FC931100

Overview
NameFC931100
Unique NameFC931100
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15273 contig Ccv1_Contig15273:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931100 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20
Identity = 65/189 (34.39%), Postives = 103/189 (54.50%), Query Frame = 2
Query:   71 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGL 634
            +KRIEN+ NRQVT++KRRNGL KKA+ELSVLCDA+V++I+ S+  KL+E+ S ++  K L ++YQK         V    +     Q+   KL      L+R  R  +GE L  L  +++ +L   +D SLK IR  + + + + +   + K + + E ++ L            L+ +   ED  +GL
Sbjct:    8 IKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKA------VGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNL-----------VLEFDARREDPHFGL 179          
BLAST of FC931100 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.016e-19
Identity = 61/170 (35.88%), Postives = 99/170 (58.24%), Query Frame = 2
Query:  128 GLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS-SMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYL---KLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQ--LNPSAED 619
            GLLKKA EL++LCDA++ +IIFS+ GK++EF S   SM + ++RYQK         +S   A    +QQ Y    ++K   + LQ + R+  GE+L  L   E+  LE+QL++S+ ++RS + Q +   L  L+ KE +L E N+ L + + + +  +  Q  ++PS  D
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQK---------LSGNCAPVYDNQQVYCEITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQLDNLRRKENMLEEQNRELYRVIQDHHAASMEQKMVDPSMLD 162          
BLAST of FC931100 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 6.586e-19
Identity = 62/176 (35.23%), Postives = 97/176 (55.11%), Query Frame = 2
Query:   71 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSS------MLKTLERYQ----KCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 568
            +KRIEN  NRQVTF+KRR G+LKKA E+ VLCDAEV ++IFS+ GKL ++C+  +      + + LE+YQ    K  +     ++SA          E  ++K   + +Q   R++ GE+L  L  KEL ++E  L+     +R      M+D     +  E++L + +K L  R+
Sbjct:    8 IKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNSGKILWDEKHKSLSA----------EIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNGQANLRDK----MMDHWRMHKRNEKMLEDEHKMLAFRV 169          
BLAST of FC931100 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18
Identity = 65/189 (34.39%), Postives = 107/189 (56.61%), Query Frame = 2
Query:   71 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGL 634
            +KRIEN+ NRQVT++KRRNGL KKA+EL+VLCDA V++I+FS+  KL+E+ S ++  K + + YQ  +    + +V A +   +  Q+   KL      L+   +  LGE L  L+ +EL  LE +++ + K +R  + + + + +   + K +   +  K L         ++ L+L   AED  YGL
Sbjct:    8 IKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTIS----DVDVWATQYERM--QETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNL---------IHELELR--AEDPHYGL 179          
BLAST of FC931100 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 55/167 (32.93%), Postives = 93/167 (55.69%), Query Frame = 2
Query:   71 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS-SMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 568
            +++IENK NRQVTF+KRRNG++KKA EL+VLCDA+V+L++ S+  KL+ + S   S+ K  + YQK         V          Q+++ K+      L+R     +G +L  L   EL +L+++++ ++ QIR+ +   + +     + K + L E +  L   L
Sbjct:    8 IRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKIE------GVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKKYHTIKNQTGTTRKKIKNLEERHTDLVMEL 168          
BLAST of FC931100 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.163e-15
Identity = 56/191 (29.32%), Postives = 99/191 (51.83%), Query Frame = 2
Query:   71 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS--SMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLK 637
            +KRIEN   RQ TF KRR+GL KKA EL+VLCDA++ L++FS  GKLY F S +  S+ + +ERY+   +     ++      EL       K+ +  + L++  R +  ++        LE+LE  L+ +++++RS + + +   +  LQ+  +   E    L  ++     +  ++   ++   G  LK
Sbjct:    8 IKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYEATTHTKVWADIRQERRAELE------KVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMRKVRSEKDRKIGGEICYLQNIIRGRQEERYGLCDKIAHAQTLKDVECGSTSLSNGLDLK 192          
BLAST of FC931100 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.088e-13
Identity = 45/124 (36.29%), Postives = 72/124 (58.06%), Query Frame = 2
Query:   71 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERY--------------------QKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQR 382
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y                    +K N G   P+  +  AL   ++++Y K+   ++ + +S +
Sbjct:    8 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYNEPHESRTNSDIVEALNKKENKGCESPDPDSSYALTPRTEEKYKKINEEFDNMIKSHK 130          
BLAST of FC931100 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 39/82 (47.56%), Postives = 59/82 (71.95%), Query Frame = 2
Query:   71 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALE 316
            + RI ++ NRQVTF KR+ G++KKAYELSVLCD E+ALIIFS+  KLY++ +S+ M + L +Y +  Y  P  +++ +  +E
Sbjct:    8 ISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQY-ASTDMDRVLLKYTE--YNEPHESLTNKNIIE 86          
BLAST of FC931100 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 2
Query:   71 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREA 310
            ++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N    EP+ S   A
Sbjct:    8 IQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYN----EPHESRTNA 82          
BLAST of FC931100 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.135e-13
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 2
Query:   71 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREA 310
            ++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N    EP+ S   A
Sbjct:    8 IQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYN----EPHESRTNA 82          
The following BLAST results are available for this feature:
BLAST of FC931100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
DEFA_ANTMA5.957e-2034.39Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
AP32_ASAEU1.016e-1935.88MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
MADS4_ORYSJ6.586e-1935.23MADS-box transcription factor 4 OS=Oryza sativa su... [more]
AP3_ARATH1.467e-1834.39Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
CMB2_DIACA1.373e-1632.93MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
MAD32_ORYSJ1.163e-1529.32MADS-box transcription factor 32 OS=Oryza sativa s... [more]
MEF2C_PIG1.088e-1336.29Myocyte-specific enhancer factor 2C OS=Sus scrofa ... [more]
MEF2_DROME4.135e-1347.56Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MEF2D_XENLA4.135e-1351.25Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]
MEF2D_RAT4.135e-1351.25Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionC34101D10EF PostHarvP1 Citrus clementina cDNA clone C34101D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931100 ID=FC931100; Name=FC931100; organism=Citrus clementina; type=EST; length=712bp
GGAGATATATGAATATATAGTCATAGAAGAAGAAAGAAAGGAGAAGAAAA
TGGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGAGAACAAGATCAACAGG
CAAGTGACCTTTGCAAAGAGAAGAAATGGCCTTTTGAAGAAAGCTTATGA
GCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCCAATA
GAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACGCTT
GAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAACCGAATGTGTCCGC
AAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAAGCTTAAAG
CACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTGGAGAAGAA
CTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTTGA
TATGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACATGCTGGATA
CCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAGCAAATAAG
ACCCTCAAACAAAGGTTGATGGAGGGATACCAAGTGAACACACTTCAATT
GAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCTC
AGGGCGATACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAATT
GGATACCAGCCT
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