FC931138

Overview
NameFC931138
Unique NameFC931138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931138_ssr23 microsatellite FC931138_ssr23:23..48. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig475 contig Ccv1_Contig475:27..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_HELVI (V-type proton ATPase subunit B OS=Heliothis virescens GN=VHA55 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 7.696e-70
Identity = 132/168 (78.57%), Postives = 144/168 (85.71%), Query Frame = 2
Query:  158 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVK 661
            Y+TV+GV GPLVILD VK PK+ EIV +RL DGT+R GQVLEV G KAVVQVFEGTSGID K T  +FTG++L+TPVS DMLGR+FNGSGKPID GPPIL E +LDI G  INP  R YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK
Sbjct:   30 YKTVSGVNGPLVILDDVKFPKFSEIVQLRLADGTLRSGQVLEVSGTKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVK 197          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_MANSE (V-type proton ATPase subunit B OS=Manduca sexta GN=VHA55 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.714e-69
Identity = 131/170 (77.06%), Postives = 145/170 (85.29%), Query Frame = 2
Query:  152 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVK 661
            + Y+TV+GV GPLVILD+VK PK+ EIV ++L DGT R GQVLEV G KAVVQVFEGTSGID K T  +FTG++L+TPVS DMLGR+FNGSGKPID GPPIL E +LDI G  INP  R YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK
Sbjct:   28 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTHRSGQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVK 197          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_DICDI (V-type proton ATPase subunit B OS=Dictyostelium discoideum GN=vatB PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.111e-68
Identity = 126/174 (72.41%), Postives = 145/174 (83.33%), Query Frame = 2
Query:  152 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEK 673
            ++YRTVT V GPLVILD ++GPK+ EIV + LGDGT R+GQVLE+ G++AVVQVFEGT GID K T  +F+G++LK PVS D LGRIFNGSGKP+D GP +L E YLDI G  INPS R YP+EMIQTGIS ID MNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK+  K
Sbjct:   21 LDYRTVTAVNGPLVILDNIRGPKFSEIVTLTLGDGTQRKGQVLEIQGKRAVVQVFEGTIGIDAKHTRCEFSGDILKMPVSEDSLGRIFNGSGKPVDKGPNVLAEEYLDIQGQPINPSVRVYPQEMIQTGISAIDTMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSGK 194          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_YEAST (V-type proton ATPase subunit B OS=Saccharomyces cerevisiae GN=VMA2 PE=1 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 7.203e-68
Identity = 129/186 (69.35%), Postives = 154/186 (82.80%), Query Frame = 2
Query:  107 AQNNVDMEEG-TLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVK 661
            A N   +E+G  ++  + Y TV+GV GPLVIL+KVK P+Y EIVN+ L DGT+R+GQVLE+ G++A+VQVFEGTSGID K TTV+FTGE L+ PVS DMLGRIF+GSG+PIDNGP +  E YLDI+GS INP  R YPEEMI TG+S ID MNSIARGQKIP+FSA+GLPHNEIAAQICRQAGLV+
Sbjct:   10 AINKKAVEQGFNVKPRLNYNTVSGVNGPLVILEKVKFPRYNEIVNLTLPDGTVRQGQVLEIRGDRAIVQVFEGTSGIDVKKTTVEFTGESLRIPVSEDMLGRIFDGSGRPIDNGPKVFAEDYLDINGSPINPYARIYPEEMISTGVSAIDTMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVR 195          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB2_RAT (V-type proton ATPase subunit B, brain isoform OS=Rattus norvegicus GN=Atp6v1b2 PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.737e-67
Identity = 128/171 (74.85%), Postives = 144/171 (84.21%), Query Frame = 2
Query:  152 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKR 664
            + Y+TV+GV GPLVILD VK P+Y EIV++ L DGT R GQVLEV G KAVVQVFEGTSGID K T+ +FTG++L+TPVS DMLGR+FNGSGKPID GP +L E +LDI G  INP  R YPEEMIQTGIS ID MNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK+
Sbjct:   45 LTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKK 215          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB2_PONAB (V-type proton ATPase subunit B, brain isoform OS=Pongo abelii GN=ATP6V1B2 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.737e-67
Identity = 128/171 (74.85%), Postives = 144/171 (84.21%), Query Frame = 2
Query:  152 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKR 664
            + Y+TV+GV GPLVILD VK P+Y EIV++ L DGT R GQVLEV G KAVVQVFEGTSGID K T+ +FTG++L+TPVS DMLGR+FNGSGKPID GP +L E +LDI G  INP  R YPEEMIQTGIS ID MNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK+
Sbjct:   45 LTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKK 215          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB2_MOUSE (V-type proton ATPase subunit B, brain isoform OS=Mus musculus GN=Atp6v1b2 PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.737e-67
Identity = 128/171 (74.85%), Postives = 144/171 (84.21%), Query Frame = 2
Query:  152 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKR 664
            + Y+TV+GV GPLVILD VK P+Y EIV++ L DGT R GQVLEV G KAVVQVFEGTSGID K T+ +FTG++L+TPVS DMLGR+FNGSGKPID GP +L E +LDI G  INP  R YPEEMIQTGIS ID MNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK+
Sbjct:   45 LTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKK 215          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB2_HUMAN (V-type proton ATPase subunit B, brain isoform OS=Homo sapiens GN=ATP6V1B2 PE=1 SV=3)

HSP 1 Score: 254.988 bits (650), Expect = 2.737e-67
Identity = 128/171 (74.85%), Postives = 144/171 (84.21%), Query Frame = 2
Query:  152 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKR 664
            + Y+TV+GV GPLVILD VK P+Y EIV++ L DGT R GQVLEV G KAVVQVFEGTSGID K T+ +FTG++L+TPVS DMLGR+FNGSGKPID GP +L E +LDI G  INP  R YPEEMIQTGIS ID MNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK+
Sbjct:   45 LTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKK 215          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB2_BOVIN (V-type proton ATPase subunit B, brain isoform OS=Bos taurus GN=ATP6V1B2 PE=1 SV=3)

HSP 1 Score: 254.988 bits (650), Expect = 2.737e-67
Identity = 128/171 (74.85%), Postives = 144/171 (84.21%), Query Frame = 2
Query:  152 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKR 664
            + Y+TV+GV GPLVILD VK P+Y EIV++ L DGT R GQVLEV G KAVVQVFEGTSGID K T+ +FTG++L+TPVS DMLGR+FNGSGKPID GP +L E +LDI G  INP  R YPEEMIQTGIS ID MNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK+
Sbjct:   45 LTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKK 215          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB1_HUMAN (V-type proton ATPase subunit B, kidney isoform OS=Homo sapiens GN=ATP6V1B1 PE=1 SV=3)

HSP 1 Score: 251.906 bits (642), Expect = 2.317e-66
Identity = 125/169 (73.96%), Postives = 142/169 (84.02%), Query Frame = 2
Query:  158 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKR 664
            YRTV  V GPLV+LD+VK  +Y EIV+  L DGT R GQVLEV G KA+VQVFEGTSGID + TT +FTG++L+TPVS DMLGR+FNGSGKPID GP ++ E +LDI+G  INP  R YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK+
Sbjct:   41 YRTVCSVNGPLVVLDRVKFAQYAEIVHFTLPDGTQRSGQVLEVAGTKAIVQVFEGTSGIDARKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPVVMAEDFLDINGQPINPHSRIYPEEMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKK 209          
The following BLAST results are available for this feature:
BLAST of FC931138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
VATB_HELVI7.696e-7078.57V-type proton ATPase subunit B OS=Heliothis viresc... [more]
VATB_MANSE1.714e-6977.06V-type proton ATPase subunit B OS=Manduca sexta GN... [more]
VATB_DICDI1.111e-6872.41V-type proton ATPase subunit B OS=Dictyostelium di... [more]
VATB_YEAST7.203e-6869.35V-type proton ATPase subunit B OS=Saccharomyces ce... [more]
VATB2_RAT2.737e-6774.85V-type proton ATPase subunit B, brain isoform OS=R... [more]
VATB2_PONAB2.737e-6774.85V-type proton ATPase subunit B, brain isoform OS=P... [more]
VATB2_MOUSE2.737e-6774.85V-type proton ATPase subunit B, brain isoform OS=M... [more]
VATB2_HUMAN2.737e-6774.85V-type proton ATPase subunit B, brain isoform OS=H... [more]
VATB2_BOVIN2.737e-6774.85V-type proton ATPase subunit B, brain isoform OS=B... [more]
VATB1_HUMAN2.317e-6673.96V-type proton ATPase subunit B, kidney isoform OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34101H05EF PostHarvP1 Citrus clementina cDNA clone C34101H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931138 ID=FC931138; Name=FC931138; organism=Citrus clementina; type=EST; length=686bp
GCATCTCTCATTGCCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCA
CTCACAGAGATCACAAGAAAGACCAAAAAAAAAGAAAAAAATTGAAAATG
GGTGTGGCACAAAACAATGTTGACATGGAGGAGGGTACTCTGGAAGTCGC
CATGGAGTACAGAACGGTCACCGGAGTTGCTGGGCCTCTAGTTATCCTTG
ATAAAGTCAAGGGACCCAAATATTATGAGATTGTCAATATTCGGTTGGGA
GATGGAACAATGCGACGTGGTCAGGTCCTAGAAGTTGATGGAGAGAAAGC
TGTTGTTCAGGTCTTTGAAGGGACATCCGGAATTGACAATAAATTTACAA
CTGTGCAGTTTACAGGGGAGGTTCTGAAGACTCCTGTCTCATTGGATATG
CTTGGGCGCATTTTTAATGGTTCTGGGAAACCCATTGATAATGGTCCCCC
AATTTTGCCAGAGGCTTACTTGGATATATCCGGAAGTTCTATCAACCCTA
GTGAGAGAACCTATCCTGAAGAGATGATACAGACAGGGATTTCTACCATT
GATGTGATGAACTCCATTGCTAGAGGACAAAAGATCCCTCTTTTTTCTGC
TGCCGGTCTTCCCCATAATGAAATTGCTGCTCAGATTTGTCGCCAGGCTG
GTTTAGTCAAGCGATTGGAGAAGACTGATAATCTTC
back to top