FC931134

Overview
NameFC931134
Unique NameFC931134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931134_ssr121 microsatellite FC931134_ssr121:121..132. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13179 contig Ccv1_Contig13179:44..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931134 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.296e-72
Identity = 132/187 (70.59%), Postives = 145/187 (77.54%), Query Frame = 1
Query:  145 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRERRDSHVPV 705
            KDY DPPPAP  D  EL  WSF+RA IAEFIA            IGYK +TDP      C  VG+LGIAW+FGGMIF+LVYCTAGISGGHINPAVTFGLFL RKVSL+RAL+YM+AQC GAICG G VKAF K  YN++GGGAN +A GYNKGT  GAE+IGTFVLVYTVFSATDPKR  RDSHVP+
Sbjct:   17 KDYVDPPPAPFFDMGELKLWSFWRAAIAEFIATLLFLYITVATVIGYKKETDP------CASVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTAFGAELIGTFVLVYTVFSATDPKRSARDSHVPI 197          
BLAST of FC931134 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 265.003 bits (676), Expect = 2.806e-70
Identity = 134/187 (71.66%), Postives = 143/187 (76.47%), Query Frame = 1
Query:  145 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRERRDSHVPV 705
            KDY DPPPAPL D  EL  WSFYRA+IAEFIA            IGYK Q+    + DQCGGVG LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGL L RKVS+IRA++Y+VAQCLG I G G VK   K  YN  GGGAN +A GY+ GT LGAEIIGTFVLVYTVFSATDPKR  RDSHVPV
Sbjct:   15 KDYTDPPPAPLFDVGELRLWSFYRALIAEFIATLLFLYITVATVIGYKVQS----SADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANGGGANMVASGYSTGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPV 197          
BLAST of FC931134 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.055e-65
Identity = 126/187 (67.38%), Postives = 137/187 (73.26%), Query Frame = 1
Query:  145 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRERRDSHVPV 705
            KDY +PPPAPL +  EL  WSFYRA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ YM+ QCLGAICG G VK FQ + Y   GGGAN +A GY KG+GLGAEIIGTFVLVYTVFSATD KR  RDSHVP+
Sbjct:   30 KDYKEPPPAPLFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRA--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPI 210          
BLAST of FC931134 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 246.514 bits (628), Expect = 1.033e-64
Identity = 124/187 (66.31%), Postives = 136/187 (72.73%), Query Frame = 1
Query:  145 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRERRDSHVPV 705
            KDY +PPPAPL +  EL  WSFYRA IAEF+A            +G       N +T +C  VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RAL YMV QCLGAICG G VK FQK  Y   GGGAN +A GY KG GLGAEI+GTF+LVYTVFSATD KR  RDSHVP+
Sbjct:   31 KDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGV------NNSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPI 211          
BLAST of FC931134 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.762e-64
Identity = 126/189 (66.67%), Postives = 137/189 (72.49%), Query Frame = 1
Query:  139 SAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRERRDSHVPV 705
            S KDY +PPPAPL +  EL  WSF+RA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ Y+V QCLGAICG G VK FQ   Y   GGGAN +A GY KG+GLGAEIIGTFVLVYTVFSATD KR  RDSHVP+
Sbjct:   27 SDKDYKEPPPAPLFEPGELASWSFWRAGIAEFIATFLFLYITVLTVMGVKRS--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTIAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPI 209          
BLAST of FC931134 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.005e-64
Identity = 126/189 (66.67%), Postives = 136/189 (71.96%), Query Frame = 1
Query:  139 SAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRERRDSHVPV 705
            S KDY +PPPAP  +  EL  WSF+RA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RAL Y+V QCLGAICG G VK FQ   Y   GGGAN +A GY KG+GLGAEIIGTFVLVYTVFSATD KR  RDSHVP+
Sbjct:   27 SDKDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRS--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPI 209          
BLAST of FC931134 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.005e-64
Identity = 126/189 (66.67%), Postives = 136/189 (71.96%), Query Frame = 1
Query:  139 SAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRERRDSHVPV 705
            S KDY +PPPAP  +  EL  WSF+RA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RAL Y+V QCLGAICG G VK FQ   Y   GGGAN +A GY KG+GLGAEIIGTFVLVYTVFSATD KR  RDSHVP+
Sbjct:   27 SDKDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRS--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPI 209          
BLAST of FC931134 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 3.925e-64
Identity = 125/188 (66.49%), Postives = 136/188 (72.34%), Query Frame = 1
Query:  142 AKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRERRDSHVPV 705
            +KDY +PPPAP  +  EL  WSFYRA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RAL Y+V QCLGAICG G VK FQ   Y   GGGAN +A GY KG+GLGAEI+GTFVLVYTVFSATD KR  RDSHVP+
Sbjct:   29 SKDYKEPPPAPFFEPGELKSWSFYRAGIAEFIATFLFLYVTVLTVMGVKRA--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFQPGLYQTNGGGANVVAHGYTKGSGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPI 210          
BLAST of FC931134 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.925e-64
Identity = 125/187 (66.84%), Postives = 136/187 (72.73%), Query Frame = 1
Query:  145 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRERRDSHVPV 705
            KDY +PPPAP  +  EL  WSFYRA IAEFIA            +G K    PN+    C  VGI GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RA+ Y+V QCLGAICG G VK FQ + Y   GGGAN +A GY KG+GLGAEIIGTFVLVYTVFSATD KR  RDSHVP+
Sbjct:   29 KDYKEPPPAPFFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRA--PNM----CASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQPNPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPI 209          
BLAST of FC931134 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 6.694e-64
Identity = 122/187 (65.24%), Postives = 135/187 (72.19%), Query Frame = 1
Query:  145 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRERRDSHVPV 705
            KDY +PPPAPL + EEL  WSFYRA IAEF+A            +G         ++ +C  VGI GIAW+FGGMIF LVYCTAGISGGHINPAVTFGLFL RK+SL RAL YMV QCLGAICG G VK FQ+  Y   GGGAN +  GY KG GLGAEI+GTFVLVYTVFSATD KR  RDSHVP+
Sbjct:   31 KDYKEPPPAPLFEAEELTSWSFYRAGIAEFVATFLFLYISILTVMGVSK------SSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPI 211          
The following BLAST results are available for this feature:
BLAST of FC931134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PIP1_ATRCA2.296e-7270.59Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP26_ORYSJ2.806e-7071.66Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP14_ARATH6.055e-6567.38Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP12_ORYSJ1.033e-6466.31Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP12_ARATH1.762e-6466.67Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP11_VICFA3.005e-6466.67Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH3.005e-6466.67Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP15_ARATH3.925e-6466.49Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH3.925e-6466.84Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP15_MAIZE6.694e-6465.24Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34101H01EF PostHarvP1 Citrus clementina cDNA clone C34101H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931134 ID=FC931134; Name=FC931134; organism=Citrus clementina; type=EST; length=706bp
CATCATTAAACTCTGTACCAACACAACAGTCGTAGCTCTTGTTTCTCCCT
CTCGTTTAATTAACAAAACAAAAATAAAAGGGAAAAAATGGGGAAGGATG
TTGAAGTTGCTGAGCAGCAAGGCGGCGGCGGCGAGTTCTCAGCCAAGGAC
TACCACGACCCCCCTCCGGCGCCGCTGATCGATTTCGAGGAGCTGGGCAA
GTGGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATCGCTACGCTTTTGT
TTCTTTATGTTACCGTCTTGACTGTGATTGGATACAAGAGCCAGACTGAT
CCCAACTTGAATACCGATCAGTGTGGTGGCGTTGGCATTCTTGGCATCGC
TTGGGCCTTTGGTGGCATGATCTTCATTCTCGTTTACTGCACAGCCGGTA
TTTCTGGTGGACATATCAACCCGGCTGTGACATTCGGACTGTTCTTGGGG
CGCAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGGTAGCACAGTGCTT
GGGTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTCCAAAAATCATACT
ACAACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGATGGATACAACAAG
GGCACCGGACTGGGTGCTGAGATCATCGGTACTTTCGTTCTTGTCTACAC
TGTTTTCTCTGCCACTGATCCTAAAAGAGAGCGCAGAGACTCCCATGTTC
CGGTCT
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