FC931138

Overview
NameFC931138
Unique NameFC931138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931138_ssr23 microsatellite FC931138_ssr23:23..48. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig475 contig Ccv1_Contig475:27..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_THEP3 (V-type ATP synthase beta chain OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=atpB PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.773e-50
Identity = 92/165 (55.76%), Postives = 129/165 (78.18%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            EY+TV  + GPL++++KV+G KY E+V I  G G +RRGQVLEV+G+KA+VQ+FEG++G++     V+F G+ ++  VS+DMLGR+F+G G+P D GP I+PE  LDI+G+ INP+ R YP E IQTGIS ID +N++ RGQK+P+FS +GLPH ++AAQI RQA
Sbjct:    4 EYKTVREIVGPLMLVEKVEGVKYNELVEIETGTGEIRRGQVLEVNGDKALVQLFEGSTGLNINDCKVRFVGKSIELGVSIDMLGRVFDGLGRPRDKGPMIIPEKRLDINGNPINPTARDYPSEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHAQLAAQIARQA 168          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_METJA (V-type ATP synthase beta chain OS=Methanocaldococcus jannaschii GN=atpB PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.773e-50
Identity = 99/171 (57.89%), Postives = 124/171 (72.51%), Query Frame = 2
Query:  137 TLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            T   A+EY +V  +AGPL+I++ V+G  Y EIV +   DG  R GQVLE     AVVQVFEGT+G+  K T V+FTG   K  VS++MLGRIFNG+GKPID GP I+PE  LDI+G  +NP  R  P + IQTGISTID MN++ RGQK+P+FS +GLPHN++AAQI RQA
Sbjct:    3 TAASAIEYSSVKSIAGPLLIVEGVEGAAYGEIVEVICPDGEKRMGQVLEAREGLAVVQVFEGTTGLSTKDTRVRFTGRTAKIGVSMEMLGRIFNGAGKPIDGGPEIVPEKELDINGYPLNPVSRKVPSDFIQTGISTIDGMNTLVRGQKLPIFSGSGLPHNQLAAQIARQA 173          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_METAC (V-type ATP synthase beta chain OS=Methanosarcina acetivorans GN=atpB PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.155e-49
Identity = 97/167 (58.08%), Postives = 127/167 (76.05%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGL 655
            EY+T+T +AGPL+ ++K +   Y EIVNI++ DGT+RRGQVL+   +  VVQVFEGT G+D K   V FTGE LK P S+D+LGRI +GSG P D GP I+P+  LDI+G+++NP  R  P++ IQTGISTID  N++ RGQK+P+FSA+GLPHNEIA QI RQA +
Sbjct:    4 EYKTITQIAGPLIFVEKTEPVGYNEIVNIKMTDGTVRRGQVLDSSSDIVVVQVFEGTGGLD-KDCGVIFTGETLKLPASIDLLGRILSGSGDPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASV 169          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_UNCMA (V-type ATP synthase beta chain OS=Uncultured methanogenic archaeon RC-I GN=atpB PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.509e-49
Identity = 97/172 (56.40%), Postives = 130/172 (75.58%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLE 670
            EY+T++ +AGPL+ + K +   Y E+VNI L DGT++RGQVL+   +   VQVFEGTSGI ++ ++V+F GE +K PVS DMLGRI +GSG+P+D GP I+PE  L+I G++INP  R  P++ IQTGISTID MN++ RGQK+P+FS +GLPHNEIA QI RQA +V   E
Sbjct:    3 EYKTISEIAGPLLFVRKTEPVGYQELVNIVLSDGTVKRGQVLDSSNDVVAVQVFEGTSGI-SRDSSVKFLGETIKMPVSKDMLGRILSGSGEPLDGGPAIIPEKRLEIVGAAINPYSRRQPKDFIQTGISTIDGMNTLVRGQKLPIFSGSGLPHNEIALQIARQAKVVGSTE 173          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_CLOTH (V-type ATP synthase beta chain OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=atpB PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.509e-49
Identity = 92/165 (55.76%), Postives = 128/165 (77.58%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            EYRT+T VAGPL+++ KV+G KY E+  I L +G +RR +VLEVDG+ A+VQ+FE ++GI+   + V+F G  ++ PVS+DMLGR+F+G GKP+D GP I+P+  LDI+G  +NP+ R YP E IQTGIS ID +N++ RGQK+P+FS +GLPH ++AAQI RQA
Sbjct:    4 EYRTITEVAGPLMLVQKVEGVKYGELGEIELANGEIRRCKVLEVDGQNALVQLFESSTGINVATSKVRFLGRSIELPVSMDMLGRVFSGMGKPLDGGPNIIPDKRLDINGLPMNPAARNYPSEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHAQLAAQIARQA 168          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_METBA (V-type ATP synthase beta chain OS=Methanosarcina barkeri GN=atpB PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.574e-49
Identity = 94/167 (56.29%), Postives = 127/167 (76.05%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGL 655
            EY+T+T +AGPLV ++K +   Y EIV I L DGT RRG+VL+   +  V+Q+FEGT+G+D +   V FTGE LK P S+D+LGRI +GSG+P+D GP I+P+  LDI+G+++NP  R  P++ IQTGISTID  N++ RGQK+P+FSA+GLPHNEIA QI RQA +
Sbjct:    4 EYKTITQIAGPLVFVEKTEPVGYKEIVTINLPDGTTRRGEVLDSSSDIVVIQIFEGTTGLDKECGVV-FTGETLKLPASIDLLGRILSGSGEPLDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQAAV 169          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_METBF (V-type ATP synthase beta chain OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=atpB PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.390e-49
Identity = 93/167 (55.69%), Postives = 127/167 (76.05%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGL 655
            EY+T+T +AGPLV ++K +   Y EIV I + DGT RRG+VL+   +  V+Q+FEGT+G+D +   V FTGE LK P S+D+LGRI +GSG+P+D GP I+P+  LDI+G+++NP  R  P++ IQTGISTID  N++ RGQK+P+FSA+GLPHNEIA QI RQA +
Sbjct:    4 EYKTITQIAGPLVFVEKTEPVGYKEIVTINMPDGTTRRGEVLDSSSDIVVIQIFEGTTGLDKECGVV-FTGETLKLPASIDLLGRILSGSGEPLDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQAAV 169          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_METMJ (V-type ATP synthase beta chain OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=atpB PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.734e-49
Identity = 96/165 (58.18%), Postives = 125/165 (75.76%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            EYRTV  +AGPLV ++K +   Y E+VNI   DGT++RGQVL+   E  VVQVFE T+GI  + + ++FTGE +K PV  DMLGRI +G GKPID GP I+PE  L+I+G++INP  R+ PE+ IQTGISTID  N++ RGQK+P+FSA+GLPHN++A QI RQA
Sbjct:    3 EYRTVAQIAGPLVFVEKTEPVGYSELVNIVTADGTVKRGQVLDTSDEIVVVQVFETTAGI-GRDSGIRFTGETIKMPVGKDMLGRILSGGGKPIDGGPDIVPEKRLEITGAAINPYARSSPEDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNDVALQIARQA 166          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_METPE (V-type ATP synthase beta chain OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=atpB PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.489e-49
Identity = 97/165 (58.79%), Postives = 123/165 (74.55%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            EYRT+  +AGPLV ++K +   Y E+VNI L DGT++RGQVL+   +  VVQVFE T+GI  K + V+FTGE +K PV  DMLGRI +GSGKPID GP I+PE  LDI+G++INP  R  P + I+TGISTID  N++ RGQK+P+FS AGLPHN +A QI RQA
Sbjct:    3 EYRTINKIAGPLVFIEKTEPIGYEELVNIVLYDGTIKRGQVLDTSDDLVVVQVFETTTGI-GKDSGVRFTGETIKMPVGRDMLGRILSGSGKPIDGGPEIVPEKRLDITGAAINPYARASPSDFIETGISTIDGTNTLVRGQKLPIFSGAGLPHNNVALQIARQA 166          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_METB6 (V-type ATP synthase beta chain OS=Methanoregula boonei (strain 6A8) GN=atpB PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.277e-48
Identity = 95/165 (57.58%), Postives = 123/165 (74.55%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            EYRT+T +AGPLV ++K +   Y E+VNI L DGT++RGQVL+   +  VVQ+FE T+GI  + + V+FTGE +K PV  +MLGRI +G GKPID GP I+PE  LDI+G++INP  R  P + IQTGISTID  N++ RGQK+P+FS AGLPHN +A QI RQA
Sbjct:    3 EYRTITKIAGPLVFVEKTEPIGYQELVNIVLSDGTIKRGQVLDTSDDLVVVQIFETTTGI-GRDSGVRFTGETIKMPVGREMLGRILSGGGKPIDGGPEIVPEKRLDITGAAINPWARNSPSDFIQTGISTIDGTNTLVRGQKLPIFSGAGLPHNNVALQIARQA 166          
The following BLAST results are available for this feature:
BLAST of FC931138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
VATB_THEP36.773e-5055.76V-type ATP synthase beta chain OS=Thermoanaerobact... [more]
VATB_METJA6.773e-5057.89V-type ATP synthase beta chain OS=Methanocaldococc... [more]
VATB_METAC1.155e-4958.08V-type ATP synthase beta chain OS=Methanosarcina a... [more]
VATB_UNCMA1.509e-4956.40V-type ATP synthase beta chain OS=Uncultured metha... [more]
VATB_CLOTH1.509e-4955.76V-type ATP synthase beta chain OS=Clostridium ther... [more]
VATB_METBA2.574e-4956.29V-type ATP synthase beta chain OS=Methanosarcina b... [more]
VATB_METBF4.390e-4955.69V-type ATP synthase beta chain OS=Methanosarcina b... [more]
VATB_METMJ5.734e-4958.18V-type ATP synthase beta chain OS=Methanoculleus m... [more]
VATB_METPE7.489e-4958.79V-type ATP synthase beta chain OS=Methanosphaerula... [more]
VATB_METB61.277e-4857.58V-type ATP synthase beta chain OS=Methanoregula bo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34101H05EF PostHarvP1 Citrus clementina cDNA clone C34101H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931138 ID=FC931138; Name=FC931138; organism=Citrus clementina; type=EST; length=686bp
GCATCTCTCATTGCCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCA
CTCACAGAGATCACAAGAAAGACCAAAAAAAAAGAAAAAAATTGAAAATG
GGTGTGGCACAAAACAATGTTGACATGGAGGAGGGTACTCTGGAAGTCGC
CATGGAGTACAGAACGGTCACCGGAGTTGCTGGGCCTCTAGTTATCCTTG
ATAAAGTCAAGGGACCCAAATATTATGAGATTGTCAATATTCGGTTGGGA
GATGGAACAATGCGACGTGGTCAGGTCCTAGAAGTTGATGGAGAGAAAGC
TGTTGTTCAGGTCTTTGAAGGGACATCCGGAATTGACAATAAATTTACAA
CTGTGCAGTTTACAGGGGAGGTTCTGAAGACTCCTGTCTCATTGGATATG
CTTGGGCGCATTTTTAATGGTTCTGGGAAACCCATTGATAATGGTCCCCC
AATTTTGCCAGAGGCTTACTTGGATATATCCGGAAGTTCTATCAACCCTA
GTGAGAGAACCTATCCTGAAGAGATGATACAGACAGGGATTTCTACCATT
GATGTGATGAACTCCATTGCTAGAGGACAAAAGATCCCTCTTTTTTCTGC
TGCCGGTCTTCCCCATAATGAAATTGCTGCTCAGATTTGTCGCCAGGCTG
GTTTAGTCAAGCGATTGGAGAAGACTGATAATCTTC
back to top