FC931132

Overview
NameFC931132
Unique NameFC931132
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig789 contig Ccv1_Contig789:455..1158. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EFTU_STRU0 (Elongation factor Tu OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 79/237 (33.33%), Postives = 120/237 (50.63%), Query Frame = 2
Query:    5 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            T++Y   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD+  E            +  A + I EP+R +DKPL LP++DV+ I G GTV  GR++ G ++      +V          V  VEM  + L E L G++VG     V   +++RG V
Sbjct:   77 TRHYAH-IDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKIDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYEDIIM------ELMKTADEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEIEIVGIKEETKKAVVTGVEMFRKQLDEGLAGDNVGILLRGVQRDEIERGQV 296          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EFTU_PROA2 (Elongation factor Tu OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 77/231 (33.33%), Postives = 119/231 (51.52%), Query Frame = 2
Query:   26 IDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            ID PGH D+IKNMITG +Q D A+L++  T G          QTREH LLA  + V  ++   NK+D   P+  +     +  E+   L +  +  + +P +    +   +GD   E +          L+DA+D+ I EP R  DKP  +P++DV+ I G GTV  GR+E+GV+K G    +V   P+  +  V  +EM  + L +   G++ G     V  ++L+RG V
Sbjct:   80 IDCPGHADYIKNMITGAAQMDGAILVVAGTDGPMP-------QTREHILLARQVNVPALVVFLNKVDIADPELIEL----VELELRELLSEYEFPGDDIPIIKGSALKALDGDPESEAAIM-------ELMDAVDSYIPEPVRDVDKPFLMPIEDVFSISGRGTVGTGRIESGVIKIGEEVEIVGIKPTRKSV-VTGIEMFQKTLDQGQAGDNAGILFRGVDKEELERGMV 291          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EFTU_MYCLE (Elongation factor Tu OS=Mycobacterium leprae GN=tuf PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 83/232 (35.78%), Postives = 119/232 (51.29%), Query Frame = 2
Query:   26 IDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPT-LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD          W +  T L+DA+D +I  P R +DKP  +P++DV+ I G GTV  GRVE GV+       +V    +   T V  VEM  + L +   G++VG     +  +D++RG V
Sbjct:   82 VDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDAVD---DEELLELVEMEVRELLAAQEFD-EDAPVVRVSALKALEGD--------AKWVESVTQLMDAVDESIPAPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVVNVNEEVEIVGIRQTTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVERGQV 294          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EFTU_MYCLB (Elongation factor Tu OS=Mycobacterium leprae (strain Br4923) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 83/232 (35.78%), Postives = 119/232 (51.29%), Query Frame = 2
Query:   26 IDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPT-LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD          W +  T L+DA+D +I  P R +DKP  +P++DV+ I G GTV  GRVE GV+       +V    +   T V  VEM  + L +   G++VG     +  +D++RG V
Sbjct:   82 VDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDAVD---DEELLELVEMEVRELLAAQEFD-EDAPVVRVSALKALEGD--------AKWVESVTQLMDAVDESIPAPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVVNVNEEVEIVGIRQTTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVERGQV 294          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EFTU_GEOKA (Elongation factor Tu OS=Geobacillus kaustophilus GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 77/231 (33.33%), Postives = 117/231 (50.65%), Query Frame = 2
Query:   26 IDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK---PGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LL+  +GV  ++   NK D       +   + +  EV   L +  +  ++VP +    +   EGD   E        K   L++A+D  I  P+R  DKP  +P++DV+ I G GTV  GRVE G LK   P  ++       TT V  VEM  + L +A  G+++G     V+  +++RG V
Sbjct:   80 VDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLSRQVGVPYIVVFLNKCDMVD---DEELLELVEMEVRDLLSEYDFPGDEVPVIKGSALKALEGDPQWEE-------KIIELMNAVDEYIPTPQREVDKPFMMPIEDVFSITGRGTVATGRVERGTLKVGDPVEIIGLSDEPKTTTVTGVEMFRKLLDQAEAGDNIGALLRGVSRDEVERGQV 293          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EFTU_CLOB8 (Elongation factor Tu OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 80/233 (34.33%), Postives = 120/233 (51.50%), Query Frame = 2
Query:   26 IDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSV-----EMHHEALQEALPGEHVGFKREDVAVKDLKRGFVAS 703
            +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LL   +G++ ++   NK D           + +  EV   L +  +  + +P +  S  +    +E  T+ +  K    L++A+D+ I  P+R +DKP  +P++DV+ I G GTV  GRVE GVL  G  V     GLT E K V     EM  + L EA  G+++G     V   D++RG V S
Sbjct:   80 VDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLGSRVGIQYIVVFLNKADMVD---DPELLELVEMEVRELLSEYDFPGDDIPVITGSALKA---LENPTDEEAIKPIMDLMEAVDSYIPTPERATDKPFLMPIEDVFTITGRGTVATGRVEAGVLHVGDEVEI--VGLTEEKKKVVVTGIEMFRKLLDEAQAGDNIGALLRGVQRTDIERGQVLS 297          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EFTU_CHLTR (Elongation factor Tu OS=Chlamydia trachomatis GN=tuf PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 78/230 (33.91%), Postives = 117/230 (50.87%), Query Frame = 2
Query:   26 IDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D  + + ++   D +  E+   L++ GY  +  P +    +   EGD                L+ A+D NI  P+R  DKP  +P++DV+ I G GTV  GR+E G++K    V       T E  V  VEM  + L E   GE+VG     +   D++RG V
Sbjct:   80 VDCPGHADYVKNMITGAAQMDGAILVVSATDGAMP-------QTKEHILLARQVGVPYIVVFLNKIDMISEEDAEL-VDLVEMELVELLEEKGY--KGCPIIRGSALKALEGDAAYIEKVR-------ELMQAVDDNIPTPEREIDKPFLMPIEDVFSISGRGTVVTGRIERGIVKVSDKVQLVGLRDTKETIVTGVEMFRKELPEGRAGENVGLLLRGIGKNDVERGMV 292          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EFTU_CHLTA (Elongation factor Tu OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=tuf PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 78/230 (33.91%), Postives = 117/230 (50.87%), Query Frame = 2
Query:   26 IDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D  + + ++   D +  E+   L++ GY  +  P +    +   EGD                L+ A+D NI  P+R  DKP  +P++DV+ I G GTV  GR+E G++K    V       T E  V  VEM  + L E   GE+VG     +   D++RG V
Sbjct:   80 VDCPGHADYVKNMITGAAQMDGAILVVSATDGAMP-------QTKEHILLARQVGVPYIVVFLNKIDMISEEDAEL-VDLVEMELVELLEEKGY--KGCPIIRGSALKALEGDAAYIEKVR-------ELMQAVDDNIPTPEREIDKPFLMPIEDVFSISGRGTVVTGRIERGIVKVSDKVQLVGLRDTKETIVTGVEMFRKELPEGRAGENVGLLLRGIGKNDVERGMV 292          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: EFTU_AERS4 (Elongation factor Tu OS=Aeromonas salmonicida (strain A449) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 79/234 (33.76%), Postives = 115/234 (49.15%), Query Frame = 2
Query:   26 IDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGD-----NMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFG--PSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRGFV 697
            +D PGH D++KNMITG +Q D A+L++ +T G          QTREH LL   +G+  MI   NK D       +   + +  EV   L +  +  + +P V    +   EGD      +IE + +LD Y           I EP+R  D P  +P++DV+ I G GTV  GRVE G++K G  V        ++T    VEM  + L E   GE++G     V  +D++RG V
Sbjct:   80 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLGRQVGIPYMIVFMNKCDMVD---DEELLELVEMEVRELLTEYDFPGDDLPVVRGSALKALEGDAAWEEKIIELANHLDTY-----------IPEPERAIDLPFLMPIEDVFSIAGRGTVVTGRVERGIVKVGETVEIVGIKDTVSTTCTGVEMFRKLLDEGRAGENIGALLRGVKREDVERGQV 292          
BLAST of FC931132 vs. ExPASy Swiss-Prot
Match: CYSN_LARHH (Sulfate adenylyltransferase subunit 1 OS=Laribacter hongkongensis (strain HLHK9) GN=cysN PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.652e-25
Identity = 71/223 (31.84%), Postives = 115/223 (51.57%), Query Frame = 2
Query:   23 VIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGEHVGFKREDVAVKDLKRG 691
            + D PGH  + +NM TG S AD A+++ID+  G          QTR H+ +A  LG++ +I   NKMD    ++ +A ++ I ++  ++ K +  +   + FVP+S   GDN++  S  + WY GP+L+  LD+I      + +  RLP+Q V +         G +  GV++PG  VT  PSG  + V+++      L  A  G+ V    ED    D+ RG
Sbjct:  108 IADCPGHEQYTRNMATGASTADLAIILIDARYG-------VQTQTRRHSFIASLLGIRHVIVAVNKMDLL--EFDQAVFERIRQDYLTFAKALDIHD--IRFVPLSALRGDNVVSPSERMPWYDGPSLMQLLDSIRLDADQALQAFRLPVQYVNRPNLDFRGFCGTIAAGVIRPGDQVTVLPSGRQSRVRAIVTTDGELPVAATGQAVTLTLEDEI--DISRG 317          
The following BLAST results are available for this feature:
BLAST of FC931132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_STRU04.652e-2533.33Elongation factor Tu OS=Streptococcus uberis (stra... [more]
EFTU_PROA24.652e-2533.33Elongation factor Tu OS=Prosthecochloris aestuarii... [more]
EFTU_MYCLE4.652e-2535.78Elongation factor Tu OS=Mycobacterium leprae GN=tu... [more]
EFTU_MYCLB4.652e-2535.78Elongation factor Tu OS=Mycobacterium leprae (stra... [more]
EFTU_GEOKA4.652e-2533.33Elongation factor Tu OS=Geobacillus kaustophilus G... [more]
EFTU_CLOB84.652e-2534.33Elongation factor Tu OS=Clostridium beijerinckii (... [more]
EFTU_CHLTR4.652e-2533.91Elongation factor Tu OS=Chlamydia trachomatis GN=t... [more]
EFTU_CHLTA4.652e-2533.91Elongation factor Tu OS=Chlamydia trachomatis (str... [more]
EFTU_AERS44.652e-2533.76Elongation factor Tu OS=Aeromonas salmonicida (str... [more]
CYSN_LARHH4.652e-2531.84Sulfate adenylyltransferase subunit 1 OS=Laribacte... [more]

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Properties
Property NameValue
Genbank descriptionC34101G11EF PostHarvP1 Citrus clementina cDNA clone C34101G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931132 ID=FC931132; Name=FC931132; organism=Citrus clementina; type=EST; length=704bp
GAACACCAAGTACTACTGCACCGTCATTGATGCTCCCGGACATCGTGACT
TTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGTCCTC
ATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGG
TCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGA
TGATTTGCTGCTGTAACAAGATGGACGCCACCACCCCCAAGTATTCAAAG
GCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGT
TGGATACAACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGG
GTGACAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCA
ACCCTGCTGGACGCTCTTGACAATATCAATGAGCCGAAGAGGCCCTCAGA
CAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTG
GAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTGGTATG
GTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCTGTTGA
GATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGAACATGTTGGCT
TCAAACGTGAAGACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCT
TCCA
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