAGTACTAGAGCCGAAGCGCTTCTCA
TCTCTTTAGCCACAGACTCTATCGAACAAAGATGAAGTTCAATATCGCAA
ATCCCACCACTGGGTGCCAGAAGAAGCTCGAAATTGACGATGACCAGAAA
CTTCGAGCATTTTTTGACAAGAGGATCTCTCAAGAAGTCAATGGAGATGC
TCTTGGCGAGGAGTTCAAGGGATATGTGTTCAAGATTATGGGTGGCTGCG
ACAAGCAAGGTTTTCCCATGAAGCAAGGAGTGCTGACTCCCGGCCGTGTT
CGTCTTCTGCTCCACCGTGGTACCCCTTGCTTCCGTGGGTATGGCAGGAG
AGATGGAGAGCGCAGGAGGAAGTCTGTTCGTGGATGCATAGTTAGTCCAG
ATCTCTCCGTGTTGAATTTGGTCATTGTGAAAAAGGGAGAACATGACCTT
CCTGGACTTACCGATACAGAAAAGCCCAGAATGAGAGGTCCCAAGAGAGC
ATCGAAGATCAGGAAGTTGTTCAACCTTTCCAAGGAGGATGATGTTAGGA
AGTACGTTAACACCTATCGTAGGACCTTCACAACAAAATCTGGTAAGAAG
GTTAGCAAGGCACCGAAAATTCAGAGGTTGGTAACTCCTTTGACTCTGCA
AAGGAAGCGTGGCAGAATTGCAGAAAAGAAGCAGAGAATTG
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