FC931102

Overview
NameFC931102
Unique NameFC931102
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15275 contig Ccv1_Contig15275:1..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931102 vs. ExPASy Swiss-Prot
Match: RPP8_ARATH (Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 80/264 (30.30%), Postives = 110/264 (41.67%), Query Frame = 2
Query:    8 KTLGGLLRGKHDRREWE---DVLSSKI----WELPQERCRIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEDEEIILLWCASGFLDHGESGNPSEDLGRKFFQELRARSFFQQSSNSIS----RFVMHDLVNDLAQWAAGEMYFRMEYI-----SEVNKQQ-SFSRNLRHLS----YIRGDYDGVK-------RFED-----LCDIQHLRTLLPVTLLSSWPGFLAPSILTELFKLQRLRVFSLRGYHISELPDSVGDLRCL 700
            K LGGLL  KH   EW+   D + S+I    W        +   L++SY  LP  LK CF   + FP+D E     +   W A G  D    G+  ED G  + +EL  R+      N +S       MHD++ ++    A E  F    I     S +N Q  S SR L   S    +I G  +  K       RFE+        + H  TLL V  L SW  F    +   +  L  LR  SL    +S LP ++ +L+ L
Sbjct:  368 KALGGLLANKHTVPEWKRVFDNIGSQIVGGSWLDDNSLNSVYRILSLSYEDLPTHLKHCFLNLAHFPEDSEISTYSLFYYWAAEGIYD----GSTIEDSGEYYLEELVRRNLVIADDNYLSWQSKYCQMHDMMREVCLSKAKEENFLQIIIDPTCTSTINAQSPSRSRRLSIHSGKAFHILGHKNKTKVRSLIVPRFEEDYWIRSASVFHNLTLLRVLDL-SWVKFEGGKLPCSIGGLIHLRYLSLYEAKVSHLPSTMRNLKLL 626          
BLAST of FC931102 vs. ExPASy Swiss-Prot
Match: DRL37_ARATH (Probable disease resistance protein At5g47250 OS=Arabidopsis thaliana GN=At5g47250 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 58/236 (24.58%), Postives = 91/236 (38.56%), Query Frame = 2
Query:   59 DVLSSKIWELPQERCRIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEDEEIILLWCASGFLDHGESGNPSEDLGRKFFQELRARSFFQQSSNSISRFVMHDLVNDLAQWAAGEMYFRMEYI----------------SEVNKQQSFSRNLRHLSYIRGDYDGV---------KRFEDLCDIQHLRTLLPVTLLSSWPGFLAPSILTELFKLQRLRVFSLRGYHISELPDSVGDL 691
            D L S   E+      I   L +SY YL     +CF YC+LFPK Y  + +E++  W   GF+D  +    ++D G +    L       +S+  +    MHD++ D+A W   E      Y+                + V K   F+  ++++       D            R  D+     L     V L  SW  F    +   +  L  LR+ +L G  I  LP+ +G L
Sbjct:  373 DTLESYRSEMKGTEKGIFQVLKLSYDYLKTKNAKCFLYCALFPKAYYIKQDELVEYWIGEGFIDEKDGRERAKDRGYEIIDNLVGAGLLLESNKKV---YMHDMIRDMALWIVSEFRDGERYVVKTDAGLSQLPDVTDWTTVTKMSLFNNEIKNIPDDPEFPDQTNLVTLFLQNNRLVDIVGKFFLVMSTLVVLDLSW-NFQITELPKGISALVSLRLLNLSGTSIKHLPEGLGVL 604          
BLAST of FC931102 vs. ExPASy Swiss-Prot
Match: DRL27_ARATH (Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 41/130 (31.54%), Postives = 61/130 (46.92%), Query Frame = 2
Query:   11 TLGGLLRGKHDRREWEDVLSSKIWELPQERC---RIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEDEEIILLWCASGFLDHGESGNPSEDLGRKFFQELRARSFFQQSSNSISRFVMHDLVNDLAQW 391
            T+G  +RGK + + W  VLS     +P  +    +I   L +SY +L    K CF  C+LFP+DY  E  E++  W A GF++   S   S + G    + L+     +          MHD+V D A W
Sbjct:  344 TVGTAMRGKKNVKLWNHVLSKLSKSVPWIKSIEEKIFQPLKLSYDFLEDKAKFCFLLCALFPEDYSIEVTEVVRYWMAEGFMEELGSQEDSMNEGITTVESLKDYCLLEDGDRR-DTVKMHDVVRDFAIW 472          
BLAST of FC931102 vs. ExPASy Swiss-Prot
Match: DRL13_ARATH (Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 65/248 (26.21%), Postives = 112/248 (45.16%), Query Frame = 2
Query:    8 KTLGGLLRGKHDRREWEDVLSSKIWEL--------PQERCRIIPALAVSYYYLPPTLKQCFAYCSLFPKDYEFEDEEIILLWCASGFLDHGE-SGNPSEDLGRKFFQELRARSFFQQSSNSI-SRF---VMHDLVNDLAQWAAGEMYFRMEYISEVNKQQSF-----SRNLRHLSYIRGDYDGVKRFEDLCDIQHLRTLLPVTLLSSWPGFLAPSILTELFKLQRLRVFSLRG--YHISELPDSVGDL 691
            K LGGLL  KH  R+W+ +  + I  +          +   +   L++S+  LP  LK C  Y + +P+D+E E E +  +W A G    G   G    D+   + +EL  R+      +++ SRF    +HDL+ ++    A E  F ++ +++     S      SR+ R + Y    + G    ++      LR+LL + +     G+   S+ +   +L  LRV  L G  +   +LP S+G L
Sbjct:  360 KLLGGLLDAKHTLRQWKLISENIISHIVVGGTSSNENDSSSVNHVLSLSFEGLPGYLKHCLLYLASYPEDHEIEIERLSYVWAAEGITYPGNYEGATIRDVADLYIEELVKRNMVISERDALTSRFEKCQLHDLMREICLLKAKEENF-LQIVTDPTSSSSVHSLASSRSRRLVVYNTSIFSGENDMKN----SKLRSLLFIPV-----GYSRFSMGSNFIELPLLRVLDLDGAKFKGGKLPSSIGKL 597          
The following BLAST results are available for this feature:
BLAST of FC931102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RPP8_ARATH7.798e-1230.30Disease resistance protein RPP8 OS=Arabidopsis tha... [more]
DRL37_ARATH1.018e-1124.58Probable disease resistance protein At5g47250 OS=A... [more]
DRL27_ARATH3.870e-1131.54Disease resistance protein At4g27190 OS=Arabidopsi... [more]
DRL13_ARATH5.054e-1126.21Putative disease resistance protein At1g59780 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC34101D12EF PostHarvP1 Citrus clementina cDNA clone C34101D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931102 ID=FC931102; Name=FC931102; organism=Citrus clementina; type=EST; length=714bp
TGGCAGCAAAACGCTAGGAGGACTTTTACGTGGAAAACATGACAGACGTG
AGTGGGAAGATGTGCTCAGTAGCAAGATATGGGAATTACCACAAGAGAGA
TGTCGCATTATACCAGCCCTTGCAGTGAGCTATTATTATCTTCCTCCAAC
TTTGAAACAATGCTTTGCATACTGCTCATTGTTTCCAAAGGATTACGAAT
TTGAAGACGAGGAGATAATTTTATTATGGTGTGCTTCGGGTTTCTTGGAT
CACGGAGAGAGCGGGAATCCTAGTGAAGATCTAGGTCGAAAGTTCTTTCA
AGAGCTACGTGCAAGATCTTTTTTCCAGCAATCAAGCAATAGTATATCAC
GATTTGTGATGCACGACCTCGTCAATGACCTTGCTCAATGGGCTGCTGGG
GAAATGTACTTCAGAATGGAGTATATCTCAGAGGTTAACAAGCAGCAAAG
TTTTTCAAGAAATCTTCGTCATCTGTCGTACATTCGTGGAGATTACGATG
GTGTTAAAAGGTTTGAGGACTTGTGCGATATCCAACACTTGCGAACTCTT
TTACCAGTAACGTTGTTAAGTAGCTGGCCTGGATTCTTGGCTCCTAGCAT
TCTTACTGAGTTGTTCAAACTCCAACGATTGAGGGTCTTCTCTCTGCGTG
GATATCACATCTCCGAGCTGCCGGATTCAGTTGGTGATTTGAGGTGTTTA
GGCACCTTAACTGT
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