FC931138

Overview
NameFC931138
Unique NameFC931138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931138_ssr23 microsatellite FC931138_ssr23:23..48. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig475 contig Ccv1_Contig475:27..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB1_METHJ (V-type ATP synthase beta chain 1 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=atpB1 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.668e-48
Identity = 97/165 (58.79%), Postives = 124/165 (75.15%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            EYRT+T VAGPLV ++K +   Y E+VN+ L DG+ +RGQVL+   +  VVQVFE T+GI  K T V+FTGE +K PV  DMLGRI +G+GKP D GP I+PE  L+I+G++INP  R  P + IQTGISTID+ N++ RGQK+P+FS +GLPHNEIA QI RQA
Sbjct:    3 EYRTITQVAGPLVFVEKTEPVGYQELVNLVLADGSEKRGQVLDTSDDIVVVQVFETTTGI-GKDTGVRFTGETIKMPVGKDMLGRILSGAGKPKDGGPDIVPEKRLEITGAAINPWARGSPRQFIQTGISTIDLTNTLVRGQKLPIFSGSGLPHNEIALQIARQA 166          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_ARCFU (V-type ATP synthase beta chain OS=Archaeoglobus fulgidus GN=atpB PE=3 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.179e-48
Identity = 96/165 (58.18%), Postives = 122/165 (73.94%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            EY+T+T VAGPLV ++K +   Y E+V I L DG+ RRGQVL+   +  VVQVFEGT G+D   +TV+FTG+++K   S DMLGRI +GSG+PID GP I+PE    I G++INP  R YP E IQTGIS ID MN++ RGQK+P+FS +GLPHN+IA QI RQA
Sbjct:    3 EYKTITQVAGPLVFVEKTEPVAYGELVTITLPDGSTRRGQVLDTSKDVVVVQVFEGTRGVDTS-STVRFTGDIVKLNCSQDMLGRILSGSGEPIDGGPKIVPEERRPIVGAAINPYARQYPREFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNDIALQIARQA 166          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_STAMF (V-type ATP synthase beta chain OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=atpB PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.854e-48
Identity = 94/164 (57.32%), Postives = 120/164 (73.17%), Query Frame = 2
Query:  182 GPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEK 673
            G L+I + +KG  Y E+V + LG G  R GQV++V  +  ++QVF G S ID K + V++ GE LK PVS+DMLGRIF+G G+PID GPPI+PE YLDI+GS INP+ R  P E I+TGIS ID +NSI RGQK+P+FS +GLPHN IAAQI RQA +  + EK
Sbjct:   19 GSLLIAEPMKGVSYGEVVEVVLGSGETRLGQVIDVSRDATIIQVFGGVSDIDLKISKVRYRGETLKLPVSIDMLGRIFDGLGRPIDGGPPIVPEDYLDINGSPINPASRLPPSEFIETGISAIDGLNSIVRGQKLPIFSGSGLPHNRIAAQIVRQARVRGKEEK 182          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_METBU (V-type ATP synthase beta chain OS=Methanococcoides burtonii (strain DSM 6242) GN=atpB PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.280e-48
Identity = 93/165 (56.36%), Postives = 124/165 (75.15%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            EY+T+  V+GPL+ L+K +   Y E+V I L DGT +RGQVL+   +  VVQVFEGT G+ N+ + V F+GE +K PVS DMLGRI +G+G+P+D GP I+P+  +DI+G+S+NP  R  PE+ IQTGISTID  N++ RGQK+P+FS +GLPHNEIA QI RQA
Sbjct:    4 EYKTIVEVSGPLIFLEKTEPVGYGELVQINLPDGTTKRGQVLDTSADMVVVQVFEGTVGL-NEESGVVFSGETIKLPVSKDMLGRILSGAGEPLDGGPRIIPDKRVDINGASMNPYSRMPPEDFIQTGISTIDGTNTLVRGQKLPIFSGSGLPHNEIALQIARQA 167          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_METM6 (V-type ATP synthase beta chain OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=atpB PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.367e-47
Identity = 93/170 (54.71%), Postives = 122/170 (71.76%), Query Frame = 2
Query:  140 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            ++  +EY +V+ +AGPL+++D ++G  Y EIV+I   +G  R GQVLE   E AVVQVFEGTS ++   T V+FTG+  K  VS DMLGRIFNG+GKP+D GP I+ E  LDI+G  +NP  R  P   +QTGISTID  N++ RGQKIP+FS +GLPHN++A QI RQA
Sbjct:    4 MQKTIEYTSVSRIAGPLMVIDGIEGVAYGEIVDITTPNGEKRTGQVLEAREEIAVVQVFEGTSELNTSETKVRFTGDTAKIGVSYDMLGRIFNGAGKPLDGGPEIIAEKKLDINGYPLNPVSRNPPNAFVQTGISTIDGTNTLVRGQKIPIFSGSGLPHNKLATQIARQA 173          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_META3 (V-type ATP synthase beta chain OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=atpB PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.367e-47
Identity = 92/171 (53.80%), Postives = 122/171 (71.35%), Query Frame = 2
Query:  137 TLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            +LE  +EY +V+ +AGPL++++ +KG  Y EIV+I    G  R GQVLE   + AVVQVFEGT+ ++   T ++F GE  K  VS DMLGRIFNG+GKP+D GP I+ E  +DI+G  +NP  R  P + +QTGISTID  N++ RGQKIP+FS +GLPHN +AAQI RQA
Sbjct:    3 SLEKNIEYTSVSSIAGPLIVVEGIKGVAYGEIVSITCPSGEKRTGQVLEAREDVAVVQVFEGTTALNTSETKIRFVGETAKLGVSTDMLGRIFNGAGKPLDGGPDIIAEDKIDINGYPLNPVSRQSPNDFVQTGISTIDGTNTLVRGQKIPIFSGSGLPHNLLAAQIARQA 173          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_METM7 (V-type ATP synthase beta chain OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=atpB PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.009e-47
Identity = 93/170 (54.71%), Postives = 122/170 (71.76%), Query Frame = 2
Query:  140 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            ++  +EY +V+ +AGPL+++D ++G  Y EIV+I   +G  R GQVLE   E AVVQVFEGTS ++   T V+FTG+  K  VS DMLGRIFNG+GKP+D GP I+ E  LDI+G  +NP  R  P   +QTGISTID  N++ RGQKIP+FS +GLPHN++A QI RQA
Sbjct:    4 MQKTIEYTSVSRIAGPLMVIDGIEGIAYGEIVDITTPNGDKRTGQVLEAREEIAVVQVFEGTSELNTSETKVRFTGDTAKIGVSYDMLGRIFNGAGKPLDGGPEIIAEKKLDINGYPLNPVSRNPPNAFVQTGISTIDGTNTLVRGQKIPIFSGSGLPHNKLATQIARQA 173          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_CLOBM (V-type ATP synthase beta chain OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=atpB PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.009e-47
Identity = 91/165 (55.15%), Postives = 124/165 (75.15%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            EYRTV  V GPL+++D+V G  + E+V I L +G  RRG+VLE++ +KA+VQ+FEG++GI+ K   V+F G+ L+  VS DMLGR+F+G G P D GP I+P+  LDI+G  INP  R YP+E IQTG+S ID +N++ RGQK+P+FS +GLPH E+AAQI RQA
Sbjct:    4 EYRTVKEVVGPLMLVDQVDGVSFDELVEIELHNGEKRRGKVLEINKDKAMVQLFEGSAGINLKGAKVKFLGKPLELGVSEDMLGRVFDGLGNPKDGGPKIIPDKKLDINGIPINPVARNYPDEFIQTGVSAIDGLNTLVRGQKLPVFSGSGLPHAELAAQIARQA 168          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_CLOBL (V-type ATP synthase beta chain OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=atpB PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.009e-47
Identity = 91/165 (55.15%), Postives = 124/165 (75.15%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            EYRTV  V GPL+++D+V G  + E+V I L +G  RRG+VLE++ +KA+VQ+FEG++GI+ K   V+F G+ L+  VS DMLGR+F+G G P D GP I+P+  LDI+G  INP  R YP+E IQTG+S ID +N++ RGQK+P+FS +GLPH E+AAQI RQA
Sbjct:    4 EYRTVKEVVGPLMLVDQVDGVSFDELVEIELHNGEKRRGKVLEINKDKAMVQLFEGSAGINLKGAKVKFLGKPLELGVSEDMLGRVFDGLGNPKDGGPKIIPDKKLDINGIPINPVARNYPDEFIQTGVSAIDGLNTLVRGQKLPVFSGSGLPHAELAAQIARQA 168          
BLAST of FC931138 vs. ExPASy Swiss-Prot
Match: VATB_CLOBK (V-type ATP synthase beta chain OS=Clostridium botulinum (strain Okra / Type B1) GN=atpB PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.009e-47
Identity = 91/165 (55.15%), Postives = 124/165 (75.15%), Query Frame = 2
Query:  155 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 649
            EYRTV  V GPL+++D+V G  + E+V I L +G  RRG+VLE++ +KA+VQ+FEG++GI+ K   V+F G+ L+  VS DMLGR+F+G G P D GP I+P+  LDI+G  INP  R YP+E IQTG+S ID +N++ RGQK+P+FS +GLPH E+AAQI RQA
Sbjct:    4 EYRTVKEVVGPLMLVDQVDGVSFDELVEIELHNGEKRRGKVLEINKDKAMVQLFEGSAGINLKGAKVKFLGKPLELGVSEDMLGRVFDGLGNPKDGGPKIIPDKKLDINGIPINPVARNYPDEFIQTGVSAIDGLNTLVRGQKLPVFSGSGLPHAELAAQIARQA 168          
The following BLAST results are available for this feature:
BLAST of FC931138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
VATB1_METHJ1.668e-4858.79V-type ATP synthase beta chain 1 OS=Methanospirill... [more]
VATB_ARCFU2.179e-4858.18V-type ATP synthase beta chain OS=Archaeoglobus fu... [more]
VATB_STAMF4.854e-4857.32V-type ATP synthase beta chain OS=Staphylothermus ... [more]
VATB_METBU8.280e-4856.36V-type ATP synthase beta chain OS=Methanococcoides... [more]
VATB_METM65.367e-4754.71V-type ATP synthase beta chain OS=Methanococcus ma... [more]
VATB_META35.367e-4753.80V-type ATP synthase beta chain OS=Methanococcus ae... [more]
VATB_METM77.009e-4754.71V-type ATP synthase beta chain OS=Methanococcus ma... [more]
VATB_CLOBM7.009e-4755.15V-type ATP synthase beta chain OS=Clostridium botu... [more]
VATB_CLOBL7.009e-4755.15V-type ATP synthase beta chain OS=Clostridium botu... [more]
VATB_CLOBK7.009e-4755.15V-type ATP synthase beta chain OS=Clostridium botu... [more]

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Properties
Property NameValue
Genbank descriptionC34101H05EF PostHarvP1 Citrus clementina cDNA clone C34101H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931138 ID=FC931138; Name=FC931138; organism=Citrus clementina; type=EST; length=686bp
GCATCTCTCATTGCCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCA
CTCACAGAGATCACAAGAAAGACCAAAAAAAAAGAAAAAAATTGAAAATG
GGTGTGGCACAAAACAATGTTGACATGGAGGAGGGTACTCTGGAAGTCGC
CATGGAGTACAGAACGGTCACCGGAGTTGCTGGGCCTCTAGTTATCCTTG
ATAAAGTCAAGGGACCCAAATATTATGAGATTGTCAATATTCGGTTGGGA
GATGGAACAATGCGACGTGGTCAGGTCCTAGAAGTTGATGGAGAGAAAGC
TGTTGTTCAGGTCTTTGAAGGGACATCCGGAATTGACAATAAATTTACAA
CTGTGCAGTTTACAGGGGAGGTTCTGAAGACTCCTGTCTCATTGGATATG
CTTGGGCGCATTTTTAATGGTTCTGGGAAACCCATTGATAATGGTCCCCC
AATTTTGCCAGAGGCTTACTTGGATATATCCGGAAGTTCTATCAACCCTA
GTGAGAGAACCTATCCTGAAGAGATGATACAGACAGGGATTTCTACCATT
GATGTGATGAACTCCATTGCTAGAGGACAAAAGATCCCTCTTTTTTCTGC
TGCCGGTCTTCCCCATAATGAAATTGCTGCTCAGATTTGTCGCCAGGCTG
GTTTAGTCAAGCGATTGGAGAAGACTGATAATCTTC
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