FC931132

Overview
NameFC931132
Unique NameFC931132
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: HBS1L_MOUSE (HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 7.632e-44
Identity = 90/212 (42.45%), Postives = 127/212 (59.91%), Query Frame = 2
Query:   20 TVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLD---WYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHV 646
            T++DAPGH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    V F+P SG  G+N+  RS + D   WYKG  LL+ +D+   P+R  DKP RL + DV+K  G G    G++E G ++ G  +   P   T   K + +H E +  A  G+HV
Sbjct:  339 TLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLTARSQSSDLTTWYKGMCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHV 548          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: HBS1L_BOVIN (HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.632e-44
Identity = 90/212 (42.45%), Postives = 128/212 (60.38%), Query Frame = 2
Query:   20 TVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLD---WYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHV 646
            T++DAPGH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    V F+P SG  G+N+I RS + +   WYKG  LL+ +D+   P+R  DKP RL + DV+K  G G    G++E G ++ G  +   P   T   K + +H E +  A  G+HV
Sbjct:  343 TLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLITRSQSSELTKWYKGLCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHV 552          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: ERF3A_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Mus musculus GN=Gspt1 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.632e-44
Identity = 94/231 (40.69%), Postives = 137/231 (59.31%), Query Frame = 2
Query:    8 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEK-VPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            K + T++DAPGH+ F+ NMI G SQAD AVL+I +  G FE G  K GQTREHA+LA T GVK +I   NKMD  T  +S  RY+E  +++  +LKKVG+NP+K + F+P SG  G N+ E+S    WY G   +  LDN+    R  D P+RLP+ D YK   +GTV +G++E+G +  G  +   P+    EV  +           PGE++  + + +  +++  GF+
Sbjct:  151 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDSVAPGENLKIRLKGIEEEEILPGFI 379          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: HBS1L_RAT (HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.968e-44
Identity = 90/212 (42.45%), Postives = 127/212 (59.91%), Query Frame = 2
Query:   20 TVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLD---WYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHV 646
            T++DAPGH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    V F+P SG  G+N+  RS + D   WYKG  LL+ +D+   P+R  DKP RL + DV+K  G G    G++E G ++ G  +   P   T   K + +H E +  A  G+HV
Sbjct:  336 TLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLTSRSQSSDLTKWYKGLCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYVQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHV 545          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: ERF3A_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Homo sapiens GN=GSPT1 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.968e-44
Identity = 94/231 (40.69%), Postives = 137/231 (59.31%), Query Frame = 2
Query:    8 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEK-VPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            K + T++DAPGH+ F+ NMI G SQAD AVL+I +  G FE G  K GQTREHA+LA T GVK +I   NKMD  T  +S  RY+E  +++  +LKKVG+NP+K + F+P SG  G N+ E+S    WY G   +  LDN+    R  D P+RLP+ D YK   +GTV +G++E+G +  G  +   P+    EV  +           PGE++  + + +  +++  GF+
Sbjct:  151 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEILPGFI 379          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: ERF3B_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Mus musculus GN=Gspt2 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.439e-42
Identity = 92/231 (39.83%), Postives = 138/231 (59.74%), Query Frame = 2
Query:    8 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEK-VPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            K + T++DAPGH+ F+ NMI G SQAD AVL+I +  G FE G  K GQTREHA+LA T GVK +I   NKMD  T  +S  RY+E  +++  +LKKVG++P+K + F+P SG  G N+ E+S    WY G   +  LD++    R  D P+RLP+ D YK   +GTV +G++E+G +  G  +   P+  + EV  +           PGE++  + + +  +++  GF+
Sbjct:  284 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKYLIVLINKMDDPTVDWSSERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYTGLPFIPYLDSLPNFNRSIDGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNKHSVEVLGIVSDDAETDFVAPGENLKIRLKGIEEEEILPGFI 512          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: ERF3B_PONAB (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Pongo abelii GN=GSPT2 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.880e-42
Identity = 92/227 (40.53%), Postives = 135/227 (59.47%), Query Frame = 2
Query:   20 TVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEK-VPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            T++DAPGH+ F+ NMI G SQAD AVL+I +  G FE G  K GQTREHA+LA T GVK +I   NKMD  T  +S  RY+E  +++  +LKKVG++P+K + F+P SG  G N+ E+S    WY G   +  LDN+    R  D P+RLP+ D YK   +GTV +G++E+G +  G  +   P+    EV  +           PGE++  + + +  +++  GF+
Sbjct:  284 TILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSIERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANVKEQSDFCPWYTGLPFIPYLDNLPNFNRSIDGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFI 508          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: ERF3B_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Homo sapiens GN=GSPT2 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.880e-42
Identity = 92/227 (40.53%), Postives = 135/227 (59.47%), Query Frame = 2
Query:   20 TVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEK-VPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            T++DAPGH+ F+ NMI G SQAD AVL+I +  G FE G  K GQTREHA+LA T GVK +I   NKMD  T  +S  RY+E  +++  +LKKVG++P+K + F+P SG  G N+ E+S    WY G   +  LDN+    R  D P+RLP+ D YK   +GTV +G++E+G +  G  +   P+    EV  +           PGE++  + + +  +++  GF+
Sbjct:  284 TILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSIERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYTGLPFIPYLDNLPNFNRSIDGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFI 508          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: ERF3_ZYGRO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Zygosaccharomyces rouxii GN=SUP35 PE=3 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.591e-41
Identity = 91/230 (39.57%), Postives = 138/230 (60.00%), Query Frame = 2
Query:   20 TVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYN-PEKVPFVPISGFEGDNMIER--STNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHE-ALQEALPGEHVGFKREDVAVKDLKRGFV 697
            T++DAPGH+ ++  MI G SQAD  +L+I +  G +E G  K GQTREHALLA T GV ++I   NKMD  T  +SK RYD+ VK +S++LK +GYN  E+V F+P+SG+ G  +  R       WY GP LL+ +DN++   R  + P  LP+    K+  +GT+  G++E+G ++ G      P+ +  E++++    E  +  A+ GE V  K + V  +D+  GFV
Sbjct:  318 TILDAPGHKMYVSEMIGGASQADVGILVISARKGEYETGFEKGGQTREHALLAKTQGVNKLIVTINKMDDPTVNWSKERYDQCVKNLSNFLKAIGYNVKEEVVFMPVSGYSGAGLGTRVDPKECPWYDGPALLEYMDNMSHVDRKMNAPFMLPI--AAKMRDMGTIVEGKIESGHIRKGHSTLLMPNKIPVEIQNIYNETENEVDMAICGEQVKLKIKGVEEEDIAPGFV 545          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: ERF3_YEAST (Eukaryotic peptide chain release factor GTP-binding subunit OS=Saccharomyces cerevisiae GN=SUP35 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.714e-41
Identity = 91/230 (39.57%), Postives = 135/230 (58.70%), Query Frame = 2
Query:   20 TVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYN-PEKVPFVPISGFEGDNMIER--STNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHE-ALQEALPGEHVGFKREDVAVKDLKRGFV 697
            T++DAPGH+ ++  MI G SQAD  VL+I +  G +E G  + GQTREHALLA T GV +M+   NKMD  T  +SK RYD+ V  VS++L+ +GYN    V F+P+SG+ G N+ +        WY GPTLL+ LD +N   R  + P  LP+    K+  +GT+  G++E+G +K G      P+    E++++    E  +  A+ GE V  + + V  +D+  GFV
Sbjct:  341 TILDAPGHKMYVSEMIGGASQADVGVLVISARKGEYETGFERGGQTREHALLAKTQGVNKMVVVVNKMDDPTVNWSKERYDQCVSNVSNFLRAIGYNIKTDVVFMPVSGYSGANLKDHVDPKECPWYTGPTLLEYLDTMNHVDRHINAPFMLPI--AAKMKDLGTIVEGKIESGHIKKGQSTLLMPNKTAVEIQNIYNETENEVDMAMCGEQVKLRIKGVEEEDISPGFV 568          
The following BLAST results are available for this feature:
BLAST of FC931132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HBS1L_MOUSE7.632e-4442.45HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV... [more]
HBS1L_BOVIN7.632e-4442.45HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1[more]
ERF3A_MOUSE7.632e-4440.69Eukaryotic peptide chain release factor GTP-bindin... [more]
HBS1L_RAT9.968e-4442.45HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE... [more]
ERF3A_HUMAN9.968e-4440.69Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_MOUSE1.439e-4239.83Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_PONAB1.880e-4240.53Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_HUMAN1.880e-4240.53Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_ZYGRO1.591e-4139.57Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_YEAST2.714e-4139.57Eukaryotic peptide chain release factor GTP-bindin... [more]

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Properties
Property NameValue
Genbank descriptionC34101G11EF PostHarvP1 Citrus clementina cDNA clone C34101G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931132 ID=FC931132; Name=FC931132; organism=Citrus clementina; type=EST; length=704bp
GAACACCAAGTACTACTGCACCGTCATTGATGCTCCCGGACATCGTGACT
TTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGTCCTC
ATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGG
TCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGA
TGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAGTATTCAAAG
GCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGT
TGGATACAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGG
GTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCA
ACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTCAGA
CAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTG
GAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTGGTATG
GTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCTGTTGA
GATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGAACATGTTGGCT
TCAAACGTGAAGACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCT
TCCA
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