FC931130

Overview
NameFC931130
Unique NameFC931130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931130 vs. ExPASy Swiss-Prot
Match: CHI2_COCP7 (Endochitinase 2 OS=Coccidioides posadasii (strain C735) GN=CTS2 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 58/208 (27.88%), Postives = 90/208 (43.27%), Query Frame = 1
Query:  127 ISVYWGQNGNEGSLADACSSGNYGIVNIAFLSTF---GNGQTPQINLAGHCDPTN------------NGCAGLSNEIKTCQ--GQGIKVXXXXXXXXXXXXXXXXXXXRQVAQFLWDHF---LGGQSSSRPLGDAVLDGIDFDIEGGSNQYWDELARALSNFSQQ---KKVYLAAAPQCPYPDAWLGGALGTGLFDYVWVQFXFNPPC 681
            ++VYWGQ   +  L+  C   ++ I+ + F++ F   G    P  N    C  +             +GC  +  ++  C+  G+ I +                      A FLW  F       +  RP G+A +DG DFDIE GSN  +  + R L     Q    + Y++AAPQC  PD +L  A+    FD++++QF  NP C
Sbjct:   31 LAVYWGQGAGQNRLSYFCEKTSFDIIVVGFINVFPDQGPAGWPGSNFGNQCADSYYYTKNGTKTKLLDGCYQIKEDLPKCKALGKTILLSLGGGAVHDFYEVKSEESALNFADFLWGAFGPLTPDWTGPRPFGEASVDGFDFDIEKGSNFGYSIMVRRLRELFLQDPLNRYYISAAPQCIMPDKYLSHAISNSAFDFIFIQFYNNPSC 238          
BLAST of FC931130 vs. ExPASy Swiss-Prot
Match: CHI2_COCIM (Endochitinase 2 OS=Coccidioides immitis GN=CTS2 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 58/208 (27.88%), Postives = 90/208 (43.27%), Query Frame = 1
Query:  127 ISVYWGQNGNEGSLADACSSGNYGIVNIAFLSTF---GNGQTPQINLAGHCDPTN------------NGCAGLSNEIKTCQ--GQGIKVXXXXXXXXXXXXXXXXXXXRQVAQFLWDHF---LGGQSSSRPLGDAVLDGIDFDIEGGSNQYWDELARALSNFSQQ---KKVYLAAAPQCPYPDAWLGGALGTGLFDYVWVQFXFNPPC 681
            ++VYWGQ   +  L+  C   ++ I+ + F++ F   G    P  N    C  +             +GC  +  ++  C+  G+ I +                      A FLW  F       +  RP G+A +DG DFDIE GSN  +  + R L     Q    + Y++AAPQC  PD +L  A+    FD++++QF  NP C
Sbjct:   31 LAVYWGQGAGQNRLSYFCEKTSFDIIVVGFINVFPDQGPAGWPGSNFGNQCADSYYYTKNGTKTKLLDGCYQIKEDLPKCKALGKTILLSLGGGAVHDFYEVKSEESALNFADFLWGAFGPLTPDWTGPRPFGEASVDGFDFDIEKGSNFGYSIMVRRLRELFLQDPLNRYYISAAPQCIMPDKYLSHAISNSAFDFIFIQFYNNPSC 238          
BLAST of FC931130 vs. ExPASy Swiss-Prot
Match: CHLY_PARTH (Bifunctional chitinase/lysozyme (Fragment) OS=Parthenocissus quinquefolia PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 1
Query:  121 GVISVYWGQNGNEGSLADACSSGNYGIVNIAFLSTFGNGQTPQINLA 261
            G I++YWGQNGNEG+L   C++G Y  VNIAFL+ FGNGQTP+INLA
Sbjct:    1 GGIAIYWGQNGNEGTLTQTCNTGKYSYVNIAFLNKFGNGQTPEINLA 47          
BLAST of FC931130 vs. ExPASy Swiss-Prot
Match: YKT4_SCHPO (Chitinase-like protein PB1E7.04c OS=Schizosaccharomyces pombe GN=SPAPB1E7.04c PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 49/197 (24.87%), Postives = 81/197 (41.12%), Query Frame = 1
Query:  112 TSAGVISVYWGQN--GNEGS-----LADACSSGNYGIVNIAFLSTFGNGQTPQINLAGHCDPTNN-------GCAGLSNEIKTCQGQGIKVXXXXXXXXXXXXXXXXXXXRQVAQFLWDHFLGGQSSSRPLGDAVLDGIDFDIEGGSNQYWDELARALSNF---SQQKKVYLAAAPQCPYPDAWLGGALGTGLFDYV 651
            T+   +  YWG N  G  G      L+  C +  Y  + ++ +  F     P  + +  C  ++         C  +  +I+ CQ  GIKV                      A  +W+ F  G+ S RP G AV+DG D ++  G+N  +   A+ +        ++K Y++AAP C  PD  L  A+    FD++
Sbjct:   23 TNQTAVLGYWGSNLAGKMGDRDQKRLSSYCQNTTYDAIILSSVIDFNVDGWPVYDFSNLCSDSDTFSGSELKKCPQIETDIQVCQENGIKVLLSIGGYNGNFSLNNDDDGTNFAFQVWNIFGSGEDSYRPFGKAVVDGFDLEVNKGTNTAYSAFAKRMLEIYASDPRRKYYISAAPTCMVPDHTLTKAISENSFDFL 219          
The following BLAST results are available for this feature:
BLAST of FC931130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
CHI2_COCP75.326e-1827.88Endochitinase 2 OS=Coccidioides posadasii (strain ... [more]
CHI2_COCIM5.326e-1827.88Endochitinase 2 OS=Coccidioides immitis GN=CTS2 PE... [more]
CHLY_PARTH1.773e-1368.09Bifunctional chitinase/lysozyme (Fragment) OS=Part... [more]
YKT4_SCHPO2.560e-1224.87Chitinase-like protein PB1E7.04c OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionC34101G09EF PostHarvP1 Citrus clementina cDNA clone C34101G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931130 ID=FC931130; Name=FC931130; organism=Citrus clementina; type=EST; length=690bp
GAACGAATGTTAAGCCAAGCACTATTAAGCCATAAGCACACGATGGCGCA
TCAGTTTACTCTCGGAAAATTCCTGTTCTGCCTGTTGCAGCTGGCTGCCC
TGTTCACTTACACCAGTGCTGGTGTGATCTCAGTGTACTGGGGTCAGAAC
GGAAATGAAGGAAGTTTGGCAGATGCTTGTTCGTCCGGCAATTATGGAAT
TGTGAACATCGCTTTCCTATCCACATTTGGCAATGGCCAGACTCCGCAAA
TCAACCTAGCTGGCCACTGCGACCCGACCAATAATGGTTGCGCCGGGTTG
AGCAATGAAATAAAAACTTGCCAGGGCCAAGGCATCAAGGTCTTGCTCTC
CATTGGAGGTGCTTCCGGAAGCTATTCCCTTTCCTCTGCTGATGACGCCA
GGCAAGTCGCACAATTCTTGTGGGACCATTTTCTTGGAGGCCAATCAAGC
TCCCGGCCATTAGGTGATGCAGTTTTAGATGGAATCGATTTCGATATTGA
GGGAGGCTCAAACCAATACTGGGACGAACTAGCCAGGGCCTTGTCAAATT
TTAGCCAACAGAAGAAGGTTTACTTAGCAGCAGCTCCACAATGTCCGTAC
CCTGATGCATGGCTTGGCGGTGCACTAGGAACTGGCTTATTTGATTACGT
TTGGGTCCAATTCTANTTCAATCCTCCTTGTCAGTATTCC
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