FC931132

Overview
NameFC931132
Unique NameFC931132
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EF1A_METM5 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=tuf PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.116e-62
Identity = 117/231 (50.65%), Postives = 157/231 (67.97%), Query Frame = 2
Query:    8 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL-KKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            KY  T++D PGHRDFIKNMITG SQAD A+L+++      ++GI    QTREH  L+ TLG+ Q+    NKMD  T  +S+A Y+E+ K +   L K VG+NP+ + FVP++   GDN+ ++S    WY GPTL + +D    P++P+  PLRLP+QDVY I G+GTVPVGRVETG++KPG  V F P+G   E+K+VEMHHE L  A PG+++GF    V  KD+KRG V
Sbjct:   84 KYEVTIVDCPGHRDFIKNMITGASQADAAILVVNVDDA--KSGIQP--QTREHVFLSRTLGISQLAVAINKMD--TVNFSEADYNEMKKMLGDQLLKMVGFNPDNITFVPVASLHGDNVFKKSDKTPWYNGPTLAEVIDAFQPPEKPTTLPLRLPIQDVYSITGVGTVPVGRVETGIIKPGDKVIFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDV 308          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.808e-61
Identity = 116/231 (50.22%), Postives = 157/231 (67.97%), Query Frame = 2
Query:    8 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL-KKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            KY  T++D PGHRDFIKNMITG SQAD A+L+++      ++GI    QTREH  L+ TLG+ Q+    NKMD  T  +S+A Y+E+ K +   L K VG+NP+ + FVP++   GDN+ ++S    WY GPTL + +D    P++P+  PLRLP+QDVY I G+GTVPVGRVETG+++PG  V F P+G   E+K+VEMHHE L  A PG+++GF    V  KD+KRG V
Sbjct:   84 KYEVTIVDCPGHRDFIKNMITGASQADAAILVVNVDDA--KSGIQP--QTREHVFLSRTLGISQLAVAINKMD--TVNFSEADYNEMKKMLGDQLLKMVGFNPDNITFVPVASLHGDNVFKKSDKTPWYNGPTLAEVIDAFQPPEKPTTLPLRLPIQDVYSITGVGTVPVGRVETGIIRPGDKVIFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDV 308          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EF1A_METM6 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=tuf PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.808e-61
Identity = 117/231 (50.65%), Postives = 156/231 (67.53%), Query Frame = 2
Query:    8 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYL-KKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            KY  T++D PGHRDFIKNMITG SQAD A+L+++      ++GI    QTREH  L+ TLG+ Q+    NKMD  T  +S+A Y+E+ K +   L K VG+NP  + FVP++   GDN+ ++S    WY GPTL + +D    P++P+  PLRLP+QDVY I G+GTVPVGRVETG++KPG  V F P+G   E+K+VEMHHE L  A PG+++GF    V  KD+KRG V
Sbjct:   84 KYEVTIVDCPGHRDFIKNMITGASQADAAILVVNVDDA--KSGIQP--QTREHVFLSRTLGISQLAVAINKMD--TVNFSEADYNEMKKMLGDQLLKMVGFNPANITFVPVASLHGDNVFKKSDRTPWYNGPTLAEVIDAFQPPEKPTTLPLRLPIQDVYSITGVGTVPVGRVETGIIKPGDKVIFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDV 308          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EF1A_UNCMA (Elongation factor 1-alpha OS=Uncultured methanogenic archaeon RC-I GN=tuf PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.817e-60
Identity = 112/234 (47.86%), Postives = 157/234 (67.09%), Query Frame = 2
Query:    8 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPS----GLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            KYY TV+D PGHRDF+KNMITG SQAD A+L+  +  G  +       QT+EH  L+ TLG+ Q+I   NKMDA    Y + RY+E+ +EVS  L+ +G+ P+++PF+P S F+G N+ + +    WY G T+L+AL+ + EP++P+  PLR+P+QDVY I GIG VPVGRVETG++K G  V F P     G   EVKS+EMHHE + +ALPG+++GF    +    ++RG V
Sbjct:   84 KYYFTVVDCPGHRDFVKNMITGASQADAAILVCAAPDGVMQ-------QTKEHIFLSKTLGINQLIIAVNKMDAIN--YDQKRYNEVKEEVSKILRMIGFKPDQIPFIPTSAFKGTNIAKHAEETPWYTGVTILEALNALKEPEKPTQLPLRVPIQDVYTISGIGLVPVGRVETGIMKKGDKVIFRPGIDGVGHAGEVKSIEMHHEEIPQALPGDNIGFNVRGIEKNLIRRGDV 308          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EF1A_HALSA (Elongation factor 1-alpha OS=Halobacterium salinarium GN=tuf PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.433e-58
Identity = 112/230 (48.70%), Postives = 152/230 (66.09%), Query Frame = 2
Query:    8 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            +Y  T++D PGHRDF+KNMITG SQAD AVL++ +  G          QTREH  L+ TLG+ ++I   NKMD     Y +++Y+E+V  V     +VG+NP+   F+  S FEGDN+ + S N  WY GPTLL+AL+ +  P+ P+D  LRLP+QDVY I GIGTVPVGR+ETGV+  G  V+F PS +  EVK++EMHHE +  A PG++VGF    +   D++RG V
Sbjct:   83 EYEFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDGVAP-------QTREHVFLSRTLGIDELIVAVNKMDVVD--YDESKYNEVVSGVKDLFGQVGFNPDDAKFIATSAFEGDNVSDHSDNTPWYDGPTLLEALNGLPVPQPPTDADLRLPIQDVYTISGIGTVPVGRIETGVMNTGDNVSFQPSDVGGEVKTIEMHHEEVPNAEPGDNVGFNVRGIGKDDIRRGDV 303          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EF1A_HALS3 (Elongation factor 1-alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=tuf PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.433e-58
Identity = 112/230 (48.70%), Postives = 152/230 (66.09%), Query Frame = 2
Query:    8 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            +Y  T++D PGHRDF+KNMITG SQAD AVL++ +  G          QTREH  L+ TLG+ ++I   NKMD     Y +++Y+E+V  V     +VG+NP+   F+  S FEGDN+ + S N  WY GPTLL+AL+ +  P+ P+D  LRLP+QDVY I GIGTVPVGR+ETGV+  G  V+F PS +  EVK++EMHHE +  A PG++VGF    +   D++RG V
Sbjct:   83 EYEFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDGVAP-------QTREHVFLSRTLGIDELIVAVNKMDVVD--YDESKYNEVVSGVKDLFGQVGFNPDDAKFIATSAFEGDNVSDHSDNTPWYDGPTLLEALNGLPVPQPPTDADLRLPIQDVYTISGIGTVPVGRIETGVMNTGDNVSFQPSDVGGEVKTIEMHHEEVPNAEPGDNVGFNVRGIGKDDIRRGDV 303          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EF1A_HALMA (Elongation factor 1-alpha OS=Haloarcula marismortui GN=tuf PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.433e-58
Identity = 114/229 (49.78%), Postives = 153/229 (66.81%), Query Frame = 2
Query:   11 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            Y  T++D PGHRDF+KNMITG SQAD AVL++ +  G          QT+EH  LA TLG+ ++I   NKMD     Y ++ Y ++V+EV   L +V ++ E   F+P+S FEGDN+ E S +  WY G  LL+AL+ +  P+ P+D PLRLP+QDVY I GIGTVPVGRVETG+L  G  V+F PS ++ EVK+VEMHHE + +A PG++VGF    V   D++RG V
Sbjct:   84 YDFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDG-------VQPQTQEHVFLARTLGIGELIVAVNKMDLVD--YGESEYKQVVEEVKDLLTQVRFDSENAKFIPVSAFEGDNIAEESEHTGWYDGEILLEALNELPAPEPPTDAPLRLPIQDVYTISGIGTVPVGRVETGILNTGDNVSFQPSDVSGEVKTVEMHHEEVPKAEPGDNVGFNVRGVGKDDIRRGDV 303          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EF1A_NANEQ (Elongation factor 1-alpha OS=Nanoarchaeum equitans GN=tuf PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.358e-55
Identity = 110/234 (47.01%), Postives = 152/234 (64.96%), Query Frame = 2
Query:   14 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKV-PFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG----MVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFVA 700
            Y T++DAPGH+DF+KNMITG SQAD AVL++ +  G  E       QT+EHA+LA T G+ Q+I   NKMD     Y + R++E+  +V   LK +GY  E +   +P + F GDN++++S  + WY GPTL +ALD +  P+ P D PLR+P+Q    I GIGTV  GRVETG LKPG    ++ +  P+G   EVKS+EMHH+ L+EALPG+++GF    +   D+ RG VA
Sbjct:   86 YITIVDAPGHKDFVKNMITGASQADAAVLVVAADDGVQE-------QTQEHAVLARTFGINQIIVYINKMDKVN--YDQKRFEEVKNQVLKLLKMIGYKDENIIAVIPGASFHGDNVVKKSDKMPWYNGPTLYEALDMLKPPQLPVDLPLRIPIQSALSIKGIGTVLTGRVETGKLKPGDKIIVLPSKKPNGAIGEVKSIEMHHKPLEEALPGDNIGFSVRGIEKGDVMRGDVA 310          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: HBS1L_PONAB (HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.426e-44
Identity = 91/212 (42.92%), Postives = 129/212 (60.85%), Query Frame = 2
Query:   20 TVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLD---WYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHV 646
            T++DAPGH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    V F+P SG  G+N+I RS + +   WYKG  LL+ +D+   P+R  DKP RL + DV+K  G G    G++E G ++ G  +   P   T  VK + +H E +  A  G+HV
Sbjct:  341 TLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLITRSRSSELTKWYKGLCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCITGKIEAGYIQTGDRLLAMPPNETCTVKGITLHDEPVDWAAAGDHV 550          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: HBS1L_HUMAN (HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.474e-44
Identity = 91/212 (42.92%), Postives = 129/212 (60.85%), Query Frame = 2
Query:   20 TVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLD---WYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHV 646
            T++DAPGH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    V F+P SG  G+N+I RS + +   WYKG  LL+ +D+   P+R  DKP RL + DV+K  G G    G++E G ++ G  +   P   T  VK + +H E +  A  G+HV
Sbjct:  341 TLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVGFIPTSGLSGENLITRSQSSELTKWYKGLCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCITGKIEAGYIQTGDRLLAMPPNETCTVKGITLHDEPVDWAAAGDHV 550          
The following BLAST results are available for this feature:
BLAST of FC931132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_METM58.116e-6250.65Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM71.808e-6150.22Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM61.808e-6150.65Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_UNCMA5.817e-6047.86Elongation factor 1-alpha OS=Uncultured methanogen... [more]
EF1A_HALSA1.433e-5848.70Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_HALS31.433e-5848.70Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_HALMA1.433e-5849.78Elongation factor 1-alpha OS=Haloarcula marismortu... [more]
EF1A_NANEQ7.358e-5547.01Elongation factor 1-alpha OS=Nanoarchaeum equitans... [more]
HBS1L_PONAB3.426e-4442.92HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV... [more]
HBS1L_HUMAN4.474e-4442.92HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC34101G11EF PostHarvP1 Citrus clementina cDNA clone C34101G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931132 ID=FC931132; Name=FC931132; organism=Citrus clementina; type=EST; length=704bp
GAACACCAAGTACTACTGCACCGTCATTGATGCTCCCGGACATCGTGACT
TTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGTCCTC
ATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGG
TCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGA
TGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAGTATTCAAAG
GCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGT
TGGATACAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGG
GTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCA
ACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTCAGA
CAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTG
GAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTGGTATG
GTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCTGTTGA
GATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGAACATGTTGGCT
TCAAACGTGAAGACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCT
TCCA
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