FC931112

Overview
NameFC931112
Unique NameFC931112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14473 contig Ccv1_Contig14473:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931112 vs. ExPASy Swiss-Prot
Match: CATW_HUMAN (Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.788e-12
Identity = 49/169 (28.99%), Postives = 77/169 (45.56%), Query Frame = 1
Query:  211 SLDEKHKRFNVFKQNVMHVHQTNKMDK-PYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVT--SIPSSVDWRKKGS-VTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQGCNGGLMELAFEFIKKKGGVNTEAKYPY 705
            S +E   R ++F  N+    +  + D    +  +  F+D+T  EF   Y      + R   G    G  +  +    S+P S DWRK  S ++ +KDQ  C  CWA +    +E +  I     V +S QEL+DC      GC+GG +  AF  +    G+ +E  YP+
Sbjct:   55 SPEEHAHRLDIFAHNLAQAQRLQEEDLGTAEFGVTPFSDLTEEEFGQLYG-----YRRAAGGVPSMGREIRSEEPEESVPFSCDWRKVASAISPIKDQKNCNCCWAMAAAGNIETLWRISFWDFVDVSVQELLDCGR-CGDGCHGGFVWDAFITVLNNSGLASEKDYPF 217          
BLAST of FC931112 vs. ExPASy Swiss-Prot
Match: CYSP3_CARCN (Cysteine proteinase 3 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.336e-12
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 1
Query:  439 PSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIM 558
            P S+DWRKKG+VT VK+QG CGSCWAFSTIA VEGIN I+
Sbjct:    2 PESIDWRKKGAVTPVKNQGSCGSCWAFSTIATVEGINKIV 41          
BLAST of FC931112 vs. ExPASy Swiss-Prot
Match: CYSP4_CARCN (Cysteine proteinase 4 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.050e-12
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1
Query:  439 PSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMT 561
            P S+DWRKKG+VT VK+QG CGSCWAFSTI  VEGIN I T
Sbjct:    2 PESIDWRKKGAVTPVKNQGSCGSCWAFSTIVTVEGINKIRT 42          
BLAST of FC931112 vs. ExPASy Swiss-Prot
Match: CYSP2_CARCN (Cysteine proteinase 2 (Fragment) OS=Carica candamarcensis PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.050e-12
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1
Query:  439 PSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMT 561
            P SVDWR+KG+VT VKDQ  CGSCWAFST+A VEGIN I+T
Sbjct:    2 PGSVDWRQKGAVTPVKDQNPCGSCWAFSTVATVEGINKIVT 42          
BLAST of FC931112 vs. ExPASy Swiss-Prot
Match: PEPT1_DERPT (Peptidase 1 OS=Dermatophagoides pteronyssinus GN=DERP1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.984e-12
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 1
Query:  439 PSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQGCNGGLMELAFEFIKKKGGVNTEAKYPYXA 711
            P+ +D R+  +VT ++ QG CGSCWAFS +AA E       N+ + L+EQELVDC +    GC+G  +    E+I+  G V  E+ Y Y A
Sbjct:  109 PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCAS--QHGCHGDTIPRGIEYIQHNGVVQ-ESYYRYVA 196          
BLAST of FC931112 vs. ExPASy Swiss-Prot
Match: CATO_MOUSE (Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.203e-12
Identity = 48/152 (31.58%), Postives = 75/152 (49.34%), Query Frame = 1
Query:  307 LNKFADMTNHEFASTYAGSKIKHHRMF--QGTRGNGTFMYGKVTSIPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQGCNGGLMELAFEFIKK-KGGVNTEAKYPYXAMMEHVTFSRKFPSS 753
            +N+F+ +   EF + Y GSK      +  +G R           S+P   DWR K  V  V++Q  CG CWAFS ++A+E    I    L  LS Q+++DC  + N GC GG    A  ++ + +  +  +++YP+ A+       R FP S
Sbjct:   60 VNQFSYLFPEEFKALYLGSKYAWAPRYPAEGQRPIPN------VSLPLRFDWRDKHVVNPVRNQEMCGGCWAFSVVSAIESARAIQGKSLDYLSVQQVIDCSFN-NSGCLGGSPLCALRWLNETQLKLVADSQYPFKAVNGQ---CRHFPQS 201          
The following BLAST results are available for this feature:
BLAST of FC931112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
CATW_HUMAN1.788e-1228.99Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2[more]
CYSP3_CARCN2.336e-1277.50Cysteine proteinase 3 (Fragment) OS=Carica candama... [more]
CYSP4_CARCN3.050e-1275.61Cysteine proteinase 4 (Fragment) OS=Carica candama... [more]
CYSP2_CARCN3.050e-1275.61Cysteine proteinase 2 (Fragment) OS=Carica candama... [more]
PEPT1_DERPT3.984e-1241.76Peptidase 1 OS=Dermatophagoides pteronyssinus GN=D... [more]
CATO_MOUSE5.203e-1231.58Cathepsin O OS=Mus musculus GN=Ctso PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34101E12EF PostHarvP1 Citrus clementina cDNA clone C34101E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931112 ID=FC931112; Name=FC931112; organism=Citrus clementina; type=EST; length=764bp
GATCTTGAGTTGAATCATACTCGTAAGTACCACTTGAAAAAGAAAAAAAA
AGGTTAAAAAATGAAGAGGGTTTATTTATTAGCTGCCTTTTTGCTAGCTT
TGGTTCTGGGAATCGTTGAGGGTTTCGATTTCCATGAGAAGGAGTTGGAA
TCCGAGGAAGGTCTGTGGGATTTATACGAGAGGTGGAGGAGTCATCATAC
GGTTTCAAGGAGTCTTGATGAGAAGCATAAGCGCTTCAATGTGTTCAAGC
AAAATGTTATGCATGTTCACCAAACTAACAAGATGGACAAGCCTTACAAG
TTGAAGCTGAACAAGTTTGCGGACATGACAAATCATGAATTTGCAAGCAC
ATACGCTGGATCAAAGATTAAGCATCACAGGATGTTCCAAGGGACGCGTG
GAAACGGGACCTTCATGTATGGGAAGGTAACGAGTATCCCATCATCAGTC
GATTGGAGGAAGAAAGGGTCTGTCACCGCTGTCAAGGATCAAGGCCAATG
CGGTAGCTGCTGGGCTTTTTCAACAATTGCAGCAGTAGAGGGCATTAATC
ACATTATGACAAATAAGCTCGTTTCTTTGTCTGAGCAAGAGTTAGTTGAT
TGTGACACTGATCAAAACCAAGGATGTAATGGAGGGCTAATGGAATTGGC
ATTTGAGTTCATCAAGAAAAAGGGTGGCGTAAACACAGAGGCTAAGTACC
CTTACCNAGCTATGATGGAACATGTGACGTTTTCAAGGAAGTTCCCCAGC
AGTGTCAATTGACG
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