FC931132

Overview
NameFC931132
Unique NameFC931132
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EF1A_PICTO (Elongation factor 1-alpha OS=Picrophilus torridus GN=tuf PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.527e-68
Identity = 126/230 (54.78%), Postives = 170/230 (73.91%), Query Frame = 2
Query:    8 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            KYY T+IDAPGHRDF+KNMITGTSQAD AVL++ +  G    G+    QT+EHA LA TLGV Q+I   NKMDAT P YS+ R++E+  E++  L  +G+  + VP +P+SG++GDN+++ S NL W+KGPTL++AL+ +  P +P DKPLRLP++DVY I GIGTVPVGR+ETGV+K G  V F P+    +VKS+EMHHE +Q+A PG+++GF    +A  +LKRG V
Sbjct:   84 KYYFTIIDAPGHRDFVKNMITGTSQADAAVLVVSAREG---EGVM--AQTKEHAFLARTLGVPQLIAVVNKMDATQPPYSEKRFNEVKDEITKLLTPIGF--KNVPIIPLSGYKGDNIMKPSPNLSWWKGPTLMEALNALQVPAKPVDKPLRLPVEDVYSITGIGTVPVGRIETGVMKVGDKVIFMPANKAGDVKSIEMHHEPMQQAGPGDNIGFNVRGIAKNELKRGDV 306          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EF1A_METMJ (Elongation factor 1-alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=tuf PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.527e-68
Identity = 122/230 (53.04%), Postives = 168/230 (73.04%), Query Frame = 2
Query:    8 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            KYY TV+D PGHRDF+KNMITG SQAD A+L++ +  G  E       QT+EH  L+ TLG+ Q+I   NKMDA   KY + RY+E+ +++S  LK VGY P+ + F+P+S F GDN+ ++S N  WYKGPT+LDAL+ ++EP++P++ P+RLP+QDVY I GIGTVPVGRVETG++K GM V+F P+    E+KS+EMHHE + +ALPG++VGF    +   D++RG V
Sbjct:   84 KYYFTVVDCPGHRDFVKNMITGASQADAALLVVAAPDGVME-------QTKEHVFLSRTLGINQLIIGINKMDAA--KYDEKRYNEVKEQLSQLLKMVGYKPDDISFIPMSAFVGDNIAKKSENTPWYKGPTVLDALNALSEPEKPTNLPMRLPIQDVYSISGIGTVPVGRVETGIMKKGMKVSFMPANKEGEIKSIEMHHEEIPQALPGDNVGFNVRGIGKGDIRRGDV 304          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EF1A_SULAC (Elongation factor 1-alpha OS=Sulfolobus acidocaldarius GN=tuf PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.579e-68
Identity = 119/231 (51.52%), Postives = 162/231 (70.13%), Query Frame = 2
Query:    8 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFVA 700
            KY+ TVIDAPGHRDF+KNMITG SQAD A+L++ +  G +EAG+S +GQTREH +L+ T+G+ Q+I   NKMD     Y + R+ EIV  VS ++K  G++  KV FVP+   +GDN+  +ST + WY GPTL + LD +  P +P DKPLR+P+Q+VY I G+G VPVGR+E+GVLK G  + F P G   EV+S+E HH  + +A PG+++GF    V  KD+KRG VA
Sbjct:   83 KYFFTVIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSAEGQTREHIILSKTMGINQVIVAINKMDLADTPYDEKRFKEIVDTVSKFMKSFGFDMNKVKFVPVVAPDGDNVTHKSTKMPWYNGPTLEELLDQLEIPPKPVDKPLRIPIQEVYSISGVGVVPVGRIESGVLKVGDKIVFMPVGKIGEVRSIETHHTKIDKAEPGDNIGFNVRGVEKKDVKRGDVA 313          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EF1A_METTP (Elongation factor 1-alpha OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=tuf PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 9.899e-68
Identity = 120/230 (52.17%), Postives = 163/230 (70.87%), Query Frame = 2
Query:    8 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            KYY TV+D PGHRDF+KNMITG SQAD AVL++ +  G          QT+EH  LA TLGV Q+I   NKMDAT P Y + RY+E+ +EV   L+ VGY  ++VPF+P+S + GDN+++ S    WY GPT+LDAL+ + EP++P + PLR+P+QDVY I G+GTVPVGRVETGVLK G  V F P+ ++ EVKS+E+HH+ + EA PG+++G+    +   D++RG V
Sbjct:   84 KYYFTVVDCPGHRDFVKNMITGASQADAAVLVVAAPDGVM-------AQTKEHVFLARTLGVNQLIVAINKMDATEPPYDEKRYNEVKEEVGKLLRMVGYKIDEVPFIPVSAYNGDNVVKHSDRTKWYTGPTVLDALNALKEPQKPVNLPLRIPVQDVYSISGVGTVPVGRVETGVLKKGDKVIFEPAHVSGEVKSIEIHHQEIPEAYPGDNIGWNVRGIGKNDIRRGDV 306          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EF1A_METJA (Elongation factor 1-alpha OS=Methanocaldococcus jannaschii GN=tuf PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 9.899e-68
Identity = 125/231 (54.11%), Postives = 169/231 (73.16%), Query Frame = 2
Query:    8 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKV-GYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            KY  T++D PGHRDFIKNMITG SQAD AVL++D      + GI    QTREH  LA TLG+KQ+    NKMD  T  YS+  Y+++ K +S  L KV GYNP+++ F+P +  +GDN+++RS N+ WYKGPTL++ALD    P++P++ PLR+P+QDVY I G+GTVPVGRVETG+L+PG  V F P+G++ EVKS+EMHHE + +A PG+++GF    V+ KD+KRG V
Sbjct:   84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVDVNDA--KTGIQP--QTREHMFLARTLGIKQIAVAINKMD--TVNYSQEEYEKMKKMLSEQLLKVLGYNPDQIDFIPTASLKGDNVVKRSENMPWYKGPTLVEALDKFQPPEKPTNLPLRIPIQDVYSITGVGTVPVGRVETGILRPGDKVVFEPAGVSGEVKSIEMHHEQIPQAEPGDNIGFNVRGVSKKDIKRGDV 308          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EF1A_METKA (Elongation factor 1-alpha OS=Methanopyrus kandleri GN=tuf PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.205e-67
Identity = 124/237 (52.32%), Postives = 166/237 (70.04%), Query Frame = 2
Query:   11 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTT-------EVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFVA 700
            Y  T++D PGHRDF+KNMITG SQAD A+L++ +  G          QT+EHA LA TLG+ Q+I   NKMD     Y + RY+E+ +EV+  LK +GYN +++PF+PIS FEGDN++E+S N  WY GPTLL+ALDN+  P++P+DKPLR+P+QDVY I G+GTVPVGRVETGVL+ G  V F P+   T       EV+S+EMHHE ++ A PG+++GF  + V   D+ RG VA
Sbjct:   75 YEFTIVDCPGHRDFVKNMITGASQADAAILVVAADDGVMP-------QTKEHAFLAKTLGIDQLIVAINKMDLVD--YDENRYEEVKQEVAELLKTIGYNVDEIPFIPISAFEGDNVVEKSDNTPWYDGPTLLEALDNLEPPEKPTDKPLRIPIQDVYSITGVGTVPVGRVETGVLEVGDTVRFEPAYTATGGRKGEGEVRSIEMHHEEIERAEPGDNIGFNVKGVGKNDISRGDVA 302          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EF1A_THEPD (Elongation factor 1-alpha OS=Thermofilum pendens (strain Hrk 5) GN=tuf PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.880e-67
Identity = 127/232 (54.74%), Postives = 161/232 (69.40%), Query Frame = 2
Query:    8 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTN-LDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFVA 700
            KY+ T+IDAPGHRDF+KNMITG SQAD A+L++ +  G FEAGIS  GQTREH  LA T+GV Q++   NKMD  T  YSK RY+EI  ++   L+ VGY  +++PF+P S +EG N+ +R+     WY GP L +A D   EP RP DKPLR+P+QDVY I G+GTVPVGRVETGVLK G  +   P     EVKS+E HH  LQEA+PG+++GF  + V    L+RG VA
Sbjct:   84 KYFFTLIDAPGHRDFVKNMITGASQADVALLVVSAKEGEFEAGISPAGQTREHVFLAKTMGVDQLVVAINKMD--TVNYSKERYEEIKNQLIRLLRMVGYKVDEIPFIPTSAWEGVNVSKRTPEKTPWYDGPCLYEAFDFFKEPPRPIDKPLRIPIQDVYSIKGVGTVPVGRVETGVLKVGDKIIINPPKAVGEVKSIETHHTPLQEAIPGDNIGFNVKGVEKSQLRRGDVA 313          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EF1A_METLZ (Elongation factor 1-alpha OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=tuf PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.880e-67
Identity = 124/230 (53.91%), Postives = 159/230 (69.13%), Query Frame = 2
Query:    8 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            KY  TV+D PGHRDF+KNMITG SQAD A++++  T G  E       QT+EH  L+ TLG+ Q+I   NKMDA    YS+ +Y+E   +++  +  VG+ P + PF+PIS F GDN+ E S N  WYKGPTLL ALD    P  P+DKPLRLP+QDVY I G+GTVPVGRVETG+LK G  ++F P+ +T EVKS+EMHHE   EALPG++VGF    +A  D++RG V
Sbjct:   84 KYNFTVVDCPGHRDFVKNMITGASQADAAIIVVSGTEGPME-------QTKEHVFLSKTLGINQIIVAINKMDAVN--YSEEKYNEAKDKMTKLIMSVGFKPAETPFIPISAFCGDNIKEASANTPWYKGPTLLAALDLFKMPDMPTDKPLRLPIQDVYTISGVGTVPVGRVETGILKKGQKISFMPANVTGEVKSIEMHHEEFPEALPGDNVGFNVRGIAKNDVRRGDV 304          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EF1A_METHJ (Elongation factor 1-alpha OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=tuf PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.913e-67
Identity = 121/230 (52.61%), Postives = 162/230 (70.43%), Query Frame = 2
Query:    8 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            KYY TV+D PGHRDF+KNMITG SQAD AV+++ +  G  E       QT+EH  L+ TLG+KQ+I   NKMDA    Y +AR++++  +V + LK VG NP+ V F+PIS FEGDN+ + S  + WYKG TL   LD +  P +P++KPLR+P+QD Y I GIGTVPVGRVETG+LK GM VTF P+  + EVKS+EMHHE + +A+PG+++GF    +   D++RG V
Sbjct:   84 KYYFTVVDCPGHRDFVKNMITGASQADAAVIVVAAPDGVME-------QTKEHVFLSKTLGIKQLIVAVNKMDAAN--YDEARFNQVKSDVGALLKMVGTNPDTVKFIPISAFEGDNITKNSDKMPWYKGKTLFGLLDELEVPDKPTEKPLRVPIQDAYSISGIGTVPVGRVETGILKKGMNVTFMPANKSGEVKSIEMHHEEIPQAVPGDNIGFNVRGIGKDDVRRGDV 304          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EF1A_METBU (Elongation factor 1-alpha OS=Methanococcoides burtonii (strain DSM 6242) GN=tuf PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.416e-67
Identity = 123/230 (53.48%), Postives = 158/230 (68.70%), Query Frame = 2
Query:    8 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            KYY TV+D PGHRDF+KNMITG SQAD AVL++ +  G          QT+EH  L+ TLG+ Q+I   NKMDA   KYS+ RY+E+ KEVS  L  VG+  + VPF+P S FEGDN+ + S N  WY GP LL+ L+N+  P +P   PLR+P+QD Y I GIGTVPVGRVETG++K G  VTF PSG T EVKS+EMHHE   +A+PG+++G+    +   D++RG V
Sbjct:   83 KYYFTVVDCPGHRDFVKNMITGASQADAAVLVVAAPDGVM-------AQTKEHVFLSRTLGINQLIVAINKMDAA--KYSEDRYNEVKKEVSQLLGMVGFKADDVPFIPTSAFEGDNITKSSANTPWYTGPALLECLNNLTVPSKPDTLPLRIPVQDAYTISGIGTVPVGRVETGIMKKGQKVTFMPSGATGEVKSIEMHHEEWDQAVPGDNIGWNVRGIGKNDVRRGDV 303          
The following BLAST results are available for this feature:
BLAST of FC931132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_PICTO1.527e-6854.78Elongation factor 1-alpha OS=Picrophilus torridus ... [more]
EF1A_METMJ1.527e-6853.04Elongation factor 1-alpha OS=Methanoculleus marisn... [more]
EF1A_SULAC7.579e-6851.52Elongation factor 1-alpha OS=Sulfolobus acidocalda... [more]
EF1A_METTP9.899e-6852.17Elongation factor 1-alpha OS=Methanosaeta thermoph... [more]
EF1A_METJA9.899e-6854.11Elongation factor 1-alpha OS=Methanocaldococcus ja... [more]
EF1A_METKA2.205e-6752.32Elongation factor 1-alpha OS=Methanopyrus kandleri... [more]
EF1A_THEPD2.880e-6754.74Elongation factor 1-alpha OS=Thermofilum pendens (... [more]
EF1A_METLZ2.880e-6753.91Elongation factor 1-alpha OS=Methanocorpusculum la... [more]
EF1A_METHJ4.913e-6752.61Elongation factor 1-alpha OS=Methanospirillum hung... [more]
EF1A_METBU6.416e-6753.48Elongation factor 1-alpha OS=Methanococcoides burt... [more]

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Properties
Property NameValue
Genbank descriptionC34101G11EF PostHarvP1 Citrus clementina cDNA clone C34101G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931132 ID=FC931132; Name=FC931132; organism=Citrus clementina; type=EST; length=704bp
GAACACCAAGTACTACTGCACCGTCATTGATGCTCCCGGACATCGTGACT
TTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGTCCTC
ATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGG
TCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGA
TGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAGTATTCAAAG
GCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGT
TGGATACAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGG
GTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCA
ACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTCAGA
CAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTG
GAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTGGTATG
GTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCTGTTGA
GATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGAACATGTTGGCT
TCAAACGTGAAGACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCT
TCCA
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