FC931126

Overview
NameFC931126
Unique NameFC931126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2037 contig Ccv1_Contig2037:36..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931126 vs. ExPASy Swiss-Prot
Match: ACTM_HELTB (Actin, cytoskeletal OS=Heliocidaris tuberculata PE=3 SV=1)

HSP 1 Score: 385.185 bits (988), Expect = 1.845e-106
Identity = 187/200 (93.50%), Postives = 194/200 (97.00%), Query Frame = 1 
Query:   76 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTT 675
            +++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTT
Sbjct:    4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTT 203
[Close]
BLAST of FC931126 vs. ExPASy Swiss-Prot
Match: ACTM_HELER (Actin, cytoskeletal OS=Heliocidaris erythrogramma PE=3 SV=1)

HSP 1 Score: 385.185 bits (988), Expect = 1.845e-106
Identity = 187/200 (93.50%), Postives = 194/200 (97.00%), Query Frame = 1 
Query:   76 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTT 675
            +++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGYSFTT
Sbjct:    4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTT 203
[Close]
BLAST of FC931126 vs. ExPASy Swiss-Prot
Match: ACTC_RAT (Actin, alpha cardiac muscle 1 OS=Rattus norvegicus GN=Actc1 PE=1 SV=1)

HSP 1 Score: 385.185 bits (988), Expect = 1.845e-106
Identity = 185/204 (90.69%), Postives = 193/204 (94.61%), Query Frame = 1 
Query:   64 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTT 675
            M D E+   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD LMKILTERGYSF T
Sbjct:    1 MCDDEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVT 204
[Close]
BLAST of FC931126 vs. ExPASy Swiss-Prot
Match: ACTC_MOUSE (Actin, alpha cardiac muscle 1 OS=Mus musculus GN=Actc1 PE=1 SV=1)

HSP 1 Score: 385.185 bits (988), Expect = 1.845e-106
Identity = 185/204 (90.69%), Postives = 193/204 (94.61%), Query Frame = 1 
Query:   64 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTT 675
            M D E+   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD LMKILTERGYSF T
Sbjct:    1 MCDDEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVT 204
[Close]
BLAST of FC931126 vs. ExPASy Swiss-Prot
Match: ACTC_HUMAN (Actin, alpha cardiac muscle 1 OS=Homo sapiens GN=ACTC1 PE=1 SV=1)

HSP 1 Score: 385.185 bits (988), Expect = 1.845e-106
Identity = 185/204 (90.69%), Postives = 193/204 (94.61%), Query Frame = 1 
Query:   64 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTT 675
            M D E+   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD LMKILTERGYSF T
Sbjct:    1 MCDDEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVT 204
[Close]
BLAST of FC931126 vs. ExPASy Swiss-Prot
Match: ACTC_CHICK (Actin, alpha cardiac muscle 1 OS=Gallus gallus GN=ACTC1 PE=3 SV=1)

HSP 1 Score: 385.185 bits (988), Expect = 1.845e-106
Identity = 185/204 (90.69%), Postives = 193/204 (94.61%), Query Frame = 1 
Query:   64 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTT 675
            M D E+   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD LMKILTERGYSF T
Sbjct:    1 MCDDEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVT 204
[Close]
BLAST of FC931126 vs. ExPASy Swiss-Prot
Match: ACTC_BOVIN (Actin, alpha cardiac muscle 1 OS=Bos taurus GN=ACTC1 PE=2 SV=1)

HSP 1 Score: 385.185 bits (988), Expect = 1.845e-106
Identity = 185/204 (90.69%), Postives = 193/204 (94.61%), Query Frame = 1 
Query:   64 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTT 675
            M D E+   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD LMKILTERGYSF T
Sbjct:    1 MCDDEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVT 204
[Close]
BLAST of FC931126 vs. ExPASy Swiss-Prot
Match: ACT3_DICDI (Actin-3 OS=Dictyostelium discoideum GN=act3 PE=3 SV=3)

HSP 1 Score: 385.185 bits (988), Expect = 1.845e-106
Identity = 184/202 (91.09%), Postives = 196/202 (97.03%), Query Frame = 1 
Query:   70 DGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTT 675
            + ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPR+TGVMVGMGQKD+Y+GDEAQS++GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYEGY+LPHAILRLDLAGRDLTD +MKILTERGYSFTT
Sbjct:    2 ESEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRYTGVMVGMGQKDSYIGDEAQSRKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYSLPHAILRLDLAGRDLTDYMMKILTERGYSFTT 203
[Close]
BLAST of FC931126 vs. ExPASy Swiss-Prot
Match: ACT2_XENTR (Actin, alpha sarcomeric/cardiac OS=Xenopus tropicalis PE=2 SV=1)

HSP 1 Score: 385.185 bits (988), Expect = 1.845e-106
Identity = 185/204 (90.69%), Postives = 193/204 (94.61%), Query Frame = 1 
Query:   64 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTT 675
            M D E+   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTD LMKILTERGYSF T
Sbjct:    1 MCDDEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVT 204
[Close]
BLAST of FC931126 vs. ExPASy Swiss-Prot
Match: ACT2_DAUCA (Actin-2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 385.185 bits (988), Expect = 1.845e-106
Identity = 195/208 (93.75%), Postives = 198/208 (95.19%), Query Frame = 1 
Query:   64 MADG-EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIV-GRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYV--AIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTT 675
            MADG EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIV GRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKI HHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYV   +++ LSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD LMKILTERGY FTT
Sbjct:    1 MADGGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKISHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVLSRLRSCLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDGLMKILTERGYMFTT 208
The following BLAST results are available for this feature:
BLAST of FC931126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 472
Match NameE-valueIdentityDescription
ACTM_HELTB1.845e-10693.50Actin, cytoskeletal OS=Heliocidaris tuberculata PE... [more]
ACTM_HELER1.845e-10693.50Actin, cytoskeletal OS=Heliocidaris erythrogramma ... [more]
ACTC_RAT1.845e-10690.69Actin, alpha cardiac muscle 1 OS=Rattus norvegicus... [more]
ACTC_MOUSE1.845e-10690.69Actin, alpha cardiac muscle 1 OS=Mus musculus GN=A... [more]
ACTC_HUMAN1.845e-10690.69Actin, alpha cardiac muscle 1 OS=Homo sapiens GN=A... [more]
ACTC_CHICK1.845e-10690.69Actin, alpha cardiac muscle 1 OS=Gallus gallus GN=... [more]
ACTC_BOVIN1.845e-10690.69Actin, alpha cardiac muscle 1 OS=Bos taurus GN=ACT... [more]
ACT3_DICDI1.845e-10691.09Actin-3 OS=Dictyostelium discoideum GN=act3 PE=3 S... [more]
ACT2_XENTR1.845e-10690.69Actin, alpha sarcomeric/cardiac OS=Xenopus tropica... [more]
ACT2_DAUCA1.845e-10693.75Actin-2 OS=Daucus carota PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34101G04EF PostHarvP1 Citrus clementina cDNA clone C34101G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931126 ID=FC931126; Name=FC931126; organism=Citrus clementina; type=EST; length=702bp
GGAGGCGTCCATTTTGTGCGCCTCGTAATTCGCTCGTTCTCATCTCATAA
CCGGTAGCAGAAGATGGCAGACGGTGAGGATATTCAGCCACTTGTTTGTG
ATAATGGAACAGGAATGGTTAAGGCTGGGTTTGCCGGAGATGATGCTCCA
CGGGCGGTGTTCCCCAGTATTGTTGGTCGTCCACGTCACACTGGTGTGAT
GGTTGGCATGGGTCAGAAGGATGCGTATGTTGGTGATGAGGCTCAATCGA
AGAGAGGTATTTTGACTTTGAAATACCCCATTGAGCATGGTATTGTGAGC
AACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAGCT
TCGTGTTGCCCCTGAAGAGCACCCTGTTCTTCTTACTGAGGCTCCTCTCA
ATCCGAAGGCTAATCGCGAGAAGATGACCCAGATTATGTTTGAGACCTTT
AATGCTCCCGCTATGTATGTTGCCATCCAGGCCGTTCTTTCCTTGTATGC
GAGTGGTCGTACCACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGCC
ATACAGTTCCTATATATGAGGGTTATGCCCTCCCACATGCAATACTTCGT
CTTGACCTTGCTGGTCGTGACCTCACTGATAACTTGATGAAAATCCTCAC
TGAGCGTGGGTACTCTTTCACCACACGGCGGAGCGTGAAATTGTCAGGGA
CA
back to top