FC931104

Overview
NameFC931104
Unique NameFC931104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931104 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 9.706e-58
Identity = 102/231 (44.16%), Postives = 149/231 (64.50%), Query Frame = 1
Query:   31 YFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSILDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTXXXXXXXXXXXXXXXKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGEFNSTV 723
            + GALFFS++ IMFNG++EL +T+ +LPVF+KQRD LF+PAW + +P W+L+IP+S ++   ++ ++YY IGF P+A RFFKQYL    I+ MA  L+RF+    R  ++ N  G+               ++ ++ +  WGY++SPMMY Q +I V+EFL   WD    + S++  TLG   L+ RG + ++ WYWIG GAL+GF  LFN LF  ALTYL P G+   +V
Sbjct:  578 FMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARNMIVANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDKVL-NNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQPSV 807          
BLAST of FC931104 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.656e-57
Identity = 101/238 (42.44%), Postives = 157/238 (65.97%), Query Frame = 1
Query:   10 DLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSILDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTXXXXXXXXXXXXXXXKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGEFNSTV 723
            D + G  Y GAL+F+L  +MFNG AEL+MTV++LPVF+KQRD LF+PAWA+ +P W+L+IP++ L+  +++ +TYY IGF P+ SRFFKQYL    ++ M+  L+RFIA IGR  V+++  G                + D++ +  WGY++SP+ Y Q +I  +EFL   W       ++   TLG ++LK RG + ++ WYWIG+GAL+G++ LFN L+  AL+ L+P  + ++++
Sbjct:  555 DRDYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTIPSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGRDMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWSQILPGENV---TLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHASM 789          
BLAST of FC931104 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.162e-57
Identity = 104/237 (43.88%), Postives = 152/237 (64.14%), Query Frame = 1
Query:   13 LEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSILDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTXXXXXXXXXXXXXXXKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGEFNSTV 723
            +E G  + GA+F  L+  +FNG AEL+M++ +LP+FYKQRD LFYP+WA+ALP WVL+IP+S L+  +WI +TYY +GF P   RFF+ Y+    I  MA  L+R +AA+GR  V+ +  G+               +++I+ +  WGY+ SP+MY Q +I V+EFL   W+        N+ TLG  +LK RG + D+ WYWIG+GAL+G+  LFN LFI  L +L+P+G+  + V
Sbjct:  552 VEDGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIPISFLECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTFGSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQSND-TLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVV 787          
BLAST of FC931104 vs. ExPASy Swiss-Prot
Match: PDR13_ORYSJ (Pleiotropic drug resistance protein 13 OS=Oryza sativa subsp. japonica GN=PDR13 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.830e-56
Identity = 101/238 (42.44%), Postives = 145/238 (60.92%), Query Frame = 1
Query:   10 DLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSILDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTXXXXXXXXXXXXXXXKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGEFNSTV 723
            D + GN Y   LFF L+++MFNG  E++MT+ RLPVFYKQRD+ F+PAWAF+LP W+LRIP S +++ +W  + YYT+GFAP   RFF+  L  F IH MAL L+R + AI R   I +  G+               K  I+P+ +W Y++SP+MY Q ++ V+EF   RW   S   ++   T+G  +L       D +W+WIG+G L+ +S  FN +F  AL +LNP+ +  S V
Sbjct:  552 DEQNGNLYLACLFFGLVHMMFNGFTEMTMTISRLPVFYKQRDNFFHPAWAFSLPNWILRIPYSFIEAVVWSCVVYYTVGFAPTVDRFFRFMLLLFSIHQMALGLFRMMGAIARDMTIASTFGSAVLLAIFLLGGFVVPKGFIKPWWDWAYWISPLMYAQRAVSVNEFSASRWSKVSVSGNM---TVGTNILISHSLPTDDHWFWIGVGVLLAYSIFFNIMFTLALAFLNPLRKPQSMV 786          
BLAST of FC931104 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.084e-56
Identity = 103/234 (44.02%), Postives = 144/234 (61.54%), Query Frame = 1
Query:   22 GNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSILDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTXXXXXXXXXXXXXXXKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGEFNSTV 723
            G  Y GALFF +L IMFNG +EL++TV +LPVF+KQRD LFYPAW++ +P W+L+IP++ ++   ++ LTYY IGF      FFKQYL    I+ MA  L+RFI    R  ++ N   +               ++ ++ +  WGY++SPMMY Q +I V+E +   W+      + NE TLG  +LK RG + ++ WYWIG GA+IGF+ LFN LF  ALTYL P G    +V
Sbjct:  566 GGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNE-TLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSV 798          
BLAST of FC931104 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.084e-56
Identity = 103/234 (44.02%), Postives = 144/234 (61.54%), Query Frame = 1
Query:   22 GNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSILDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTXXXXXXXXXXXXXXXKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGEFNSTV 723
            G  Y GALFF +L IMFNG +EL++TV +LPVF+KQRD LFYPAW++ +P W+L+IP++ ++   ++ LTYY IGF      FFKQYL    I+ MA  L+RFI    R  ++ N   +               ++ ++ +  WGY++SPMMY Q +I V+E +   W+      + NE TLG  +LK RG + ++ WYWIG GA+IGF+ LFN LF  ALTYL P G    +V
Sbjct:  566 GGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNE-TLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSV 798          
BLAST of FC931104 vs. ExPASy Swiss-Prot
Match: PDR6_ORYSJ (Pleiotropic drug resistance protein 6 OS=Oryza sativa subsp. japonica GN=PDR6 PE=2 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 5.888e-55
Identity = 96/237 (40.51%), Postives = 148/237 (62.45%), Query Frame = 1
Query:   13 LEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSILDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTXXXXXXXXXXXXXXXKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGEFNSTV 723
            ++ G  Y GAL+F+++ I+FNG  E+S+ V +LP+ YK RD  FYP WA+ LP W+L IP S+++S +W+++TYY +G+ P  +R   Q+L  F +H  +L L+R +A++GR  ++ N  G+               K+ I  +  WGY++SPMMY Q +I V+EFL   W     +++I   TLG+A+L   G + + YW+WIG+GAL G++ + NFLF   LT LNPIG   + V
Sbjct:  541 VDDGIIYLGALYFAIVMILFNGFTEVSLLVTKLPILYKHRDLHFYPPWAYTLPSWLLSIPTSLIESGMWVLVTYYVVGYDPQFTRCLGQFLLLFFLHQTSLALFRVMASLGRNMIVANTFGSFALLVVMILGGFIITKESIPAWWIWGYWISPMMYAQNAISVNEFLGHSWSQQFANQNI---TLGEAILTGYGLFKEKYWFWIGVGALFGYAIVLNFLFTLFLTLLNPIGNIQAVV 774          
BLAST of FC931104 vs. ExPASy Swiss-Prot
Match: PDR12_ORYSJ (Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.238e-54
Identity = 108/234 (46.15%), Postives = 143/234 (61.11%), Query Frame = 1
Query:   10 DLEGGNKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSILDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTXXXXXXXXXXXXXXXKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRW-DVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGE 708
            +L+ G  Y GAL FSL+  MFNG AELS+T+ RLPVF+K RD LFYPAW F LP  +LRIP SI++S +W+++TYYTIGFAP A RFFKQ L  F I  MA  L+R  A + R+ +I    G                K  I  +  WGY+VSP+MYG  ++ V+EF   RW +    D +   + LG AL++    + D  W+WIG   L+GF+  FN LF  +L YLNP+G+
Sbjct:  580 NLDDGFVYIGALLFSLIVNMFNGFAELSLTITRLPVFFKHRDLLFYPAWIFTLPNVILRIPFSIIESIVWVIVTYYTIGFAPEADRFFKQLLLVFLIQQMAGGLFRATAGLCRSMIIAQTGGALALLIFFVLGGFLLPKAFIPKWWIWGYWVSPLMYGYNALAVNEFYSPRWMNKFVLDNNGVPKRLGIALMEGANIFTDKNWFWIGAAGLLGFTMFFNVLFTLSLVYLNPLGK 813          
BLAST of FC931104 vs. ExPASy Swiss-Prot
Match: AB36G_ARATH (ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.238e-54
Identity = 110/230 (47.83%), Postives = 143/230 (62.17%), Query Frame = 1
Query:   25 NKYFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSILDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTXXXXXXXXXXXXXXXKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRW--DVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGE 708
            N Y GAL F ++  MFNG AE++M V RLPVFYKQRD LFYP+W F+LP ++L IP SIL+ST W+V+TYY+IGFAP ASRFFKQ+L  F I  MA  L+R IA++ RT +I N  G                K  I  +  W Y+VSP+ Y    ++V+E    RW   + S + +I    LG  +L     Y+   WYWI +GAL+ F+ LFN LF  ALTYLNP+G+
Sbjct:  574 NLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSILESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGALTLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIK---LGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGK 800          
BLAST of FC931104 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.922e-54
Identity = 96/231 (41.56%), Postives = 141/231 (61.04%), Query Frame = 1
Query:   31 YFGALFFSLLNIMFNGMAELSMTVLRLPVFYKQRDHLFYPAWAFALPIWVLRIPLSILDSTIWIVLTYYTIGFAPAASRFFKQYLAYFCIHNMALPLYRFIAAIGRTEVITNALGTXXXXXXXXXXXXXXXKDDIEPFLEWGYYVSPMMYGQTSILVDEFLDGRWDVPSGDRSINERTLGKALLKRRGFYNDSYWYWIGIGALIGFSFLFNFLFIAALTYLNPIGEFNSTV 723
            + GALFF+++ IM NG++EL +T+ +LPVF+KQRD LF+PAW + +P W+L+ P+S ++   +  ++YY IGF P   RFFKQYL    +  MA  L+RF+    R  ++ N  G+               +D +  +  WGY++SPMMY Q ++ V+EFL   WD    + S++  TLG   L  RG + ++ WYWIG GAL+GF  LFN LF  ALTYL P G+   ++
Sbjct:  582 FMGALFFAVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKSPMSFIEVGGFCFMSYYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANVFGSFMLLIFMVLGGFILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVL-NNSLSNETLGVQALMSRGIFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSI 811          
The following BLAST results are available for this feature:
BLAST of FC931104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PDR2_ORYSJ9.706e-5844.16Probable pleiotropic drug resistance protein 2 OS=... [more]
PDR4_ORYSJ1.656e-5742.44Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR7_ORYSJ2.162e-5743.88Putative pleiotropic drug resistance protein 7 OS=... [more]
PDR13_ORYSJ1.830e-5642.44Pleiotropic drug resistance protein 13 OS=Oryza sa... [more]
PDR3_ORYSJ9.084e-5644.02Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI9.084e-5644.02Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR6_ORYSJ5.888e-5540.51Pleiotropic drug resistance protein 6 OS=Oryza sat... [more]
PDR12_ORYSJ2.238e-5446.15Pleiotropic drug resistance protein 12 OS=Oryza sa... [more]
AB36G_ARATH2.238e-5447.83ABC transporter G family member 36 OS=Arabidopsis ... [more]
PDR1_ORYSJ2.922e-5441.56Probable pleiotropic drug resistance protein 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34101E02EF PostHarvP1 Citrus clementina cDNA clone C34101E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931104 ID=FC931104; Name=FC931104; organism=Citrus clementina; type=EST; length=724bp
TCAGTGGGAGATCTGGAAGGTGGCAATAAGTATTTCGGAGCACTGTTTTT
CAGTCTGCTTAATATTATGTTTAACGGGATGGCAGAACTTTCAATGACTG
TTTTGAGGCTACCTGTATTTTATAAACAAAGGGATCACTTATTCTATCCT
GCGTGGGCTTTTGCCTTACCTATATGGGTTCTCCGGATCCCATTATCAAT
CCTGGATTCAACAATATGGATCGTTCTGACCTACTACACAATAGGTTTTG
CTCCAGCAGCAAGCAGGTTCTTCAAACAATACTTGGCATACTTTTGTATA
CACAATATGGCTCTGCCCCTTTACCGGTTCATTGCTGCTATTGGAAGAAC
TGAGGTTATTACAAACGCACTGGGTACTTTCGCCTTGTTACTCATTTTTT
CACTCGGAGGATTCATCATTGCCAAAGATGACATTGAGCCATTCCTGGAA
TGGGGCTACTATGTTTCGCCTATGATGTATGGACAGACTTCCATACTTGT
AGATGAATTCCTTGATGGAAGATGGGATGTGCCCAGTGGAGACCGCAGCA
TTAATGAACGTACACTTGGGAAAGCACTTCTCAAGAGGAGAGGCTTCTAC
AATGACAGTTACTGGTATTGGATTGGCATCGGAGCACTGATTGGATTTTC
TTTTCTCTTCAACTTTTTGTTTATTGCAGCATTGACTTACTTGAATCCTA
TCGGTGAATTCAACTCAACTGTCG
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