FC931138

Overview
NameFC931138
Unique NameFC931138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931138_ssr23 microsatellite FC931138_ssr23:23..48. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig475 contig Ccv1_Contig475:27..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB1_BOVIN (V-type proton ATPase subunit B, kidney isoform OS=Bos taurus GN=ATP6V1B1 PE=1 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.026e-66
Identity = 124/169 (73.37%), Postives = 143/169 (84.62%), Query Frame = 2
Query:  158 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKR 664
            YRTV  V GPLV+LD+VK  +Y EIVN  L +GT R GQVLEV G KA+VQVFEGTSGID + TT +FTG++L+TPVS DMLGR+FNGSGKPID GP ++ E +LDI+G  INP +R YPEEMI+TGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVK+
Sbjct:   41 YRTVCSVNGPLVVLDQVKFAQYAEIVNFTLPNGTQRSGQVLEVSGTKAIVQVFEGTSGIDAQKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPVVMAEDFLDINGQPINPHDRIYPEEMIETGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKK 209          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_SCHPO (V-type proton ATPase subunit B OS=Schizosaccharomyces pombe GN=vma2 PE=1 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 1.962e-65
Identity = 122/183 (66.67%), Postives = 148/183 (80.87%), Query Frame = 2
Query:  125 MEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEK 673
            +++ +++  + Y TV  + GPLVILD ++ P+Y EIVN+ L DG++R GQVLEV G KA+VQVFEGTSG+D + TT+ FTG  ++ PVS DMLGR+FNGSG PID GP +L E YLDI+GS INP  R YPEEMIQTGIS+ID +NSIARGQKIP+FSAAGLPHNEIAAQICRQAGLVKR  K
Sbjct:   13 VKDYSIKPRLSYNTVNSITGPLVILDNIRRPQYNEIVNLNLPDGSVRSGQVLEVAGHKAIVQVFEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDKGPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSIDGLNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKRPTK 195          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_PLAFA (V-type proton ATPase subunit B OS=Plasmodium falciparum GN=VAPB PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.370e-65
Identity = 122/177 (68.93%), Postives = 147/177 (83.05%), Query Frame = 2
Query:  152 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDN 682
            +EY+T++GV GPLVI++ VK PKY EIV I L D T R+GQ+LEV G+KAV+QVFEGTSGIDNK + V+ +G++LK P+S +MLGR+FNGSGKPID GP IL + YLDI+G+ INP  R YP+EMIQTGISTIDVMNSI RGQKIPLFSAAGLPHNEI AQICRQA LV+  +  D+
Sbjct:   30 LEYKTISGVQGPLVIIEDVKFPKYSEIVTIHLSDNTTRQGQILEVCGKKAVIQVFEGTSGIDNKNSYVEVSGDILKMPMSDEMLGRVFNGSGKPIDKGPNILADDYLDINGNPINPQCRVYPKEMIQTGISTIDVMNSIVRGQKIPLFSAAGLPHNEIGAQICRQASLVQGKDVLDH 206          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_ENCCU (V-type proton ATPase subunit B OS=Encephalitozoon cuniculi GN=VMA2 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.370e-65
Identity = 123/186 (66.13%), Postives = 149/186 (80.11%), Query Frame = 2
Query:  125 MEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDN 682
            +E   +E  M YR + GV GPLVI+D ++  KY E+V++ L DG++R+GQVLEV G+KAV+QVFEGT+GID K T V FTGE +K  +S D+LGRIFNGSG+ ID GP I+PE YLDI G  +NP  R YPEEMIQTGIS+IDVMNSIARGQKIP+FSA+GLPHNEIAAQICRQAGLVKR +  D+
Sbjct:    2 LESVRIEPKMSYRKIVGVNGPLVIMDNIRFLKYAEMVSLTLPDGSVRQGQVLEVSGKKAVIQVFEGTAGIDVKETQVTFTGETMKMGMSEDVLGRIFNGSGRVIDGGPKIIPEDYLDIQGQPLNPYARIYPEEMIQTGISSIDVMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVKRKDSIDS 187          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_CANTR (V-type proton ATPase subunit B OS=Candida tropicalis GN=VMA2 PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.370e-65
Identity = 126/170 (74.12%), Postives = 140/170 (82.35%), Query Frame = 2
Query:  152 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVK 661
            + Y  V GV GPLVILD VK P+Y EIVN+ L DGT+R+GQVLEV G KA+VQVFEGTSGID K T V+FTGE LK PVS DMLGRIF+GSG+PID GP I  E YLDI+GS INP  R YPEEMI TG+S ID MNSIARGQKIP+FSA+GLPHNEIAAQICRQAGLV+
Sbjct:   26 INYTPVGGVNGPLVILDNVKFPRYNEIVNLTLPDGTVRQGQVLEVRGTKAIVQVFEGTSGIDVKKTRVEFTGENLKIPVSEDMLGRIFDGSGRPIDKGPKIFAEDYLDINGSPINPYARIYPEEMISTGVSAIDTMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVR 195          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_CAEBR (Probable V-type proton ATPase subunit B OS=Caenorhabditis briggsae GN=vha-12 PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.699e-64
Identity = 124/168 (73.81%), Postives = 140/168 (83.33%), Query Frame = 2
Query:  158 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVK 661
            Y+TV+GV GPLVIL+ VK P++ EIV I L DG+ R GQVLE+   KAVVQVFEGTSGID K T  +FTG++L+TPVS DMLGRIFNGSGKPID GPP+L E +LDI+G  INP  R YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIAAQI RQ GLV+
Sbjct:   29 YQTVSGVNGPLVILNDVKFPQFSEIVKITLPDGSQRSGQVLEIAKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDFLDINGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQIVRQGGLVQ 196          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_CAEEL (Probable V-type proton ATPase subunit B OS=Caenorhabditis elegans GN=vha-12 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.076e-63
Identity = 123/168 (73.21%), Postives = 139/168 (82.74%), Query Frame = 2
Query:  158 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVK 661
            Y+TV GV GPLVIL+ VK P++ EIV I L DG+ R GQVLE+   KAVVQVFEGTSGID K T  +FTG++L+TPVS DMLGRIFNGSGKPID GPP+L E +LDI+G  INP  R YPEEMIQTGIS IDVMNSIARGQKIP+FSA+GLPHNEIAAQI RQ GLV+
Sbjct:   29 YQTVCGVNGPLVILNDVKFPQFSEIVKITLPDGSKRSGQVLEISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDFLDINGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSASGLPHNEIAAQIVRQGGLVQ 196          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_NEUCR (V-type proton ATPase subunit B OS=Neurospora crassa GN=vma-2 PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.836e-63
Identity = 125/171 (73.10%), Postives = 137/171 (80.12%), Query Frame = 2
Query:  152 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKR 664
            + Y TV GV GPLVILD VK P+Y EIV + L DGT R GQVLE  G +AVVQVFEGTSGID K T V+FTGE LK  VS DMLGRIF+GSG+ ID GP +L E YLDI+GS INP  R YP+EMI TGIS ID MNSIARGQKIP+FSAAGLPHNEIAAQICRQAGLV+R
Sbjct:   16 IRYNTVGGVNGPLVILDNVKFPRYNEIVTLTLPDGTQRSGQVLEARGNRAVVQVFEGTSGIDVKKTKVEFTGESLKLGVSEDMLGRIFDGSGRAIDKGPKVLAEEYLDINGSPINPYAREYPQEMISTGISAIDTMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVQR 186          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_TRYCO (V-type proton ATPase subunit B OS=Trypanosoma congolense PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.090e-63
Identity = 123/177 (69.49%), Postives = 142/177 (80.23%), Query Frame = 2
Query:  152 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDN 682
            +EY T+  V GPLVIL  V+ P + EIVNI L DGTMRRGQVLEVDG+KAVVQVFEGTSGID   +  +FTG+V++  VS DMLGR+FNGSG PID+GPP+L E Y DI G  INP  R YPEEMIQTGIS+IDVM SI+RGQKIPLFS AGLPHNEIAAQI RQAGLV++  K ++
Sbjct:   25 LEYTTIRAVNGPLVILGDVRLPTFAEIVNIELSDGTMRRGQVLEVDGDKAVVQVFEGTSGIDVMRSKCEFTGKVMELGVSEDMLGRVFNGSGIPIDDGPPVLAEQYRDIQGIPINPRARVYPEEMIQTGISSIDVMTSISRGQKIPLFSGAGLPHNEIAAQIVRQAGLVRKEGKQED 201          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_STRSV (V-type ATP synthase beta chain OS=Streptococcus sanguinis (strain SK36) GN=atpB PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.657e-54
Identity = 104/170 (61.18%), Postives = 132/170 (77.65%), Query Frame = 2
Query:  140 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            + V  EYRTV+ V GPL+I+D+V G  + E+V I+L DG+ R+GQVLEV  +KA+VQ+FEG+SGI+ +   V+FTG  L+ PVS DM+GRIFNG GKPID GP ILPE YLDI G +INP  R YP+E IQTGIS ID +N++ RGQK+P+FS +GLPH E+AAQI RQA
Sbjct:    1 MSVIKEYRTVSEVVGPLMIVDQVAGVHFNELVEIQLHDGSKRQGQVLEVQEDKAMVQLFEGSSGINLEKAKVRFTGRPLELPVSEDMVGRIFNGMGKPIDGGPAILPEKYLDIDGQAINPVARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQA 170          
The following BLAST results are available for this feature:
BLAST of FC931138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
VATB1_BOVIN3.026e-6673.37V-type proton ATPase subunit B, kidney isoform OS=... [more]
VATB_SCHPO1.962e-6566.67V-type proton ATPase subunit B OS=Schizosaccharomy... [more]
VATB_PLAFA4.370e-6568.93V-type proton ATPase subunit B OS=Plasmodium falci... [more]
VATB_ENCCU4.370e-6566.13V-type proton ATPase subunit B OS=Encephalitozoon ... [more]
VATB_CANTR4.370e-6574.12V-type proton ATPase subunit B OS=Candida tropical... [more]
VATB_CAEBR3.699e-6473.81Probable V-type proton ATPase subunit B OS=Caenorh... [more]
VATB_CAEEL1.076e-6373.21Probable V-type proton ATPase subunit B OS=Caenorh... [more]
VATB_NEUCR1.836e-6373.10V-type proton ATPase subunit B OS=Neurospora crass... [more]
VATB_TRYCO4.090e-6369.49V-type proton ATPase subunit B OS=Trypanosoma cong... [more]
VATB_STRSV2.657e-5461.18V-type ATP synthase beta chain OS=Streptococcus sa... [more]

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Properties
Property NameValue
Genbank descriptionC34101H05EF PostHarvP1 Citrus clementina cDNA clone C34101H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931138 ID=FC931138; Name=FC931138; organism=Citrus clementina; type=EST; length=686bp
GCATCTCTCATTGCCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCA
CTCACAGAGATCACAAGAAAGACCAAAAAAAAAGAAAAAAATTGAAAATG
GGTGTGGCACAAAACAATGTTGACATGGAGGAGGGTACTCTGGAAGTCGC
CATGGAGTACAGAACGGTCACCGGAGTTGCTGGGCCTCTAGTTATCCTTG
ATAAAGTCAAGGGACCCAAATATTATGAGATTGTCAATATTCGGTTGGGA
GATGGAACAATGCGACGTGGTCAGGTCCTAGAAGTTGATGGAGAGAAAGC
TGTTGTTCAGGTCTTTGAAGGGACATCCGGAATTGACAATAAATTTACAA
CTGTGCAGTTTACAGGGGAGGTTCTGAAGACTCCTGTCTCATTGGATATG
CTTGGGCGCATTTTTAATGGTTCTGGGAAACCCATTGATAATGGTCCCCC
AATTTTGCCAGAGGCTTACTTGGATATATCCGGAAGTTCTATCAACCCTA
GTGAGAGAACCTATCCTGAAGAGATGATACAGACAGGGATTTCTACCATT
GATGTGATGAACTCCATTGCTAGAGGACAAAAGATCCCTCTTTTTTCTGC
TGCCGGTCTTCCCCATAATGAAATTGCTGCTCAGATTTGTCGCCAGGCTG
GTTTAGTCAAGCGATTGGAGAAGACTGATAATCTTC
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