FC931112

Overview
NameFC931112
Unique NameFC931112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931112 vs. ExPASy Swiss-Prot
Match: CATK_PIG (Cathepsin K OS=Sus scrofa GN=CTSK PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.968e-27
Identity = 74/204 (36.27%), Postives = 112/204 (54.90%), Query Frame = 1
Query:  145 LESEEGLWDLYERWRSHHT--VSRSLDEKHKRFNVFKQNVMHVHQTNKMDK----PYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGT-FMYGKVTSIPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQGCNGGLMELAFEFIKKKGGVNTEAKYPYXAMMEHVTFS 735
            L  EE L   +E W+  +    +  +DE  +R  ++++N+ H+   N         Y+L +N   DMT+ E      G K+        +R N T ++       P S+D+RKKG VT VK+QGQCGSCWAFS++ A+EG     T KL++LS Q LVDC   +N GC GG M  AF++++K  G+++E  YPY    E+  ++
Sbjct:   17 LYPEEILDTQWELWKKTYRKQYNSKVDEISRRL-IWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPPSH----SRSNDTLYIPDWEGRTPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQDENCMYN 214          
BLAST of FC931112 vs. ExPASy Swiss-Prot
Match: P34_SOYBN (P34 probable thiol protease OS=Glycine max PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.357e-27
Identity = 71/199 (35.68%), Postives = 106/199 (53.27%), Query Frame = 1
Query:  127 DFHEKELESEEGLWDLYERWRSHH-TVSRSLDEKHKRFNVFKQNVMHVHQTN---KMDKPYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSIPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQGCNGGLMELAFEFIKKKGGVNTEAKYPYXA 711
            D    +  +++ +  L++ W+S H  V  + +E+ KR  +FK N  ++   N   K    ++L LNKFAD+T  EF+  Y  +     +  +                P+S DWRKKG +T VK QG CG  WAFS   A+E  + I T  LVSLSEQELVDC  ++++G   G    +FE++ + GG+ T+  YPY A
Sbjct:   28 DLDLTKFTTQKQVSSLFQLWKSEHGRVYHNHEEEAKRLEIFKNNSNYIRDMNANRKSPHSHRLGLNKFADITPQEFSKKYLQAPKDVSQQIKMANKKMKKEQYSCDHPPASWDWRKKGVITQVKYQGGCGRGWAFSATGAIEAAHAIATGDLVSLSEQELVDC-VEESEGSYNGWQYQSFEWVLEHGGIATDDDYPYRA 225          
BLAST of FC931112 vs. ExPASy Swiss-Prot
Match: CYSP_TRYBB (Cysteine proteinase OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.357e-27
Identity = 75/176 (42.61%), Postives = 96/176 (54.55%), Query Frame = 1
Query:  187 RSHHTVSRSLDEKHKRFNVFKQNVMHVHQTNKMDKPYK-LKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSIPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQGCNGGLMELAFEFIKKKGGVN--TEAKYPY 705
            + +  V +   E+  RF  F++N M   +      PY    +  F+DMT  EF + Y           +  R       G+    P++VDWR+KG+VT VK QGQCGSCWAFSTI  +EG   +  N LVSLSEQ LV CDT  + GCNGGLM+ AF +I    G N  TEA YPY
Sbjct:   46 KKYGKVYKDAKEEAFRFRAFEEN-MEQAKIQAAANPYATFGVTPFSDMTREEFRARYRNGASYFAAAQKRLRKTVNVTTGRA---PAAVDWREKGAVTPVKVQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDT-IDSGCNGGLMDNAFNWIVNSNGGNVFTEASYPY 216          
BLAST of FC931112 vs. ExPASy Swiss-Prot
Match: CATV_NPVAC (Viral cathepsin OS=Autographa californica nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.357e-27
Identity = 67/171 (39.18%), Postives = 99/171 (57.89%), Query Frame = 1
Query:  220 EKHKRFNVFKQNVMHVHQTNKMDKPYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSI-------PSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQGCNGGLMELAFEFIKKKGGVNTEAKYPYXA 711
            EK +RF +F+ N+  +   N+ D   K ++NKF+D++  E  + Y G  +             T  + KV  +       P   DWR+   VT+VK+QG CG+CWAF+T+A++E    I  N+L++LSEQ+++DCD   + GCNGGL+  AFE I K GGV  E+ YPY A
Sbjct:   44 EKLRRFKIFQHNLNEIINKNQNDSA-KYEINKFSDLSKDETIAKYTGLSLPIQ----------TQNFCKVIVLDQPPGKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLASLESQFAIKHNQLINLSEQQMIDCDF-VDAGCNGGLLHTAFEAIIKMGGVQLESDYPYEA 202          
BLAST of FC931112 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.357e-27
Identity = 69/179 (38.55%), Postives = 97/179 (54.19%), Query Frame = 1
Query:  175 YERWRSHHTVSRSLDEKHKRFNVFKQNVMHVHQTNKMDKPYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSIPSSVDWRKKGSVTA-VKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTD-QNQGCNGGLMELAFEFIKKKGGVNTEAKYPY 705
            +  W   H  + S  E   R  VF  N   +   N+ +  +K+ LN+F+DM+  E    Y  S+ ++    +     GT  Y      PSS+DWRKKG+V + VK+QG CGSCW FST  A+E    I + K+++L+EQ+LVDC  +  N GC GGL   AFE+I    G+  E  YPY
Sbjct:   33 FTSWMKQHQKTYSSREYSHRLQVFANNWRKIQAHNQRNHTFKMGLNQFSDMSFAEIKHKYLWSEPQNCSATKSNYLRGTGPY------PSSMDWRKKGNVVSPVKNQGACGSCWTFSTTGALESAVAIASGKMMTLAEQQLVDCAQNFNNHGCQGGLPSQAFEYILYNKGIMGEDSYPY 205          
BLAST of FC931112 vs. ExPASy Swiss-Prot
Match: CATS_RAT (Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.384e-27
Identity = 76/199 (38.19%), Postives = 109/199 (54.77%), Query Frame = 1
Query:  166 WDLYERWRSHHTVSRSLDEKHKRFNVFKQNV----MHVHQTNKMDKPYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSIPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ---NQGCNGGLMELAFEFIKKKGGVNTEAKYPYXAMMEHVTFSRK 741
            WDL+++ R      ++  E+  R  ++++N+    +H  + +     Y + +N   DMT  E    Y GS     R+ +    +GT       ++P SVDWR+KG VT VK QG CGSCWAFS   A+EG   + T KLVSLS Q LVDC T++   N+GC GG M  AF++I     +++EA YPY AM E   +  K
Sbjct:   26 WDLWKKTRMRRNTDQN--EEDVRRLIWEKNLKFIMLHNLEHSMGMHSYSVGMNHMGDMTPEEVIG-YMGSL----RIPRPWNRSGTLKSSSNQTLPDSVDWREKGCVTNVKYQGSCGSCWAFSAEGALEGQLKLKTGKLVSLSAQNLVDCSTEEKYGNKGCGGGFMTEAFQYIIDT-SIDSEASYPYKAMDEKCLYDPK 216          
BLAST of FC931112 vs. ExPASy Swiss-Prot
Match: CATL1_SHEEP (Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.384e-27
Identity = 59/93 (63.44%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  436 IPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQ-NQGCNGGLMELAFEFIKKKGGVNTEAKYPYXA 711
            +P SVDW KKG VT VK+QGQCGSCWAFS   A+EG     T KLVSLSEQ LVD    Q NQGCNGGLM+ AF++IK+ GG+++E  YPY A
Sbjct:    1 VPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDSSRPQGNQGCNGGLMDNAFQYIKENGGLDSEESYPYEA 93          
BLAST of FC931112 vs. ExPASy Swiss-Prot
Match: CPGP1_ZINOF (Zingipain-1 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.726e-27
Identity = 55/90 (61.11%), Postives = 68/90 (75.56%), Query Frame = 1
Query:  436 IPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQGCNGGLMELAFEFIKKKGGVNTEAKYPY 705
            +P S+DWR+KG+V  VK+QG CGSCWAF  IAAVEGIN I+T  L+SLSEQ+LVDC T +N GC GG    AF++I   GG+N+E  YPY
Sbjct:    3 LPDSIDWREKGAVVPVKNQGGCGSCWAFDAIAAVEGINQIVTGDLISLSEQQLVDCST-RNHGCEGGWPYRAFQYIINNGGINSEEHYPY 91          
BLAST of FC931112 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.726e-27
Identity = 68/174 (39.08%), Postives = 97/174 (55.75%), Query Frame = 1
Query:  208 RSLDEKHKRFNVFKQNVMHVHQTNKMDKPYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSIPS------SVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQGCNGGLMELAFEFIKKKGGVNTEAKYPYXA 711
            +S DEK  R+N+F+ N+  ++Q N  +     K+N+FADM  +E         I+H  +  G  G   F    V   P+      S DWR    +T+VKDQG CG+CW F+++ A+E    I  ++L+ LSEQ+LVDCD   + GC+GGL+  A+E I K GGV  E  Y Y A
Sbjct:   52 KSEDEKKYRYNIFRHNIESINQKNSRNDSAVYKINRFADMPKNEIV-------IRHTGLASGELGLN-FCETIVVDGPAQRQRPVSFDWRSMNKITSVKDQGMCGACWRFASLGALESQYAIKYDRLIDLSEQQLVDCDF-VDMGCDGGLIHTAYEQIMKMGGVEQEFDYSYKA 216          
BLAST of FC931112 vs. ExPASy Swiss-Prot
Match: CATV_NPVOP (Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.726e-27
Identity = 64/172 (37.21%), Postives = 96/172 (55.81%), Query Frame = 1
Query:  211 SLDEKHKRFNVFKQNVMHVHQTNKMDKPYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSI-------PSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTDQNQGCNGGLMELAFEFIKKKGGVNTEAKYPY 705
            S  EK  RF +F+ N+  +   N+ D   + ++NKF+D++  E  S Y G  + H           T  + +V  +       P   DWR+   VT+VK+QG CG+CWAF+T+ ++E    I  N+L++LSEQ+ +DCD   N GC+GGL+  AFE   + GGV  E+ YPY
Sbjct:   41 SESEKLHRFKIFQHNLEEIINKNQNDSTAQYEINKFSDLSKEEAISKYTGLSLPHQ----------TQNFCEVVILDRPPDRGPLEFDWRQFNKVTSVKNQGVCGACWAFATLGSLESQFAIKYNRLINLSEQQFIDCDR-VNAGCDGGLLHTAFESAMEMGGVQMESDYPY 201          
The following BLAST results are available for this feature:
BLAST of FC931112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
CATK_PIG1.968e-2736.27Cathepsin K OS=Sus scrofa GN=CTSK PE=2 SV=1[more]
P34_SOYBN3.357e-2735.68P34 probable thiol protease OS=Glycine max PE=1 SV... [more]
CYSP_TRYBB3.357e-2742.61Cysteine proteinase OS=Trypanosoma brucei brucei P... [more]
CATV_NPVAC3.357e-2739.18Viral cathepsin OS=Autographa californica nuclear ... [more]
CATH_RAT3.357e-2738.55Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
CATS_RAT4.384e-2738.19Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1[more]
CATL1_SHEEP4.384e-2763.44Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1[more]
CPGP1_ZINOF5.726e-2761.11Zingipain-1 OS=Zingiber officinale PE=1 SV=1[more]
CATV_NPVSE5.726e-2739.08Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CATV_NPVOP5.726e-2737.21Viral cathepsin OS=Orgyia pseudotsugata multicapsi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34101E12EF PostHarvP1 Citrus clementina cDNA clone C34101E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931112 ID=FC931112; Name=FC931112; organism=Citrus clementina; type=EST; length=764bp
GATCTTGAGTTGAATCATACTCGTAAGTACCACTTGAAAAAGAAAAAAAA
AGGTTAAAAAATGAAGAGGGTTTATTTATTAGCTGCCTTTTTGCTAGCTT
TGGTTCTGGGAATCGTTGAGGGTTTCGATTTCCATGAGAAGGAGTTGGAA
TCCGAGGAAGGTCTGTGGGATTTATACGAGAGGTGGAGGAGTCATCATAC
GGTTTCAAGGAGTCTTGATGAGAAGCATAAGCGCTTCAATGTGTTCAAGC
AAAATGTTATGCATGTTCACCAAACTAACAAGATGGACAAGCCTTACAAG
TTGAAGCTGAACAAGTTTGCGGACATGACAAATCATGAATTTGCAAGCAC
ATACGCTGGATCAAAGATTAAGCATCACAGGATGTTCCAAGGGACGCGTG
GAAACGGGACCTTCATGTATGGGAAGGTAACGAGTATCCCATCATCAGTC
GATTGGAGGAAGAAAGGGTCTGTCACCGCTGTCAAGGATCAAGGCCAATG
CGGTAGCTGCTGGGCTTTTTCAACAATTGCAGCAGTAGAGGGCATTAATC
ACATTATGACAAATAAGCTCGTTTCTTTGTCTGAGCAAGAGTTAGTTGAT
TGTGACACTGATCAAAACCAAGGATGTAATGGAGGGCTAATGGAATTGGC
ATTTGAGTTCATCAAGAAAAAGGGTGGCGTAAACACAGAGGCTAAGTACC
CTTACCNAGCTATGATGGAACATGTGACGTTTTCAAGGAAGTTCCCCAGC
AGTGTCAATTGACG
back to top