FC931128

Overview
NameFC931128
Unique NameFC931128
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931128 vs. ExPASy Swiss-Prot
Match: METE_BIFLI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=metE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.081e-17
Identity = 56/161 (34.78%), Postives = 83/161 (51.55%), Query Frame = 3
Query:   30 LVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSSPRVTNE-RVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEEL 509
            + VST+ SLLH       E  +  E     AFA QK+ E+  +A      +DE   SA  AA  +     RV  +  V +    L  +D+ R      R   Q++ L LP+LPTTTIGSFPQT E+R  R + +  ++++E Y   I  +I+ V++ QEE+
Sbjct:  325 VAVSTASSLLHVPFSTEGETGIPAEDLKHFAFAVQKLGELKEIAALTDATEDEKKSSAALAANQALFDGTRVAADPAVAERIGKLSDADYVRQPAREERQSLQREALGLPLLPTTTIGSFPQTKEIRAERAKLRKGEVTKEAYDEFIASQIDAVIRKQEEI 485          
BLAST of FC931128 vs. ExPASy Swiss-Prot
Match: METE_STAEQ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=metE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.186e-16
Identity = 54/163 (33.13%), Postives = 90/163 (55.21%), Query Frame = 3
Query:   27 KLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSS--PRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEEL 509
            +LV+  S SLLH  V L +E  LD+ I   L+FA +K+ E++AL +          F+ N  ++     +   R  ++  +      +     R +  + R   Q ++LNLP LPTTTIGSFPQT E+R+ R ++K  +I++ EY   ++ EI + +K+QE++
Sbjct:  312 QLVIQPSSSLLHVPVSLDDET-LDESIAEGLSFATEKLDELDALRR---------LFNDNDLSKYEHYKARYERFQSQSFKNLEYDFESVPTHRKSPFAKRKQLQNQRLNLPDLPTTTIGSFPQTREIRKFRADWKNNRITDAEYQEFLQNEIARWIKIQEDI 464          
BLAST of FC931128 vs. ExPASy Swiss-Prot
Match: METE_STRGC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=metE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.549e-16
Identity = 56/163 (34.36%), Postives = 88/163 (53.99%), Query Frame = 3
Query:   24 DKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSSPRV-TNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEEL 509
            + +V+++SCSLLH      NE + +  I +  AFA +K+ E+  L     GQ  E       AA     ++ RV  N  ++   A L  +D+ R    + R   Q++   LP LPTTTIGSFPQT E+R  R  ++  ++S E+Y   + E+I++ +K QEE+
Sbjct:  313 ENIVLTSSCSLLHVPFTTANE-EFEPAILNHFAFAVEKLDEIRDLDAIRNGQGAEAL-----AANKELFATERVGENAELRARIAGLTDADYTRLPAFAEREAIQEEAFKLPALPTTTIGSFPQTKEVRAKRLAFRKGELSAEDYDKFLAEQIDEWIKWQEEV 469          
BLAST of FC931128 vs. ExPASy Swiss-Prot
Match: METE_STAES (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=metE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.549e-16
Identity = 54/163 (33.13%), Postives = 90/163 (55.21%), Query Frame = 3
Query:   27 KLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSS--PRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEEL 509
            +LV+  S SLLH  V L +E  LD+ I   L+FA +K+ E++AL +          F+ N  ++     +   R  ++  +      +     R +  + R   Q ++LNLP LPTTTIGSFPQT E+R+ R ++K  +I++ EY   ++ EI + +K+QE++
Sbjct:  312 QLVIQPSSSLLHVPVSLDDET-LDESIAEGLSFATEKLDELDALRR---------LFNDNDLSKYEHYKARYERFQSQSFKNLEYDFESVPTHRKSPFAKRKQLQNQRLNLPDLPTTTIGSFPQTREVRKFRADWKNNRITDAEYQEFLQNEIARWIKIQEDI 464          
BLAST of FC931128 vs. ExPASy Swiss-Prot
Match: METE_BACA2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bacillus amyloliquefaciens (strain FZB42) GN=metE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.549e-16
Identity = 54/165 (32.73%), Postives = 88/165 (53.33%), Query Frame = 3
Query:   24 DKLVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQK---DEGFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEEL 509
            ++L +  S SLLH  V    +  L+ ++ + L++A +K+ E+  L + L   K    E    + AA +A  K+     N   ++    L   D  R  +   RL  Q + L LP+LPTTTIGSFPQ+ E+R  R++++ K  ++E+Y A I  E  + V +QEE+
Sbjct:  316 EELWIQPSSSLLHVPVAKHPDEHLEKDLLNGLSYAKEKLAELGVLKEGLLSGKAAVSEQIEESKAALKAL-KAFATGANSAQKEELNQLTEKDFSRPASFEERLALQNESLGLPLLPTTTIGSFPQSAEVRSARQKWRKKDWTDEQYQAFINAETKRWVDIQEEI 479          
BLAST of FC931128 vs. ExPASy Swiss-Prot
Match: METE_STAHJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=metE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.023e-16
Identity = 55/162 (33.95%), Postives = 90/162 (55.56%), Query Frame = 3
Query:   30 LVVSTSCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQASRKSS--PRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEEL 509
            +V+  S SLLH  V L +E  L+  I+  L+FA +K+ E++AL +          F+ N +A+  +  +   R  ++  +            R +    R  AQ  +L+LP LPTTTIGSFPQT E+R+ R ++K K+IS+E Y   ++ EI + +K+QE++
Sbjct:  313 IVIQPSSSLLHVPVSLDDET-LEQSIEEGLSFATEKLDELDALRR---------LFNQNDSAKYDKLKARYERFQSQSFKNLEYDFDSVPTSRKSPFPERKKAQDARLHLPDLPTTTIGSFPQTQEVRKYRADWKNKRISDEAYNNFLESEIARWIKIQEDI 464          
BLAST of FC931128 vs. ExPASy Swiss-Prot
Match: METE_BACP2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bacillus pumilus (strain SAFR-032) GN=metE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.311e-15
Identity = 51/157 (32.48%), Postives = 82/157 (52.23%), Query Frame = 3
Query:   45 SCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQKDEGFFSANAAAQA--SRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEEL 509
            S SLLH  V      +L++++ + L++A +K+ E+  L + L         + N A QA  + K   + TN         L   D +R      RL  Q + L LP+LPTTTIGSFPQ+ E+R  R++++  + +  EY   IK+E  + + +QEE+
Sbjct:  323 SSSLLHVPVAKHPSEQLEEKLLNGLSYATEKLAELTTLKEGLTKGAAAIEAAINEAEQALLTLKEFAKGTNADFTAERNNLSSKDFKRPVAFEERLRIQNESLELPLLPTTTIGSFPQSAEVRSARQKWRKNEWTNAEYDEFIKKETKRWIDIQEEI 479          
BLAST of FC931128 vs. ExPASy Swiss-Prot
Match: METE_THEEB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=metE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.508e-15
Identity = 62/164 (37.80%), Postives = 82/164 (50.00%), Query Frame = 3
Query:   45 SCSLLHTAVDLVNENKLDDEIKSWLAFAAQKVVEVNALAKALAGQ---------KDEGFFSANAAAQASRKSSPRVTNERVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPILPTTTIGSFPQTIELRRVRREYKAKKISEEEYVASIKEEINKVVKLQEEL 509
            S SL     D   E KL + ++  L+FA QK+ EV  LA+ L            K+    +  A  +A  + SP   N  VQ     L   D  R      R   Q     LP LPTTTIGSFPQT E+R++R + K  +I++ EY A+I EEI K V+LQEE+
Sbjct:  314 SSSLQFVPYDAKREVKLPEPLRDVLSFAEQKLDEVVLLARVLNSNDGTNREILMKNPELTAIQAQWKAFEQFSP--VNPTVQARLRNLSVRDLERPLPYEQRRTLQP---TLPPLPTTTIGSFPQTAEVRQLRVKLKRHEITQAEYEAAIDEEIAKCVRLQEEV 472          
The following BLAST results are available for this feature:
BLAST of FC931128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 268
Match NameE-valueIdentityDescription
METE_BIFLI9.081e-1734.785-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STAEQ1.186e-1633.135-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STRGC1.549e-1634.365-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STAES1.549e-1633.135-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BACA21.549e-1632.735-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STAHJ2.023e-1633.955-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BACP21.311e-1532.485-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_THEEB6.508e-1537.805-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC34101G07EF PostHarvP1 Citrus clementina cDNA clone C34101G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931128 ID=FC931128; Name=FC931128; organism=Citrus clementina; type=EST; length=514bp
GGGCTTGAGGGTGTCGTTGGCAAGACAAGCTTGTGGTCTCCACCTCCTGC
TCACTTCTTCACACTGCTGTTGATCTTGTTAATGAGAACAAACTCGACGA
TGAAATCAAGTCATGGCTGGCATTTGCTGCCCAGAAAGTTGTTGAAGTGA
ATGCATTGGCCAAGGCTTTGGCTGGCCAAAAGGATGAGGGATTCTTCTCT
GCCAATGCTGCAGCTCAGGCTTCAAGAAAGTCCTCCCCGAGAGTGACCAA
TGAGAGAGTTCAAAAGGCTGCTGCTGCTTTGAAGGGATCAGACCACAGAC
GTGCTACAAACGTTAGTGCTAGATTGGATGCTCAACAGAAGAAGCTCAAT
CTTCCAATCCTCCCAACCACCACAATTGGATCCTTCCCACAAACCATTGA
ACTTAGGAGAGTCCGCCGTGAATACAAGGCTAAGAAGATTTCTGAGGAAG
AATATGTTGCTTCCATCAAGGAGGAAATCAACAAGGTTGTCAAACTCCAA
GAAGAGCTTGATAT
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